Items where Author is "Cooper, Colin"

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Luca, Bogdan, Moulton, Vincent, Ellis, Christopher, Connell, Shea P, Brewer, Daniel and Cooper, Colin (2020) Convergence of Prognostic Gene Signatures Suggests Underlying Mechanisms of Human Prostate Cancer Progression. Genes, 11 (7). pp. 1-15. ISSN 2073-4425

Connell, Shea P, O'Reilly, Eve, Tuzova, Alexandra, Webb, Martyn, Hurst, Rachel, Mills, Robert, Zhao, Fang, Bapat, Bharati, Cooper, Colin, Perry, Antoinette, Clark, Jeremy and Brewer, Daniel (2020) Development of a multivariable risk model integrating urinary cell DNA methylation and cell-free RNA data for the detection of significant prostate cancer. The Prostate, 80 (7). pp. 547-558. ISSN 0270-4137

Luca, Bogdan, Moulton, Vincent, Ellis, Christopher, Edwards, Dylan, Campbell, Colin, Cooper, Rosalin, Clark, Jeremy, Brewer, Daniel and Cooper, Colin (2020) A novel stratification framework for predicting outcome in patients with prostate cancer. British Journal of Cancer, 122 (10). 1467–1476. ISSN 0007-0920

Zapatka, Marc, Borozan, Ivan, Brewer, Daniel, Iskar, Murat, Grundhoff, Adam, Alawi, Malik, Desai, Nikita, Sültmann, Holger, Moch, Holger, Cooper, Colin, Eils, Roland, Ferretti, Vincent and Lichter, Peter (2020) The landscape of viral associations in human cancers. Nature Genetics, 52 (3). 320–330. ISSN 1061-4036

Gihawi, Abraham, Rallapalli, Ghanasyam, Hurst, Rachel, Cooper, Colin, Leggett, Richard M. and Brewer, Daniel (2019) SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines. Genome Biology, 20. ISSN 1465-6906

Magiorkinis, Gkikas, Matthews, Philippa C., Wallace, Susan E., Jeffery, Katie, Dunbar, Kevin, Tedder, Richard, Mbisa, Jean L., Hannigan, Bernadette, Vayena, Effy, Simmonds, Peter, Brewer, Daniel S., Gihawi, Abraham, Rallapalli, Ghanasyam, Lahnstein, Lea, Fowler, Tom, Patch, Christine, Maleady-Crowe, Fiona, Lucassen, Anneke and Cooper, Colin (2019) Potential for diagnosis of infectious disease from the 100,000 Genomes Project Metagenomic Dataset: Recommendations for reporting results. Wellcome Open Research, 4. ISSN 2398-502X

Connell, Shea P, Yazbek Hanna, Marcelino, McCarthy, Frank, Hurst, Rachel, Webb, Martyn, Curley, Helen, Walker, Helen, Mills, Robert, Ball, Richard, Sanda, Martin, Pellegrini, Kathryn, Patil, Dattatraya, Perry, Antoinette, Schalken, Jack, Pandha, Hardev, Whitaker, Hayley C, Dennis, Nening, Stuttle, Christine, Mills, Ian, Guldvik, Ingrid, Parker, Christopher C, Brewer, Daniel, Cooper, Colin and Clark, Jeremy (2019) A Four-Group Urine Risk Classifier For Predicting Outcome In Prostate Cancer Patients. BJU International, 124 (4). pp. 609-620. ISSN 1464-4096

Traka, Maria H, Melchini, Antonietta, Coode-Bate, Jack, Al Kadhi, Omar, Saha, Shikha, Defernez, Marianne, Troncoso-Rey, Perla, Kibblewhite, Helen, O'Neill, Carmel M, Bernuzzi, Federico, Mythen, Laura, Hughes, Jackie, Needs, Paul W, Dainty, Jack R, Savva, George M, Mills, Robert D, Ball, Richard Y, Cooper, Colin S and Mithen, Richard F (2019) Transcriptional changes in prostate of men on active surveillance after a 12-mo glucoraphanin-rich broccoli intervention—results from the Effect of Sulforaphane on prostate CAncer PrEvention (ESCAPE) randomized controlled trial. The American Journal of Clinical Nutrition, 109 (4). pp. 1133-1144. ISSN 0002-9165

O'Reilly, Eve, Tuzova, Alexandra, Walsh, Anna, Russell, Niamh, O’Brien, Odharnaith, Kelly, Sarah, Dhomhnallain, Odharna, DeBarra, Liam, Dale, Connie, Brugman, Rick, Clarke, Gavin, Schmidt, Olivia, O'Meachair, Shane, Patil, Dattatraya, Pellegrini, Kathryn, Fleshner, Neil, Garcia, Julia, Zhao, Fang, Finn, Stephen, Mills, Robert, Y. Hanna, Marcelino, Hurst, Rachel, McEvoy, Elizabeth, Gallagher, William, Manecksha, Rustom, Cooper, Colin, Brewer, Daniel, Bapat, Bharati, Sanda, Martin, Clark, Jeremy and Perry, Antoinette (2019) epiCaPture: a urine DNA methylation test for early detection of aggressive prostate cancer. JCO Precision Oncology, 3 (3). pp. 1-18. ISSN 2473-4284

Webb, Martyn, Manley, Kate, Olivan, Mireia, Guldvik, Ingrid, Palczynska, Malgorzata, Hurst, Rachel, Connell, Shea P, Mills, Ian, Brewer, Daniel, Mills, Robert, Cooper, Colin and Clark, Jeremy (2019) Methodology for the At-Home Collection of Urine Samples for Prostate Cancer Detection. Biotechniques, 68 (2). ISSN 0736-6205

Luca, Bogdan-Alexandru, Brewer, Daniel S, Edwards, Dylan R, Edward, Sandra, Whitaker, Hayley C, Merson, Sue, Denis, Nening, Cooper, Rosalin A, Hazell, Steven, Warren, Anne Y, , The CancerMap Group, Eeles, Rosalind, Lynch, Andy G, Ross-Adams, Helen, Lamb, Alastair D, Neal, David E, Sethia, Krishna, Mills, Robert D, Ball, Richard Y, Curley, Helen, Clark, Jeremy, Moulton, Vincent and Cooper, Colin S (2018) DESNT: a poor prognosis category of human prostate cancer. European Urology Focus, 4 (6). pp. 842-850. ISSN 2405-4569

Zhao, Fang, Olkhov-Mitsel, Ekaterina, Kamdar, Shivani, Jeyapala, Renu, Garcia, Julia, Hurst, Rachel, Yazbek Hanna, Marcelino, Mills, Robert, Tuzova, Alexandra, O'Reilly, Eve, Kelly, Sarah, Cooper, Colin, Brewer, Daniel, Perry, Antoinette, Clark, Jeremy, Fleshner, Neil and Bapat, Bharati (2018) A urine based DNA methylation Assay, ProCUrE, to identify clinically significant prostate cancer. Clinical Epigenetics, 10. ISSN 1868-7075

Wedge, David C., Gundem, Gunes, Mitchell, Thomas, Woodcock, Dan J., Martincorena, Inigo, Ghori, Mohammed, Zamora, Jorge, Butler, Adam, Whitaker, Hayley, Kote-Jarai, Zsofia, Alexandrov, Ludmil B., Van Loo, Peter, Massie, Charlie E., Dentro, Stefan, Warren, Anne Y., Verrill, Clare, Berney, Dan M., Dennis, Nening, Merson, Sue, Hawkins, Steve, Howat, William, Lu, Yong-Jie, Lambert, Adam, Kay, Jonathan, Kremeyer, Barbara, Karaszi, Katalin, Luxton, Hayley, Camacho, Niedzica, Marsden, Luke, Edwards, Sandra, Matthews, Lucy, Bo, Valeria, Leongamornlert, Daniel, McLaren, Stuart, Ng, Anthony, Yu, Yongwei, Zhang, Hongwei, Dadaev, Tokhir, Thomas, Sarah, Easton, Douglas F., Ahmed, Mahbubl, Bancroft, Elizabeth, Fisher, Cyril, Livni, Naomi, Nicol, David, Tavaré, Simon, Gill, Pelvender, Greenman, Christopher, Khoo, Vincent, Van As, Nicholas, Kumar, Pardeep, Ogden, Christopher, Cahill, Declan, Thompson, Alan, Mayer, Erik, Rowe, Edward, Dudderidge, Tim, Gnanapragasam, Vincent, Shah, Nimish C., Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Teague, Jon, Hazell, Steven, Corbishley, Cathy, de Bono, Johann, Attard, Gerhardt, Isaacs, William, Visakorpi, Tapio, Fraser, Michael, Boutros, Paul C., Bristow, Robert G., Workman, Paul, Sander, Chris, Hamdy, Freddie C., Futreal, Andrew, McDermott, Ultan, Al-Lazikani, Bissan, Lynch, Andrew G., Bova, G. Steven, Foster, Christopher S., Brewer, Daniel S., Neal, David E., Cooper, Colin S. and Eeles, Rosalind A. (2018) Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets. Nature Genetics, 50. 682–692. ISSN 1061-4036

