Items where Author is "Dalmay, Tamas"

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César-Razquin, Adrián, Casacuberta, Josep, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Federici, Silvia, Jacchia, Sara, Kagkli, Dafni Maria, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Papadopoulou, Nikoletta and European Food Safety Authority (EFSA) (2024) Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants. EFSA Journal, 22 (4). ISSN 1831-4732

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Singh, Archana, Tippett, Victoria L., Tattersall, Luke, Shah, Karan M., Siachisumo, Chileleko, Ward, Nicole J., Thomas, Paul, Carter, Simon, Jeys, Lee, Sumathi, Vaiyapuri, McNamara, Iain R., Elliott, David J., Gartland, Alison, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William D. (2023) YBX1-interacting small RNAs and RUNX2 can be blocked in primary bone cancer using CADD522. Journal of Bone Oncology, 39. ISSN 2212-1374

Alzahrani, Salma, Applegate, Christopher, Swarbreck, David, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Folkes, Leighton and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2022) Degradome assisted plant MicroRNA prediction under alternative annotation criteria. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (6). pp. 3374-3383. ISSN 1545-5963

Billmeier, Martina, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Hall, Adam, Turnbull, Carly, Singh, Archana, Xu, Ping, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2022) Mechanistic insights into non-coding Y RNA processing. RNA Biology, 19 (1). pp. 468-480. ISSN 1547-6286

Ghibaudi, Matilde, Boido, Marina, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Signorino, Elena, Berto, Gaia Elena, Pourshayesteh, Soraya, Singh, Archana, Di Cunto, Ferdinando, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Vercelli, Alessandro (2021) miR-7b-3p exerts a dual role after spinal cord injury, by supporting plasticity and neuroprotection at cortical level. Frontiers in Molecular Biosciences, 8. ISSN 2296-889X

Collins, David H., Wirén, Anders, Labédan, Marjorie, Smith, Michael, Prince, David C., Mohorianu, Irina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Bourke, Andrew F. G. ORCID: https://orcid.org/0000-0001-5891-8816 (2021) Gene expression during larval caste determination and differentiation in intermediately eusocial bumblebees, and a comparative analysis with advanced eusocial honeybees. Molecular Ecology, 30 (3). pp. 718-735. ISSN 0962-1083

Le, Linh, Niu, Lingzi, Barter, Matthew J., Young, David A., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Clark, Ian M. and Swingler, Tracey E. (2020) The role of microRNA-3085 in chondrocyte function. Scientific Reports, 10. ISSN 2045-2322

Woods, Steven, Charlton, Sarah, Cheung, Kathleen, Hao, Yao, Soul, Jamie, Reynard, Louise N., Crowe, Natalie, Swingler, Tracey E., Skelton, Andrew J., Piróg, Katarzyna A., Miles, Colin G., Tsompani, Dimitra, Jackson, Robert M., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Clark, Ian M., Barter, Matt J. and Young, David A. (2020) microRNA-seq of cartilage reveals an over-abundance of miR-140-3p which contains functional isomiRs. RNA, 26 (11). pp. 1575-1588. ISSN 1355-8382

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Eyre, Heather, Singh, Archana, Taylor, Jessica, Chu, Jason, Jeys, Lee, Sumathi, Vaiyapuri, Coonar, Aman, Rassl, Doris, Babur, Muhammad, Forster, Duncan, Alzabin, Saba, Ponthan, Frida, McMahon, Adam, Bigger, Brian, Reekie, Tristan, Kassiou, Michael, Williams, Kaye, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Fraser, William and Finegan, Katherine (2020) Targeting the MAPK7/MMP9 axis for metastasis in primary bone cancer. Oncogene, 39 (33). 5553–5569. ISSN 0950-9232

Prakash, Ved, Singh, Archana, Singh, Ashish Kumar, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chakraborty, Supriya (2020) Tobacco RNA-dependent RNA polymerase 1 affects the expression of defence-related genes in Nicotiana benthamiana upon Tomato leaf curl Gujarat virus infection. Planta, 252 (1). ISSN 0032-0935