Alshaker, Heba, Wang, Qi, Srivats, Shyam, Chao, Yimin, Cooper, Colin and Pchejetski, Dmitri (2017) New FTY720-docetaxel nanoparticle therapy overcomes FTY720-induced lymphopenia and inhibits metastatic breast tumour growth. Breast Cancer Research and Treatment, 165 (3). 531–543. ISSN 0167-6806

Camacho, Niedzica, Van Loo, Peter, Edwards, Sandra, Kay, Jonathan, Matthews, Lucy, Haase, Kerstin, Clark, Jeremy, Dennis, Nening, Thomas, Sarah, Kremeyer, Barbara, Zamora, Jorge, Butler, Adam P., Gundem, Gunes, Merson, Sue, Luxton, Hayley, Hawkins, Steve, Ghori, Mohammed, Marsden, Luke, Lambert, Adam, Karaszi, Katalin, Pelvender, Gill, Massie, Charlie, Kote-Jarai, ZSofia, Raine, Keiran, Jones, David, Howat, William, Hazell, Steven, Livni, Naomi, Fisher, Cyril, Ogden, Christopher, Kumar, Pardeep, Thompson, Alan, Nicol, David, Mayer, Erik, Dudderidge, Tim, Yu, Yongwei, Zhang, Hongwei, Shah, Nimish, Gnanapragasam, Vincent, Isaacs, William, Visakorpi, Tapio, Hamdy, Freddie, Berney, Dan, Verrill, Clare, Warren, Anne, Wedge, David, Lynch, Andrew, Foster, Christopher, Lu, Yong Jie, Bova, G Steven, Whitaker, Hayley, McDermott, Ultan, Neal, David, Eeles, Rosalind, Cooper, Colin and Brewer, Daniel (2017) Appraising the relevance of DNA copy number loss and gain in prostate cancer using whole genome DNA sequence data. PLoS Genetics, 13 (9). ISSN 1553-7404

Wang, Qi, Alshaker, Heba, Böhler, Torsten, Srivats, Shyam, Chao, Yimin, Cooper, Colin and Pchejetski, Dmitri (2017) Core shell lipid-polymer hybrid nanoparticles with combined docetaxel and molecular targeted therapy for the treatment of metastatic prostate cancer. Scientific Reports, 7. ISSN 2045-2322

Stankiewicz, Elzbieta, Mao, Xueying, Mangham, D. Chas, Xu, Lei, Yeste-Velasco, Marc, Fisher, Gabrielle, North, Bernard, Chaplin, Tracy, Young, Bryan, Wang, Yuqin, Kaur Bansal, Jasmin, Kudahetti, Sakunthala, Spencer, Lucy, Foster, Christopher S., Møller, Henrik, Scardino, Peter, Oliver, R. Tim, Shamash, Jonathan, Cuzick, Jack, Cooper, Colin S., Berney, Daniel M. and Lu, Yong-Jie (2017) Identification of FBXL4 as a Metastasis Associated Gene in Prostate Cancer. Scientific Reports, 7. ISSN 2045-2322

Pellegrini, Kathryn L., Patil, Dattatraya, Douglas, Kristen J.S., Lee, Grace, Wehrmeyer, Kathryn, Torlak, Mersiha, Clark, Jeremy, Cooper, Colin S., Moreno, Carlos S. and Sanda, Martin G. (2017) Detection of prostate cancer-specific transcripts in extracellular vesicles isolated from post-DRE urine. The Prostate, 77 (9). pp. 990-999. ISSN 0270-4137

Luedeke, Manuel, Rinckleb, Antje E., Fitzgerald, Liesel M., Geybels, Milan S., Schleutker, Johanna, Eeles, Rosalind A., Teixeira, Manuel R., Cannon-Albright, Lisa, Ostrander, Elaine A., Weikert, Steffen, Herkommer, Kathleen, Wahlfors, Tiina, Visakorpi, Tapio, Leinonen, Katri A., Tammela, Teuvo L. J., Cooper, Colin S., Kote-Jarai, Zsofia, Edwards, Sandra, Goh, Chee L., McCarthy, Frank, Parker, Chris, Flohr, Penny, Paulo, Paula, Jerónimo, Carmen, Henrique, Rui, Krause, Hans, Wach, Sven, Lieb, Verena, Rau, Tilman T., Vogel, Walther, Kuefer, Rainer, Hofer, Matthias D., Perner, Sven, Rubin, Mark A., Agarwal, Archana M., Easton, Doug F., Amin Al Olama, Ali, Benlloch, Sara, , The PRACTICAL consortium, Hoegel, Josef, Stanford, Janet L and Maier, Christiane (2016) Prostate cancer risk regions at 8q24 and 17q24 are differentially associated with somatic TMPRSS2:ERG fusion status. Human Molecular Genetics, 25 (24). pp. 5490-5499. ISSN 0964-6906

Alshaker, Heba, Wang, Qi, Kawano, Yoshiaki, Arafat, Tawfiq, Böhler, Torsten, Winkler, Mathias, Cooper, Colin and Pchejetski, Dmitri (2016) Everolimus (RAD001) sensitizes prostate cancer cells to docetaxel by down-regulation of HIF-1α and sphingosine kinase 1. Oncotarget, 7 (49). pp. 80943-80956. ISSN 1949-2553

Behjati, Sam, Gundem, Gunes, Wedge, David C., Roberts, Nicola D., Tarpey, Patrick S., Cooke, Susanna L., Van Loo, Peter, Alexandrov, Ludmil B., Ramakrishna, Manasa, Davies, Helen, Nik-Zainal, Serena, Hardy, Claire, Latimer, Calli, Raine, Keiran M., Stebbings, Lucy, Menzies, Andy, Jones, David, Shepherd, Rebecca, Butler, Adam P., Teague, Jon W., Jorgensen, Mette, Khatri, Bhavisha, Pillay, Nischalan, Shlien, Adam, Futreal, P. Andrew, Badie, Christophe, Cooper, Colin S., Eeles, Rosalind A., Easton, Douglas, Foster, Christopher, Neal, David E., Brewer, Daniel S., Hamdy, Freddie, Lu, Yong-Jie, Lynch, Andrew G., Massi, Charlie E., Ng, Anthony, Whitaker, Hayley C., Yu, Yongwei, Zhang, Hongwei, Bancroft, Elizabeth, Berney, Dan, Camacho, Niedzica, Corbishley, Cathy, Dadaev, Tokhir, Dennis, Nening, Dudderidge, Tim, Edwards, Sandra, Fisher, Cyril, Ghori, Jilur, Gnanapragasam, Vincent J., Greenman, Christopher, Hawkins, Steve, Hazell, Steven, Howat, Will, Karaszi, Katalin, Kay, Jonathan, Kote-Jarai, Zsofia, Kremeyer, Barbara, Kumar, Pardeep, Lambert, Adam, Leongamornlert, Daniel, Livni, Naomi, Luxton, Hayley, Matthews, Lucy, Mayer, Erik, Merson, Susan, Nicol, David, Ogden, Christopher, O’Meara, Sarah, Pelvender, Gill, Shah, Nimish C., Tavare, Simon, Thomas, Sarah, Thompson, Alan, Verrill, Claire, Warren, Anne, Zamora, Jorge, McDermott, Ultan, Bova, G. Steven, Richardson, Andrea L., Flanagan, Adrienne M., Stratton, Michael R. and Campbell, Peter J. (2016) Mutational signatures of ionizing radiation in second malignancies. Nature Communications, 7. ISSN 2041-1723

Pal, Raj P., Kockelbergh, Roger C., Pringle, John Howard, Cresswell, Lara, Hew, Roger, Dormer, John P., Cooper, Colin, Mellon, John Kilian, Barwell, Julian G. and Hollox, Edward J. (2016) Immunocytochemical detection of ERG expression in exfoliated urinary cells identifies with high specificity patients with prostate cancer. BJU International, 117 (4). pp. 686-696. ISSN 1464-4096

White, Christopher, Alshaker, Heba, Cooper, Colin, Winkler, Matthias and Pchejetski, Dmitri (2016) The emerging role of FTY720 (Fingolimod) in cancer treatment. Oncotarget, 7 (17). pp. 23106-23127. ISSN 1949-2553

Cooper, Colin S, Clark, Jeremy, Brewer, Daniel S and Edwards, Dylan R (2016) Prostate Single Nucleotide Polymorphism Provides a Crucial Clue to Cancer Aggression in Active Surveillance Patients. European Urology, 69 (2). pp. 229-30. ISSN 0302-2838

Ross-Adams, H., Lamb, A.D., Dunning, M.J., Halim, S., Lindberg, J., Massie, C.M., Egevad, L.A., Russell, R., Ramos-Montoya, A., Vowler, S.L., Sharma, N.L., Kay, J., Whitaker, H., Clark, J., Hurst, R., Gnanapragasam, V.J., Shah, N.C., Warren, A.Y., Cooper, C.S., Lynch, A.G., Stark, R., Mills, I.G., Groenberg, H. and Neal, D.E. (2015) Integration of copy number and transcriptomics provides risk stratification in prostate cancer: A discovery and validation cohort study. EBioMedicine, 2 (9). 1133–1144.

Ju, Young Seok, Tubio, Jose M. C., Mifsud, William, Fu, Beiyuan, Davies, Helen R., Ramakrishna, Manasa, Li, Yilong, Yates, Lucy, Gundem, Gunes, Tarpey, Patrick S., Behjati, Sam, Papaemmanuil, Elli, Martin, Sancha, Fullam, Anthony, Gerstung, Moritz, Nangalia, Jyoti, Green, Anthony R., Caldas, Carlos, Borg, Åke, Tutt, Andrew, Lee, Ming Ta Michael, van't Veer, Laura J., Tan, Benita K. T., Aparicio, Samuel, Span, Paul N., Martens, John W. M., Knappskog, Stian, Vincent-Salomon, Anne, Børresen-Dale, Anne-Lise, Eyfjörd, Jórunn Erla, Flanagan, Adrienne M., Foster, Christopher, Neal, David E., Cooper, Colin, Eeles, Rosalind, Lakhani, Sunil R., Desmedt, Christine, Thomas, Gilles, Richardson, Andrea L., Purdie, Colin A., Thompson, Alastair M., McDermott, Ultan, Yang, Fengtang, Nik-Zainal, Serena, Campbell, Peter J. and Stratton, Michael R. (2015) Frequent somatic transfer of mitochondrial DNA into the nuclear genome of human cancer cells. Genome Research, 25 (6). pp. 814-824. ISSN 1088-9051

Gundem, Gunes, Van loo, Peter, Kremeyer, Barbara, Alexandrov, Ludmil b., Tubio, Jose M C, Papaemmanuil, Elli, Brewer, Daniel, Kallio, Heini, Högnäs, Högnäs, Annala, Matti, Kivinummi, Kati, Goody, Victoria, Latimer, Calli, O'Meara, Sarah, Dawson, Kevin, Isaacs, William, Emmert-Buck, Michael R, Nykter, Matti, Foster, Christopher S, Kote-Jarai, Zsofia, Easton, Douglas F, Whitaker, Hayley C, Neal, David E, Cooper, Colin, Eeles, Rosalind A, Visakorpi, Tapio, Campbell, Peter, Mcdermott, Ultan, Wedge, David C and Bova, G Steven (2015) The Evolutionary History of Lethal Metastatic Prostate Cancer. Nature, 520 (7547). 353–357. ISSN 1476-4687

Massie, Charlie E, Spiteri, Inmaculada, Ross-Adams, Helen, Luxton, Hayley J, Kay, Jonathan, Whitaker, Hayley C, Dunning, Mark J, Lamb, alastair D, Ramos-Montoya, Antonio, Brewer, Daniel, Cooper, Colin, Eeles, Rosalind A, Warren, Anne Y, Tavaré, Simon, Neal, David E and Lynch, Andy G (2015) HES5 silencing is an early and recurrent change in prostate tumourigenesis. Endocrine-Related Cancer (ERC), 22 (2). pp. 131-144. ISSN 1351-0088

Cooper, Colin, Eeles, Rosalind A, Wedge, David C, Van Loo, Peter, Gundem, Gunes, Alexandrov, Ludmil B., Kreymer, Barbara, Butler, Adam, Lynch, Andrew, Edwards, Sandra E, Camacho, Niedzica, Massie, Charlie E, Kote-Jarai, Zsofia, Dennis, Nening, Merson, Sue, Leongamornlert, Daniel A, Zamora, Jorge, Kay, Jonathan, Luxton, Hayley J, Corbishley, Cathy, Thomas, Sarah, Nik-Zainal, Serena, O'Meara, Sarah, Matthews, Lucy, Clark, Jeremy, Hurst, Rachel, Mithen (IFR), Richard, Bristow (Ontario Cancer Inst. CA), Rob, Boutros, Paul C, Fraser, Michael, Cooke, Susanna, Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Hinton, Jon, Teague, Jon, Mclaren, Stuart, Mudie, Laura, Hardy, Claire, Anderson, Elizabeth, Joseph, Olivia, Goody, Victoria, Robinson, Ben, Maddison, Mark, Gamble, Stephen J., Greenman, Christopher, Berney, Dan, Hazell, Steven, Livni, Naomi, Fisher, Cyril, Ogden, Christopher, Kumar, Pardeep, Thompson, Alan, Woodhouse, Christopher J, Nicol, David, Mayer, Erik, Dudderidge, Tim, Shah, Nimish, Gnanapragasam, Vincent, Voet, Thierry, Campbell, Peter, Futreal, P Andrew, Easton, Douglas F, Warren, Anne Y, Foster, Christopher S, Stratton, Michael R, Whitaker, Hayley C, Mcdermott, Ultan, Brewer, Daniel and Neal, David E (2015) Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue. Nature Genetics, 47. 367–372. ISSN 1061-4036

Alshaker, Heba, Wang, Qi, Frampton, Adam E., Krell, Jonathan, Waxman, Jonathan, Winkler, Mathias, Stebbing, Justin, Cooper, Colin, Yaguee, Ernesto and Pchejetski, Dmitri (2015) Sphingosine kinase 1 contributes to leptin-induced STAT3 phosphorylation through IL-6/gp130 transactivation in oestrogen receptor-negative breast cancer. Breast Cancer Research and Treatment, 149 (1). pp. 59-67. ISSN 1573-7217

Alshaker, Heba, Krell, Jonathan, Frampton, Adam E., Wang, Qi, Cooper, Colin, Winkler, Mathias, Yaguee, Ernesto, Pchejetski, Dmitri and Alshaker, Heba (2015) Leptin receptor-dependent and -independent STAT3 phosphorylation in oestrogen receptor-negative breast cancer. International Journal of Molecular Medicine, 36. S6. ISSN 1107-3756

Bettencourt-Silva, Joao H., Clark, Jeremy, Cooper, Colin S., Mills, Robert, Rayward-Smith, Victor J. and De La Iglesia, Beatriz (2015) Building Data-Driven Pathways From Routinely Collected Hospital Data:A Case Study on Prostate Cancer. JMIR Medical Informatics, 3 (3). ISSN 2291-9694

Boutros, Paul C, Fraser, Michael, Harding, Nicholas J, De Borja, Richard, Trudel, Dominique, Lalonde, Emilie, Meng, Alice, Hennings-Yeomans, Pablo H, McPherson, Andrew, Sabelnykova, Veronica Y, Zia, Amin, Fox, Natalie S, Livingstone, Julie, Shiah, Yu-jia, Wang, Jianxin, Beck, Timothy A, Have, Cherry L, Chong, Taryne, Sam, Michelle, Johns, Jeremy, Timms, Lee, Buchner, Nicholas, Wong, Ada, Watson, John D, Simmons, Trent T, P'ng, Christine, Zafarana, Gaetano, Nguyen, Francis, Luo, Xuemei, Chu, Kenneth C, Prokopec, Stephenie D, Sykes, Jenna, Dal Pra, Alan, Berlin, Alejandro, Brown, Andrew, Chan-seng-yue, Michelle A, Yousif, Fouad, Denroche, Robert E, Chong, Lauren C, Chen, Gregory M, Jung, Esther, Fung, Clement, Starmans, Maud H W, Chen, Hanbo, Govind, Shaylan K, Hawley, James, D'Costa, Alister, Pintilie, Melania, Waggott, Daryl, Hach, Faraz, Lambin, Philippe, Muthuswamy, Lakshmi B, Cooper, Colin, Eeles, Rosalind, Neal, David, Tetu, Bernard, Sahinalp, Cenk, Stein, Lincoln D, Fleshner, Neil, Shah, Sohrab P, Collins, Colin C, Hudson, Thomas J, Mcpherson, John D, Van Der Kwast, Theodorus and Bristow, Robert G (2015) Spatial genomic heterogeneity within localized, multifocal prostate cancer. Nature Genetics, 47. 736–745. ISSN 1061-4036