Singh, Archana, Mohorianu, Irina-Ioana, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Dasgupta, Indranil and Mukherjee, Sunil (2019) Artificially induced phased siRNAs promote virus resistance in transgenic plants. Virology, 537. pp. 208-215. ISSN 0042-6822

Shaw, Barry, Burrell, Carla, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Navarro-Martinez, Ana, Scott, Daniel, Daroszewska, Ana, van't Hof, Rob, Smith, Lynn, Hargrave, Frank, Mistry, Sharad, Bottrill, Andrew, Kessler, Benedikt, Fisher, Roman, Singh, Archana, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Fraser, William, Henneberger, Kristin, King, Turi, Gonzalez, Silvia and Layfield, Robert (2019) Molecular insights into an ancient form of Paget’s disease of bone. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 116 (21). pp. 10463-10472. ISSN 1091-6490

Fazia, Teresa, Pastorino, Roberta, Notartomaso, Serena, Busceti, Carla, Imbriglio, Tiziana, Cannella, Milena, Gentilini, Davide, Morani, Gabriele, Ticca, Anna, Bitti, Pierpaolo, Berzuini, Carlo, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Battaglia, Giuseppe and Bernardinelli, Luisa (2019) Acid sensing ion channel 2: A new potential player in the pathophysiology of multiple sclerosis. European Journal of Neuroscience, 49 (10). pp. 1233-1243. ISSN 0953-816X

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Singh, Archana, Sanghera, Jasmine, Jeys, Lee, Sumathi, Vaiyapuri, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William D. (2019) Maternally expressed, paternally imprinted, embryonic non-coding RNA are expressed in osteosarcoma, Ewing sarcoma and spindle cell sarcoma. Pathology, 51 (1). pp. 113-116. ISSN 0031-3025

Gonçalves, Odete Sofia Lopes, Wheeler, Guy, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Dai, Houquan, Castro, Miguel, Castro, Patrick, García-Rupérez, Jaime, Ruiz-Tórtola, Ángela, Griol, Amadeu, Hurtado, Juan, Bellieres, Laurent, Bañuls, María José, González, Daniel, López-Guerrero, José Antonio and Neves-Petersen, Maria Teresa (2019) Detection of miRNA cancer biomarkers using light activated Molecular Beacons. RSC Advances, 9 (22). pp. 12766-12783. ISSN 2046-2069

Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Thody, Joshua, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. Bioinformatics, 34 (19). 3382–3384. ISSN 1367-4803

Gyula, Péter, Baksa, Ivett, Tóth, Tamás, Mohorianu, Irina, Dalmay, Tamás ORCID: https://orcid.org/0000-0003-1492-5429 and Szittya, György (2018) Ambient temperature regulates the expression of a small set of sRNAs influencing plant development through NF‐YA2 and YUC2. Plant, Cell and Environment, 41 (10). pp. 2404-2417. ISSN 0140-7791

Ruiz-Tórtola, Ángela, Prats-Quílez, Francisco, Gónzalez-Lucas, Daniel, Bañuls, María-José, Maquieira, Ángel, Wheeler, Guy, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Griol, Amadeu, Hurtado, Juan, Bohlmann, Helge, Götzen, Reiner and García-Rupérez, Jaime (2018) Experimental study of the evanescent-wave photonic sensors response in presence of molecular beacon conformational changes. Journal of Biophotonics, 11 (10). ISSN 1864-063X

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William (2018) The role of small RNAs in Paget's associated osteosarcoma. Journal of Bone Oncology, 13. p. 54. ISSN 2212-1374

Thody, Joshua, Folkes, Leighton, Medina-Calzada, Zahara, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) PAREsnip2: A tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. Nucleic Acids Research, 46 (17). 8730–8739. ISSN 0305-1048

Mohorianu, Irina, Fowler, Emily K., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2018) Control of seminal fluid protein expression via regulatory hubs in Drosophila melanogaster. Proceedings of the Royal Society B: Biological Sciences, 285. ISSN 0962-8452