Manson-Bahr, David, Ball, Richard, Gundem, Gunes, Mills, Robert, Rochester, Mark, Goody, Victoria, O'Meara, Sarah, Flather, Marcus, Keeling, Matthew, Yazbek Hanna, Marcelino, Hurst, Rachel, Curley, Helen, Clark, Jeremy, Brewer, Daniel, Mcdermott, Ultan and Cooper, Colin (2015) Mutation detection in formalin-fixed prostate cancer biopsies taken at the time of diagnosis using next generation DNA sequencing. Journal of Clinical Pathology, 68. pp. 212-217. ISSN 0021-9746

Lalonde, Emilie, Ishkanian, Adrian S, Sykes, Jenna, Fraser, Michael, Ross-Adams, Helen, Erho, Nicholas, Dunning, Mark J, Halim, Silvia, Lamb, Alastair D, Moon, Nathalie C, Zafarana, Gaetano, Warren, Anne Y, Meng, Xianyue, Thoms, John, Grzadkowski, Michal R, Berlin, Alejandro, Have, Cherry L, Ramnarine, Varune R, Yao, Cindy Q, Malloff, Chad A and Cooper, Colin (2014) Tumour genomic and microenvironmental heterogeneity as integrated predictors for prostate cancer recurrence: a retrospective study. The Lancet Oncology, 15 (13). 1521–1532. ISSN 1470-2045

Zuo, Jie, Brewer, Daniel, Arlt, Volker M, Cooper, Colin and Phillips, David H (2014) Benzo[a]pyrene-induced DNA adducts and gene expression profiles in target and non-target organs for carcinogenesis in mice. BMC Genomics, 15. ISSN 1471-2164

Ju, Young Seok, Alexandrov, Ludmil B, Gerstung, Moritz, Martincorena, Inigo, Nik-Zainal, Serena, Ramakrishna, Manasa, Davies, Helen R, Papaemmanuil, Elli, Gundem, Gunes, Shlien, Adam, Bolli, Niccolo, Behjati, Sam, Tarpey, Patrick S, Nangalia, Jyoti, Massie, Charles E, Butler, Adam P, Teague, Jon W, Vassiliou, George S, Green, Anthony R, Du, Ming-Qing, Unnikrishnan, Ashwin, Pimanda, John E, Teh, Bin Tean, Munshi, Nikhil, Greaves, Mel, Vyas, Paresh, El-Naggar, Adel K, Santarius, Tom, Collins, V Peter, Grundy, Richard, Taylor, Jack A, Hayes, D Neil, Malkin, David, Foster, Christopher S, Warren, Anne Y, Whitaker, Hayley C, Brewer, Daniel, Eeles, Rosalind, Cooper, Colin, Neal, David, Visakorpi, Tapio, Isaacs, William B, Bova, G Steven, Flanagan, Adrienne M, Futreal, P Andrew, Lynch, Andy G, Chinnery, Patrick F, McDermott, Ultan, Stratton, Michael R, Campbell, Peter J and , ICGC Breast Cancer Group (2014) Origins and functional consequences of somatic mitochondrial DNA mutations in human cancer. eLife, 3. ISSN 2050-084X

Tubio, Jose M C, Li, Yilong, Ju, Young Seok, Martincorena, Inigo, Cooke, Susanna L, Tojo, Marta, Gundem, Gunes, Pipinikas, Christodoulos P, Zamora, Jorge, Raine, Keiran, Menzies, Andrew, Roman-Garcia, Pablo, Fullam, Anthony, Gerstung, Moritz, Shlien, Adam, Tarpey, Patrick S, Papaemmanuil, Elli, Knappskog, Stian, Van Loo, Peter, Ramakrishna, Manasa, Davies, Helen R, Marshall, John, Wedge, David C, Teague, Jon W, Butler, Adam P, Nik-Zainal, Serena, Alexandrov, Ludmil, Behjati, Sam, Yates, Lucy R, Bolli, Niccolo, Mudie, Laura, Hardy, Claire, Martin, Sancha, McLaren, Stuart, O'Meara, Sarah, Anderson, Elizabeth, Maddison, Mark, Gamble, Stephen, Foster, Christopher, Warren, Anne Y, Whitaker, Hayley, Brewer, Daniel, Eeles, Rosalind, Cooper, Colin, Neal, David, Lynch, Andy G, Visakorpi, Tapio, Isaacs, William B, van't Veer, Laura, Caldas, Carlos and , ICGC Breast Cancer Group (2014) Mobile DNA in cancer. Extensive transduction of nonrepetitive DNA mediated by L1 retrotransposition in cancer genomes. Science, 345 (6196). ISSN 0036-8075

Merson, S, Yang, Z H, Brewer, D, Olmos, D, Eichholz, A, McCarthy, F, Fisher, G, Kovacs, G, Berney, D M, Foster, C S, Møller, H, Scardino, P, Cuzick, J, Cooper, C S, Clark, Jeremy and , Transatlantic Prostate Group (2014) Focal amplification of the androgen receptor gene in hormone-naive human prostate cancer. British Journal of Cancer, 110 (6). pp. 1655-1662. ISSN 0007-0920

Cooper, Colin A, Mulder, David T, Allison, Sarah E, Pilar, Ana Victoria C and Coombes, Brian K (2013) The SseC translocon component in Salmonella enterica serovar Typhimurium is chaperoned by SscA. BMC Microbiology, 13.

Tomljenovic-Berube, Ana M, Henriksbo, Brandyn, Porwollik, Steffen, Cooper, Colin A, Tuinema, Brian R, McClelland, Michael and Coombes, Brian K (2013) Mapping and regulation of genes within Salmonella pathogenicity island 12 that contribute to in vivo fitness of Salmonella enterica Serovar Typhimurium. Infection and Immunity, 81 (7). pp. 2394-404. ISSN 0019-9567

Cuzick, J, Yang, Z H, Fisher, G, Tikishvili, E, Stone, S, Lanchbury, J S, Camacho, N, Merson, S, Brewer, D, Cooper, C S, Clark, J, Berney, D M, Møller, H, Scardino, P, Sangale, Z and , Transatlantic Prostate Group (2013) Prognostic value of PTEN loss in men with conservatively managed localised prostate cancer. British Journal of Cancer, 108 (12). pp. 2582-2589. ISSN 0007-0920

Eeles, Rosalind A, Olama, Ali Amin Al, Benlloch, Sara, Saunders, Edward J, Leongamornlert, Daniel A, Tymrakiewicz, Malgorzata, Ghoussaini, Maya, Luccarini, Craig, Dennis, Joe, Jugurnauth-Little, Sarah, Dadaev, Tokhir, Neal, David E, Hamdy, Freddie C, Donovan, Jenny L, Muir, Ken, Giles, Graham G, Severi, Gianluca, Wiklund, Fredrik, Gronberg, Henrik, Haiman, Christopher A, Schumacher, Fredrick, Henderson, Brian E, Le Marchand, Loic, Lindstrom, Sara, Kraft, Peter, Hunter, David J, Gapstur, Susan, Chanock, Stephen J, Berndt, Sonja I, Albanes, Demetrius, Andriole, Gerald, Schleutker, Johanna, Weischer, Maren, Canzian, Federico, Riboli, Elio, Key, Tim J, Travis, Ruth C, Campa, Daniele, Ingles, Sue A, John, Esther M, Hayes, Richard B, Pharoah, Paul D P, Pashayan, Nora, Khaw, Kay-Tee, Stanford, Janet L, Ostrander, Elaine A, Signorello, Lisa B, Thibodeau, Stephen N, Schaid, Dan, Cooper, Colin S and , COGS–Cancer Research UK GWAS–ELLIPSE (part of GAME-ON) Initiativ (2013) Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. Nature Genetics, 45 (4). 385-91, 391e1-2. ISSN 1061-4036

Amin Al Olama, Ali, Kote-Jarai, Zsofia, Schumacher, Fredrick R, Wiklund, Fredrik, Berndt, Sonja I, Benlloch, Sara, Giles, Graham G, Severi, Gianluca, Neal, David E, Hamdy, Freddie C, Donovan, Jenny L, Hunter, David J, Henderson, Brian E, Thun, Michael J, Gaziano, Michael, Giovannucci, Edward L, Siddiq, Afshan, Travis, Ruth C, Cox, David G, Canzian, Federico, Riboli, Elio, Key, Timothy J, Andriole, Gerald, Albanes, Demetrius, Hayes, Richard B, Schleutker, Johanna, Auvinen, Anssi, Tammela, Teuvo L J, Weischer, Maren, Stanford, Janet L, Ostrander, Elaine A, Cybulski, Cezary, Lubinski, Jan, Thibodeau, Stephen N, Schaid, Daniel J, Sorensen, Karina D, Batra, Jyotsna, Clements, Judith A, Chambers, Suzanne, Aitken, Joanne, Gardiner, Robert A, Maier, Christiane, Vogel, Walther, Dörk, Thilo, Brenner, Hermann, Habuchi, Tomonori, Ingles, Sue, John, Esther M, Dickinson, Joanne L, Cooper, Colin S and , UK Genetic Prostate Cancer Study Collaborators/British Associati (2013) A meta-analysis of genome-wide association studies to identify prostate cancer susceptibility loci associated with aggressive and non-aggressive disease. Human Molecular Genetics, 22 (2). pp. 408-415. ISSN 0964-6906

Pilar, Ana Victoria C, Reid-Yu, Sarah A, Cooper, Colin A, Mulder, David T and Coombes, Brian K (2013) Active modification of host inflammation by Salmonella. Gut Microbes, 4 (2). pp. 140-5. ISSN 1949-0976

Rigau, Marina, Olivan, Mireia, Garcia, Marta, Sequeiros, Tamara, Montes, Melania, Colás, Eva, Llauradó, Marta, Planas, Jacques, Torres, Inés de, Morote, Juan, Cooper, Colin, Reventós, Jaume, Clark, Jeremy and Doll, Andreas (2013) The present and future of prostate cancer urine biomarkers. International Journal of Molecular Sciences, 14 (6). pp. 12620-49. ISSN 1422-0067

Olmos, David, Brewer, Daniel, Clark, Jeremy, Danila, Daniel C, Parker, Chris, Attard, Gerhardt, Fleisher, Martin, Reid, Alison Hm, Castro, Elena, Sandhu, Shahneen K, Barwell, Lorraine, Oommen, Nikhil Babu, Carreira, Suzanne, Drake, Charles G, Jones, Robert, Cooper, Colin S, Scher, Howard I and de Bono, Johann S (2012) Prognostic value of blood mRNA expression signatures in castration-resistant prostate cancer:a prospective, two-stage study. The Lancet Oncology, 13 (11). pp. 1114-24. ISSN 1470-2045

Ren, Guoping, Liu, Xiaoyan, Mao, Xueying, Zhang, Yanling, Stankiewicz, Elzbieta, Hylands, Lucy, Song, Rongrong, Berney, Daniel M, Clark, Jeremy, Cooper, Colin and Lu, Yong-Jie (2012) Identification of frequent BRAF copy number gain and alterations of RAF genes in Chinese prostate cancer. Genes, Chromosomes & Cancer, 51 (11). pp. 1014-23. ISSN 1045-2257

Mulder, David T, Cooper, Colin A and Coombes, Brian K (2012) Type VI secretion system-associated gene clusters contribute to pathogenesis of Salmonella enterica serovar Typhimurium. Infection and Immunity, 80 (6). pp. 1996-2007. ISSN 0019-9567

Reid, Alison H M, Attard, Gerhardt, Brewer, Daniel, Miranda, Susana, Riisnaes, Ruth, Clark, Jeremy, Hylands, Lucy, Merson, Sue, Vergis, Roy, Jameson, Charles, Høyer, Søren, Sørenson, Karina Dalsgaard, Borre, Michael, Jones, Chris, de Bono, Johann S and Cooper, Colin S (2012) Novel, gross chromosomal alterations involving PTEN cooperate with allelic loss in prostate cancer. Modern Pathology, 25 (6). pp. 902-10. ISSN 1530-0285

Pilar, Ana Victoria C, Reid-Yu, Sarah A, Cooper, Colin A, Mulder, David T and Coombes, Brian K (2012) GogB is an anti-inflammatory effector that limits tissue damage during Salmonella infection through interaction with human FBXO22 and Skp1. PLoS Pathogens, 8 (6). ISSN 1553-7366

Kote-Jarai, Zsofia, Olama, Ali Amin Al, Giles, Graham G, Severi, Gianluca, Schleutker, Johanna, Weischer, Maren, Campa, Daniele, Riboli, Elio, Key, Tim, Gronberg, Henrik, Hunter, David J, Kraft, Peter, Thun, Michael J, Ingles, Sue, Chanock, Stephen, Albanes, Demetrius, Hayes, Richard B, Neal, David E, Hamdy, Freddie C, Donovan, Jenny L, Pharoah, Paul, Schumacher, Fredrick, Henderson, Brian E, Stanford, Janet L, Ostrander, Elaine A, Sorensen, Karina Dalsgaard, Dörk, Thilo, Andriole, Gerald, Dickinson, Joanne L, Cybulski, Cezary, Lubinski, Jan, Spurdle, Amanda, Clements, Judith A, Chambers, Suzanne, Aitken, Joanne, Gardiner, R A Frank, Thibodeau, Stephen N, Schaid, Dan, John, Esther M, Maier, Christiane, Vogel, Walther, Cooney, Kathleen A, Park, Jong Y, Cannon-Albright, Lisa, Brenner, Hermann, Habuchi, Tomonori, Zhang, Hong-Wei, Lu, Yong-Jie, Kaneva, Radka, Cooper, Colin S and , UK Genetic Prostate Cancer Study Collaborators/British Associati (2011) Seven prostate cancer susceptibility loci identified by a multi-stage genome-wide association study. Nature Genetics, 43 (8). pp. 785-91. ISSN 1061-4036

Bee, Alix, Brewer, Daniel, Beesley, Carol, Dodson, Andrew, Forootan, Shiva, Dickinson, Timothy, Gerard, Patricia, Lane, Brian, Yao, Sheng, Cooper, Colin S, Djamgoz, Mustafa B A, Gosden, Christine M, Ke, Youqiang and Foster, Christopher S (2011) siRNA knockdown of ribosomal protein gene RPL19 abrogates the aggressive phenotype of human prostate cancer. PLoS One, 6 (7). ISSN 1932-6203

Whitaker, Hayley C, Kote-Jarai, Zsofia, Ross-Adams, Helen, Warren, Anne Y, Burge, Johanna, George, Anne, Bancroft, Elizabeth, Jhavar, Sameer, Leongamornlert, Daniel, Tymrakiewicz, Malgorzata, Saunders, Edward, Page, Elizabeth, Mitra, Anita, Mitchell, Gillian, Lindeman, Geoffrey J, Evans, D Gareth, Blanco, Ignacio, Mercer, Catherine, Rubinstein, Wendy S, Clowes, Virginia, Douglas, Fiona, Hodgson, Shirley, Walker, Lisa, Donaldson, Alan, Izatt, Louise, Dorkins, Huw, Male, Alison, Tucker, Kathy, Stapleton, Alan, Lam, Jimmy, Kirk, Judy, Lilja, Hans, Easton, Douglas, Cooper, Colin, Eeles, Rosalind, Neal, David E and , IMPACT Study Steering Committee (2010) The rs10993994 risk allele for prostate cancer results in clinically relevant changes in microseminoprotein-beta expression in tissue and urine. PLoS One, 5 (10). ISSN 1932-6203

Pickard, Mark R, Edwards, Sandra E, Cooper, Colin S and Williams, Gwyn T (2010) Apoptosis regulators Fau and Bcl-G are down-regulated in prostate cancer. The Prostate, 70 (14). pp. 1513-23. ISSN 1097-0045

Vergis, Roy, Corbishley, Catherine M, Thomas, Karen, Horwich, Alan, Huddart, Robert, Khoo, Vincent, Eeles, Ros, Sydes, Matthew R, Cooper, Colin S, Dearnaley, David and Parker, Chris (2010) Expression of Bcl-2, p53, and MDM2 in localized prostate cancer with respect to the outcome of radical radiotherapy dose escalation. International Journal of Radiation Oncology, Biology, Physics, 78 (1). pp. 35-41. ISSN 1879-355X

Battaglia, Sebastiano, Maguire, Orla, Thorne, James L, Hornung, Laura B, Doig, Craig L, Liu, Song, Sucheston, Lara E, Bianchi, Anna, Khanim, Farhat L, Gommersall, Lyndon M, Coulter, Henry S O, Rakha, Serena, Giddings, Ian, O'Neill, Laura P, Cooper, Colin S, McCabe, Christopher J, Bunce, Christopher M and Campbell, Moray J (2010) Elevated NCOR1 disrupts PPARalpha/gamma signaling in prostate cancer and forms a targetable epigenetic lesion. Carcinogenesis, 31 (9). pp. 1650-60. ISSN 0143-3334