Ruiz-Tórtola, Ángela, Prats-Quílez, Francisco, González-Lucas, Daniel, Bañuls, María-José, Maquieira, Ángel, Wheeler, Guy, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Griol, Amadeu, Hurtado, Juan and García-Rupérez, Jaime (2018) High sensitivity and label-free oligonucleotides detection using photonic bandgap sensing structures biofunctionalized with molecular beacon probes. Biomedical Optics Express, 9 (4). pp. 1717-1727. ISSN 2156-7085

Fowler, Emily K., Mohorianu, Irina, Smith, Damian T., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2018) Small RNA populations revealed by blocking rRNA fragments in Drosophila melanogaster reproductive tissues. PLoS One, 13 (2). ISSN 1932-6203

Ward, Nicole, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Higgins, Janet, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Wheeler, Grant ORCID: https://orcid.org/0000-0002-4335-8577 (2018) microRNAs associated with early neural crest development in Xenopus laevis. BMC Genomics, 19. ISSN 1471-2164

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Mohorianu, Irina, Piec, Isabelle ORCID: https://orcid.org/0000-0002-0648-1330, Turner, Jeremy, Beadsmoore, Clare, Toms, Andoni, Ball, Richard, Nolan, John, McNamara, Iain, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William D (2017) MicroRNA expression in a phosphaturic mesenchymal tumour. Bone Reports, 7. 63–69. ISSN 2352-1872

Bradley, Desmond, Xu, Ping, Mohorianu, Irina-Ioana, Whibley, Annabel, Field, David, Tavares, Hugo, Couchman, Matthew, Copsey, Lucy, Carpenter, Rosemary, Li, Miaomiao, Li, Qun, Xue, Yongbiao, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Coen, Enrico (2017) Evolution of flower color pattern through selection on regulatory small RNAs. Science, 358 (6365). pp. 925-928. ISSN 0036-8075

Darrington, Michael, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Morrison, Neil I. and Chapman, Tracey (2017) Implementing the sterile insect technique with RNA interference – a review. Entomologia Experimentalis et Applicata, 164 (3). 155–175. ISSN 0013-8703

Paicu, Claudia, Mohorianu, Irina-Ioana, Stocks, Matthew, Xu, Ping, Coince, Aurore, Billmeier, Martina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 (2017) miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. Bioinformatics, 33 (16). 2446–2454. ISSN 1367-4803

Mohorianu, Irina, Bretman, Amanda, Smith, Damian T., Fowler, Emily K., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2017) Comparison of alternative approaches for analysing multi-level RNA-seq data. PLoS One, 12 (8). ISSN 1932-6203

Beckers, Matthew, Mohorianu, Irina-Ioana, Stocks, Matthew, Applegate, Christopher, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2017) Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench. RNA, 23 (6). pp. 823-835. ISSN 1355-8382

Özkan, Selin, Mohorianu, Irina, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Coutts, Robert H. A. (2017) Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses. BMC Genomics, 18. ISSN 1471-2164

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Mohorianu, Irina, McNamara, Iain, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William D. (2017) miR-16 is highly expressed in Paget’s associated osteosarcoma. Endocrine-Related Cancer (ERC), 24 (5). L27-L31. ISSN 1351-0088

Collins, David H., Mohorianu, Irina, Beckers, Matthew, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Bourke, Andrew F. G. ORCID: https://orcid.org/0000-0001-5891-8816 (2017) MicroRNAs associated with caste determination and differentiation in a primitively eusocial insect. Scientific Reports, 7. ISSN 2045-2322

Illana, Adriana, Marconi, Marco, Rodríguez-Romero, Julio, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Wilkinson, Mark D., Ayllón, Maria Ángeles and Sesma, Ane ORCID: https://orcid.org/0000-0003-3982-8932 (2017) Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae. Archives of Virology, 162 (3). 891–895. ISSN 0304-8608