Yao, Sheng, Bee, Alix, Brewer, Daniel, Dodson, Andrew, Beesley, Carol, Ke, Youqiang, Ambroisine, Laurence, Fisher, Gabrielle, Møller, Heinrich, Dickinson, Tim, Gerard, Patricia, Lian, Lu-Yu, Risk, Janet, Lane, Brian, Smith, Paul, Reuter, Victor, Berney, Daniel, Gosden, Christine, Scardino, Peter, Cuzick, Jack, Djamgoz, Mustafa B A, Cooper, Colin and Foster, Christopher S (2010) PRKC-ζ Expression Promotes the Aggressive Phenotype of Human Prostate Cancer Cells and Is a Novel Target for Therapeutic Intervention. Genes & Cancer, 1 (5). pp. 444-64. ISSN 1947-6027

Reid, A H M, Attard, G, Ambroisine, L, Fisher, G, Kovacs, G, Brewer, D, Clark, J, Flohr, P, Edwards, S, Berney, D M, Foster, C S, Fletcher, A, Gerald, W L, Møller, H, Reuter, V E, Scardino, P T, Cuzick, J, de Bono, J S, Cooper, C S and , Transatlantic Prostate Group (2010) Molecular characterisation of ERG, ETV1 and PTEN gene loci identifies patients at low and high risk of death from prostate cancer. British Journal of Cancer, 102 (4). pp. 678-684. ISSN 0007-0920

Attard, Gerhardt, de Bono, Johann S, Clark, Jeremy and Cooper, Colin S (2010) Studies of TMPRSS2-ERG gene fusions in diagnostic trans-rectal prostate biopsies. Clinical Cancer Research, 16 (4). 1340; author reply 1340. ISSN 1078-0432

Thomsen, Martin K, Ambroisine, Laurence, Wynn, Sarah, Cheah, Kathryn S E, Foster, Christopher S, Fisher, Gabrielle, Berney, Daniel M, Møller, Henrik, Reuter, Victor E, Scardino, Peter, Cuzick, Jack, Ragavan, Narasimhan, Singh, Paras B, Martin, Francis L, Butler, Christopher M, Cooper, Colin S, Swain, Amanda and , Transatlantic Prostate Group (2010) SOX9 elevation in the prostate promotes proliferation and cooperates with PTEN loss to drive tumor formation. Cancer Research, 70 (3). pp. 979-87. ISSN 0008-5472

Cooper, Colin A, Zhang, Kun, Andres, Sara N, Fang, Yuan, Kaniuk, Natalia A, Hannemann, Mandy, Brumell, John H, Foster, Leonard J, Junop, Murray S and Coombes, Brian K (2010) Structural and biochemical characterization of SrcA, a multi-cargo type III secretion chaperone in Salmonella required for pathogenic association with a host. PLoS Pathogens, 6 (2). ISSN 1553-7366

Kudahetti, Sakunthala C, Fisher, Gabrielle, Ambroisine, Laurence, Prowse, David, Kattan, Michael W, Foster, Christopher S, Møller, Henrik, Oliver, Tim, Fletcher, Anne, Cooper, Colin, Reuter, Victor, Scardino, Peter, Cuzick, Jack, Berney, Daniel M and , Transatlantic Prostate Group (2010) Immunohistochemistry for p16, but not Rb or p21, is an independent predictor of prognosis in conservatively treated, clinically localised prostate cancer. Plant Pathology, 42 (6). pp. 519-23. ISSN 0032-0862

Santarius, Thomas, Shipley, Janet, Brewer, Daniel, Stratton, Michael R. and Cooper, Colin S. (2010) A census of amplified and overexpressed human cancer genes. Nature Reviews, 10 (1). pp. 59-64.

Attard, Gerhardt, Cooper, Colin S and de Bono, Johann S (2009) Steroid hormone receptors in prostate cancer:a hard habit to break? Cancer Cell, 16 (6). pp. 458-62. ISSN 1878-3686

Mitra, Anita, Jameson, Charles, Barbachano, Yolanda, Sanchez, Lydia, Kote-Jarai, Zsofia, Peock, Susan, Sodha, Nayanta, Bancroft, Elizabeth, Fletcher, Anne, Cooper, Colin, Easton, Douglas, Eeles, Rosalind, Foster, Christopher S and , IMPACT Steering Committee and IMPACT and EMBRACE Collaborators (2009) Overexpression of RAD51 occurs in aggressive prostatic cancer. Histopathology, 55 (6). pp. 696-704. ISSN 1365-2559

Attard, Gerhardt, Rizzo, Sian, Ledaki, Ioanna, Clark, Jeremy, Reid, Alison H M, Thompson, Alan, Khoo, Vincent, de Bono, Johann S, Cooper, Colin S and Hudson, David L (2009) A novel, spontaneously immortalized, human prostate cancer cell line, Bob, offers a unique model for pre-clinical prostate cancer studies. The Prostate, 69 (14). pp. 1507-20. ISSN 1097-0045

Al Olama, Ali Amin, Kote-Jarai, Zsofia, Giles, Graham G, Guy, Michelle, Morrison, Jonathan, Severi, Gianluca, Leongamornlert, Daniel A, Tymrakiewicz, Malgorzata, Jhavar, Sameer, Saunders, Ed, Hopper, John L, Southey, Melissa C, Muir, Kenneth R, English, Dallas R, Dearnaley, David P, Ardern-Jones, Audrey T, Hall, Amanda L, O'Brien, Lynne T, Wilkinson, Rosemary A, Sawyer, Emma, Lophatananon, Artitaya, Horwich, Alan, Huddart, Robert A, Khoo, Vincent S, Parker, Christopher C, Woodhouse, Christopher J, Thompson, Alan, Christmas, Tim, Ogden, Chris, Cooper, Colin, Donovan, Jenny L, Hamdy, Freddie C, Neal, David E, Eeles, Rosalind A, Easton, Douglas F and , UK Genetic Prostate Cancer Study Collaborators/British Associati (2009) Multiple loci on 8q24 associated with prostate cancer susceptibility. Nature Genetics, 41 (10). pp. 1058-60. ISSN 1061-4036

Clark, Jeremy P and Cooper, Colin S (2009) ETS gene fusions in prostate cancer. Nature Reviews Urology, 6 (8). pp. 429-39. ISSN 1759-4820

Foster, Christopher S and Cooper, Colin S (2009) Urgent need to develop independent biomarkers for functional, diagnostic and prognostic application in oncology research. Biomarkers in Medicine, 3 (4). pp. 329-33. ISSN 1752-0371

Kudahetti, Sak, Fisher, Gabrielle, Ambroisine, Laurence, Foster, Christopher, Reuter, Victor, Eastham, James, Møller, Henrik, Kattan, Michael W, Cooper, Colin S, Scardino, Peter, Cuzick, Jack and Berney, Daniel M (2009) p53 immunochemistry is an independent prognostic marker for outcome in conservatively treated prostate cancer. BJU International, 104 (1). pp. 20-4. ISSN 1464-4096

Jhavar, Sameer, Brewer, Daniel, Edwards, Sandra, Kote-Jarai, Zsofia, Attard, Gerhardt, Clark, Jeremy, Flohr, Penny, Christmas, Timothy, Thompson, Alan, Parker, Matthew, Shepherd, Christopher, Stenman, Ulf-Hakan, Marchbank, Tania, Playford, Raymond J, Woodhouse, Christopher, Ogden, Christopher, Fisher, Cyril, Kovacs, Gyula, Corbishley, Cathy, Jameson, Charles, Norman, Andy, De-Bono, Johann, Bjartell, Anders, Eeles, Rosalind and Cooper, Colin S (2009) Integration of ERG gene mapping and gene-expression profiling identifies distinct categories of human prostate cancer. BJU International, 103 (9). pp. 1256-69. ISSN 1464-4096

Attard, Gerhardt, Swennenhuis, Joost F, Olmos, David, Reid, Alison H M, Vickers, Elaine, A'Hern, Roger, Levink, Rianne, Coumans, Frank, Moreira, Joana, Riisnaes, Ruth, Oommen, Nikhil Babu, Hawche, George, Jameson, Charles, Thompson, Emilda, Sipkema, Ronald, Carden, Craig P, Parker, Christopher, Dearnaley, David, Kaye, Stan B, Cooper, Colin S, Molina, Arturo, Cox, Michael E, Terstappen, Leon W M M and de Bono, Johann S (2009) Characterization of ERG, AR and PTEN gene status in circulating tumor cells from patients with castration-resistant prostate cancer. Cancer Research, 69 (7). pp. 2912-8. ISSN 0008-5472

Jhavar, S, Bartlett, J, Kovacs, G, Corbishley, C, Dearnaley, D, Eeles, R, Khoo, V, Huddart, R, Horwich, A, Thompson, A, Norman, A, Brewer, D, Cooper, C S and Parker, C (2009) Biopsy tissue microarray study of Ki-67 expression in untreated, localized prostate cancer managed by active surveillance. Prostate Cancer and Prostatic Diseases, 12 (2). pp. 143-147. ISSN 1476-5608

Knight, J F, Shepherd, C J, Rizzo, S, Brewer, D, Jhavar, S, Dodson, A R, Cooper, C S, Eeles, R, Falconer, A, Kovacs, G, Garrett, M D, Norman, A R, Shipley, J and Hudson, D L (2008) TEAD1 and c-Cbl are novel prostate basal cell markers that correlate with poor clinical outcome in prostate cancer. British Journal of Cancer, 99 (11). pp. 1849-1858. ISSN 0007-0920

Cooper, Colin (2008) Editorial comment on:ADAM9 expression is a significant and independent prognostic marker of PSA relapse in prostate cancer. European Urology, 54 (5). pp. 1107-8. ISSN 0302-2838

Attard, Gerhardt, Reid, Alison H M, Yap, Timothy A, Raynaud, Florence, Dowsett, Mitch, Settatree, Sarah, Barrett, Mary, Parker, Christopher, Martins, Vanessa, Folkerd, Elizabeth, Clark, Jeremy, Cooper, Colin S, Kaye, Stan B, Dearnaley, David, Lee, Gloria and de Bono, Johann S (2008) Phase I clinical trial of a selective inhibitor of CYP17, abiraterone acetate, confirms that castration-resistant prostate cancer commonly remains hormone driven. Journal of Clinical Oncology, 26 (28). pp. 4563-71. ISSN 1527-7755

Vergis, Roy, Corbishley, Catherine M, Norman, Andrew R, Bartlett, Jaclyn, Jhavar, Sameer, Borre, Michael, Heeboll, Sara, Horwich, Alan, Huddart, Robert, Khoo, Vincent, Eeles, Ros, Cooper, Colin, Sydes, Matthew, Dearnaley, David and Parker, Chris (2008) Intrinsic markers of tumour hypoxia and angiogenesis in localised prostate cancer and outcome of radical treatment:a retrospective analysis of two randomised radiotherapy trials and one surgical cohort study. The Lancet Oncology, 9 (4). pp. 342-351. ISSN 1470-2045

Eeles, Rosalind A., Kote-Jarai, Zsofia, Giles, Graham G., Olama, Ali Amin Al, Guy, Michelle, Jugurnauth, Sarah K., Mulholland, Shani, Leongamornlert, Daniel A., Edwards, Stephen M., Morrison, Jonathan, Field, Helen I., Southey, Melissa C., Severi, Gianluca, Donovan, Jenny L., Hamdy, Freddie C., Dearnaley, David P., Muir, Kenneth R., Smith, Charmaine, Bagnato, Melisa, Ardern-Jones, Audrey T., Hall, Amanda L., O'Brien, Lynne T., Gehr-Swain, Beatrice N., Wilkinson, Rosemary A., Cox, Angie, Lewis, Sarah, Brown, Paul M., Jhavar, Sameer G., Tymrakiewicz, Malgorzata, Lophatananon, Artitaya, Bryant, Sarah L., Horwich, Alan, Huddart, Robert A., Khoo, Vincent S., Parker, Christopher C., Woodhouse, Christopher J., Thompson, Alan, Christmas, Tim, Ogden, Chris, Fisher, Cyril, Jamieson, Charles, Cooper, Colin S., English, Dallas R., Hopper, John L., Neal, David E. and Easton, Douglas F. (2008) Multiple newly identified loci associated with prostate cancer susceptibility. Nature Genetics, 40 (3). pp. 316-321. ISSN 1546-1718

Jhavar, Sameer, Reid, Alison, Clark, Jeremy, Kote-Jarai, Zsofia, Christmas, Timothy, Thompson, Alan, Woodhouse, Christopher, Ogden, Christopher, Fisher, Cyril, Corbishley, Cathy, De-Bono, Johann, Eeles, Rosalind, Brewer, Daniel and Cooper, Colin (2008) Detection of TMPRSS2-ERG translocations in human prostate cancer by expression profiling using GeneChip Human Exon 1.0 ST arrays. Journal of Molecular Diagnostics, 10 (1). pp. 50-7. ISSN 1525-1578

Attard, G, Clark, J, Ambroisine, L, Fisher, G, Kovacs, G, Flohr, P and Cooper, CS (2008) Duplication of the fusion of TMPRSS2 to ERG sequences identifies fatal human prostate cancer. Oncogene, 27 (3). pp. 253-263. ISSN 1476-5594

Clark, J, Attard, G, Jhavar, S, Flohr, P, Reid, A, De-Bono, J and Cooper, CS (2008) Complex patterns of ETS gene alteration arise during cancer development in the human prostate. Oncogene, 27 (14). pp. 1993-2003. ISSN 1476-5594

Cooper, Colin A, Walsh, Logan A and Damjanovski, Sashko (2007) Peroxisome biogenesis occurs in late dorsal-anterior structures in the development of Xenopus laevis. Developmental Dynamics, 236 (12). pp. 3554-61. ISSN 1058-8388

Walsh, Logan A, Carere, Deanna A, Cooper, Colin A and Damjanovski, Sashko (2007) Membrane type-1 matrix metalloproteinases and tissue inhibitor of metalloproteinases-2 RNA levels mimic each other during Xenopus laevis metamorphosis. PLoS One, 2 (10). ISSN 1932-6203

Walsh, Logan A, Cooper, Colin A and Damjanovski, Sashko (2007) Soluble membrane-type 3 matrix metalloprioteinase causes changes in gene expression and increased gelatinase activity during Xenopus laevis development. International Journal of Developmental Biology, 51 (5). pp. 389-95. ISSN 0214-6282

Cooper, Colin S, Nicholson, Andrew G, Foster, Christopher, Dodson, Andrew, Edwards, Sandra, Fletcher, Anne, Roe, Toby, Clark, Jeremy, Joshi, Anupam, Norman, Andrew, Feber, Andrew, Lin, Dongmei, Gao, Yanning, Shipley, Janet and Cheng, Shu-Jun (2006) Nuclear overexpression of the E2F3 transcription factor in human lung cancer. Lung Cancer, 54 (2). pp. 155-62. ISSN 0169-5002

Mourtada-Maarabouni, Mirna, Keen, Jennifer, Clark, Jeremy, Cooper, Colin S and Williams, Gwyn T (2006) Candidate tumor suppressor LUCA-15/RBM5/H37 modulates expression of apoptosis and cell cycle genes. Experimental Cell Research, 312 (10). pp. 1745-52. ISSN 0014-4827

Perani, Michela, Antonson, Per, Hamoudi, Rifat, Ingram, Catherine J E, Cooper, Colin S, Garrett, Michelle D and Goodwin, Graham H (2005) The proto-oncoprotein SYT interacts with SYT-interacting protein/co-activator activator (SIP/CoAA), a human nuclear receptor co-activator with similarity to EWS and TLS/FUS family of proteins. Journal of Biological Chemistry, 280 (52). pp. 42863-76. ISSN 0021-9258

Olsson, A Yvonne and Cooper, Colin S (2005) The molecular basis of prostate cancer. British Journal of Hospital Medicine, 66 (11). pp. 612-6. ISSN 1750-8460

McIntyre, Alan, Summersgill, Brenda, Grygalewicz, Beata, Gillis, Ad J. M., Stoop, J., van Gurp, Ruud J. H. L. M., Dennis, Nening, Fisher, Cyril, Huddart, Robert, Cooper, Colin, Clark, Jeremy, Oosterhuis, J. Wolter, Looijenga, Leendert H. J. and Shipley, Janet (2005) Amplification and overexpression of the KIT gene is associated with progression in the seminoma subtype of testicular germ cell tumors of adolescents and adults. Cancer Research, 65 (18). pp. 8085-8089. ISSN 0008-5472

Davies, Helen, Hunter, Chris, Smith, Raffaella, Stephens, Philip, Greenman, Christopher, Bignell, Graham, Teague, Jon, Butler, Adam, Edkins, Sarah, Stevens, Claire, Parker, Adrian, O'Meara, Sarah, Avis, Tim, Barthorpe, Syd, Brackenbury, Lisa, Buck, Gemma, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S, Flanagan, Adrienne M, Green, Anthony, Knowles, Maggie, Leung, Suet Y, Looijenga, Leendert H J, Malkowicz, Bruce, Pierotti, Marco A, Teh, Bin T, Yuen, Siu T, Lakhani, Sunil R, Easton, Douglas F, Weber, Barbara L, Goldstraw, Peter, Nicholson, Andrew G, Wooster, Richard, Stratton, Michael R and Futreal, P Andrew (2005) Somatic mutations of the protein kinase gene family in human lung cancer. Cancer Research, 65 (17). pp. 7591-5. ISSN 0008-5472

Stephens, Philip, Edkins, Sarah, Davies, Helen, Greenman, Christopher, Cox, Charles, Hunter, Chris, Bignell, Graham, Teague, Jon, Smith, Raffaella, Stevens, Claire, O'Meara, Sarah, Parker, Adrian, Tarpey, Patrick, Avis, Tim, Barthorpe, Andy, Brackenbury, Lisa, Buck, Gemma, Butler, Adam, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S, Flanagan, Adrienne M, Green, Anthony, Knowles, Maggie, Leung, Suet Y, Looijenga, Leendert H J, Malkowicz, Bruce, Pierotti, Marco A, Teh, Bin, Yuen, Siu T, Nicholson, Andrew G, Lakhani, Sunil, Easton, Douglas F, Weber, Barbara L, Stratton, Michael R, Futreal, P Andrew and Wooster, Richard (2005) A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer. Nature Genetics, 37 (6). pp. 590-592. ISSN 1061-4036

McIntyre, Alan, Summersgill, Brenda, Jafer, Osman, Rodriguez, Sandrine, Zafarana, Gaetano, Oosterhuis, J Wolter, Gillis, Ad Jm, Looijenga, Leendert, Cooper, Colin, Huddart, Robert, Clark, Jeremy and Shipley, Janet (2004) Defining minimum genomic regions of imbalance involved in testicular germ cell tumors of adolescents and adults through genome wide microarray analysis of cDNA clones. Oncogene, 23 (56). pp. 9142-7. ISSN 0950-9232

Lee, Yin-Fai, John, Megan, Falconer, Alison, Edwards, Sandra, Clark, Jeremy, Flohr, Penny, Roe, Toby, Wang, Rubin, Shipley, Janet, Grimer, Robert J, Mangham, D Chas, Thomas, J Meirion, Fisher, Cyril, Judson, Ian and Cooper, Colin S (2004) A gene expression signature associated with metastatic outcome in human leiomyosarcomas. Cancer Research, 64 (20). pp. 7201-4. ISSN 0008-5472

Stephens, Philip, Hunter, Chris, Bignell, Graham, Edkins, Sarah, Davies, Helen, Teague, Jon, Stevens, Claire, O'meara, Sarah, Smith, Raffaella, Parker, Adrian, Barthorpe, Andy, Blow, Matthew, Brackenbury, Lisa, Butler, Adam, Clarke, Oliver, Cole, Jennifer, Dicks, Ed, Dike, Angus, Drozd, Anja, Edwards, Ken, Forbes, Simon, Foster, Rebecca, Gray, Kristian, Greenman, Christopher, Halliday, Kelly, Hills, Katy, Kosmidou, Vivienne, Lugg, Richard, Menzies, Andy, Perry, Janet, Petty, Robert, Raine, Keiran, Ratford, Lewis, Shepherd, Rebecca, Small, Alexandra, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S., Flanagan, Adrienne M., Knowles, Margaret, Leung, Suet Y., Louis, David N., Looijenga, Leendert H. J., Malkowicz, Bruce, Pierotti, Marco A., Teh, Bin, Chenevix-trench, Georgia, Weber, Barbara L., Yuen, Siu T., Harris, Grace, Goldstraw, Peter, Nicholson, Andrew G., Futreal, P. Andrew, Wooster, Richard and Stratton, Michael R. (2004) Lung cancer:intragenic ERBB2 kinase mutations in tumours. Nature, 431 (7008). pp. 525-526. ISSN 0028-0836

Foster, Christopher S, Falconer, Alison, Dodson, Andrew R, Norman, Andrew R, Dennis, Nening, Fletcher, Anne, Southgate, Christine, Dowe, Anna, Dearnaley, David, Jhavar, Sameer, Eeles, Rosalind, Feber, Andrew and Cooper, Colin S (2004) Transcription factor E2F3 overexpressed in prostate cancer independently predicts clinical outcome. Oncogene, 23 (35). pp. 5871-9. ISSN 0950-9232

Feber, Andrew, Clark, Jeremy, Goodwin, Graham, Dodson, Andrew R, Smith, Paul H, Fletcher, Anne, Edwards, Sandra, Flohr, Penny, Falconer, Alison, Roe, Toby, Kovacs, Gyula, Dennis, Nening, Fisher, Cyril, Wooster, Richard, Huddart, Robert, Foster, Christopher S and Cooper, Colin S (2004) Amplification and overexpression of E2F3 in human bladder cancer. Oncogene, 23 (8). pp. 1627-30. ISSN 0950-9232

Perani, Michela, Ingram, Catherine J E, Cooper, Colin S, Garrett, Michelle D and Goodwin, Graham H (2003) Conserved SNH domain of the proto-oncoprotein SYT interacts with components of the human chromatin remodelling complexes, while the QPGY repeat domain forms homo-oligomers. Oncogene, 22 (50). pp. 8156-67. ISSN 0950-9232

Clark, Jeremy, Edwards, Sandra, Feber, Andrew, Flohr, Penny, John, Megan, Giddings, Ian, Crossland, Sue, Stratton, Michael R, Wooster, Richard, Campbell, Colin and Cooper, Colin S (2003) Genome-wide screening for complete genetic loss in prostate cancer by comparative hybridization onto cDNA microarrays. Oncogene, 22 (8). pp. 1247-52. ISSN 0950-9232

Cooper, Colin S (2002) Smoking, lung cancers and their TP53 mutations. Mutagenesis, 17 (4). pp. 279-80. ISSN 0267-8357

Davies, Helen, Bignell, Graham R, Cox, Charles, Stephens, Philip, Edkins, Sarah, Clegg, Sheila, Teague, Jon, Woffendin, Hayley, Garnett, Mathew J, Bottomley, William, Davis, Neil, Dicks, Ed, Ewing, Rebecca, Floyd, Yvonne, Gray, Kristian, Hawes, Rachel, Hughes, Jaime, Kosmidou, Vivian, Menzies, Andrew, Mould, Catherine, Parker, Adrian, Stevens, Claire, Watt, Stephen, Wilson, Rebecca, Jayatilake, Hiran, Gusterson, Barry A, Cooper, Colin, Shipley, Janet, Hargrave, Darren, Pritchard-Jones, Katherine, Maitland, Norman, Chenevix-Trench, Georgia, Riggins, Gregory J, Bigner, Darell D, Palmieri, Giuseppe, Cossu, Antonio, Flanagan, Adrienne, Nicholson, Andrew, Ho, Judy W C, Leung, Suet Y, Yuen, Siu T, Weber, Barbara L, Seigler, Hilliard F, Darrow, Timothy L, Paterson, Hugh, Marais, Richard, Marshall, Christopher J, Wooster, Richard, Stratton, Michael R and Futreal, P Andrew (2002) Mutations of the BRAF gene in human cancer. Nature, 417 (6892). pp. 949-54. ISSN 0028-0836

Clark, Jeremy, Edwards, Sandra, John, Megan, Flohr, Penny, Gordon, Tony, Maillard, Karine, Giddings, Ian, Brown, Carolanne, Bagherzadeh, Azadeh, Campbell, Colin, Shipley, Janet, Wooster, Richard and Cooper, Colin S (2002) Identification of amplified and expressed genes in breast cancer by comparative hybridization onto microarrays of randomly selected cDNA clones. Genes, Chromosomes & Cancer, 34 (1). pp. 104-14. ISSN 1045-2257

Jiang, Jia-Qian, Cooper, Colin and Ouki, Sabeha (2002) Comparison of modified montmorillonite adsorbents. Part I:Preparation, characterization and phenol adsorption. Chemosphere, 47 (7). pp. 711-6. ISSN 0045-6535

Ladanyi, Marc, Antonescu, Cristina R, Leung, Denis H, Woodruff, James M, Kawai, Akira, Healey, John H, Brennan, Murray F, Bridge, Julia A, Neff, James R, Barr, Frederic G, Goldsmith, Jeffrey D, Brooks, John S J, Goldblum, John R, Ali, Syed Z, Shipley, Janet, Cooper, Colin S, Fisher, Cyril, Skytting, Björn and Larsson, Olle (2002) Impact of SYT-SSX fusion type on the clinical behavior of synovial sarcoma:a multi-institutional retrospective study of 243 patients. Cancer Research, 62 (1). pp. 135-40. ISSN 0008-5472

This list was generated on Thu Oct 29 16:55:35 2020 GMT.