Mathers, Thomas C, Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T, Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J, Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Price, Daniel R G, Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C C, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Swarbreck, David and Hogenhout, Saskia A (2017) Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 18. ISSN 1465-6906

Omidvar, Vahid, Mohorianu, Irina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Zheng, Yi, Fei, Zhangjun, Pucci, Anna, Mazzucato, Andrea, Večeřová, Vendula, Sedlářova, Michaela and Fellner, Martin (2017) Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PLoS One, 12 (2). ISSN 1932-6203

Mohorianu, Irina, Bretman, Amanda, Smith, Damian T., Fowler, Emily K., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2017) Genomic responses to socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals. RNA, 2017 (23). pp. 1048-1059. ISSN 1355-8382

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Fraser, William and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2016) Transfer RNA-derived small RNAs in the cancer transcriptome. Pflügers Archiv European Journal of Physiology, 468 (6). 1041–1047. ISSN 0031-6768

Chiumenti, Michela, Mohorianu, Irina, Roseti, Vincenzo, Saldarelli, Pasquale, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Minafra, Angelantonio (2016) High-throughput-sequencing-based identification of a grapevine fanleaf virus satellite RNA in Vitis vinifera. Archives of Virology, 161 (5). pp. 1401-1403. ISSN 0304-8608

Le, Linh T. T., Swingler, Tracey E., Crowe, Natalie, Vincent, Tonia L., Barter, Matthew J., Donell, Simon T., Delany, Anne M., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Young, David A. and Clark, Ian M. (2016) The microRNA-29 family in cartilage homeostasis and osteoarthritis. Journal of Molecular Medicine, 94 (5). pp. 583-596. ISSN 1432-1440

Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Kimbung Mbandi, Stanley, Jonas, Mario, Tong, Amy Hin Yan, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Katneni, Vinaya Kumar, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Turner, Stephen W., Lok, Si, Christoffels, Alan and Orbán, László (2016) Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genetics, 12 (4). ISSN 1553-7404

Hall, A E, Lu, W-T, Godfrey, J D, Antonov, A V, Paicu, C, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429, Wilczynska, A, Muller, P A J and Bushell, M (2016) The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration. Cell Death & Disease, 7. ISSN 2041-4889

Crowe, Natalie, Swingler, Tracey, Le, Linh, Barter, Matt, Wheeler, Guy, Pais, Helio, Donell, Simon, Young, David, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Clark, Ian (2016) Detecting new microRNAs in human osteoarthritic chondrocytes identifies miR-3085 as a human, chondrocyte-selective, microRNA. Osteoarthritis and Cartilage, 24 (3). pp. 534-543. ISSN 1063-4584

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2016) Microguards and micromessengers of the genome. Heredity, 116. pp. 125-134. ISSN 0018-067X

Ahmed, Ayisha, Ward, Nicole J., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Lopez-Gomollon, Sara, Viaut, Camille, Tomlinson, Matthew L., Patrushev, Ilya, Gilchrist, Michael J., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Dotlic, Dario, Munsterberg, Andrea E. ORCID: https://orcid.org/0000-0002-4577-4240 and Wheeler, Grant N. ORCID: https://orcid.org/0000-0002-4335-8577 (2015) A database of microRNA expression patterns in Xenopus laevis. PLoS One, 10 (10). ISSN 1932-6203

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William (2015) Role of miR-140 in embryonic bone development and cancer. Clinical Science, 129 (10). pp. 863-873. ISSN 0143-5221

Sadd, Ben M, Barribeau, Seth M, Bloch, Guy, De Graaf, Dirk C, Dearden, Peter, Elsik, Christine G, Gadau, Jürgen, Grimmelikhuijzen, Cornelis J. P., Hasselmann, Martin, Lozier, Jeffrey D, Robertson, Hugh M, Smagghe, Guy, Stolle, Eckart, Van Vaerenbergh, Matthias, Waterhouse, Robert M, Bornberg-Bauer, Erich, Klasberg, Steffen, Bennett, Anna K, Câmara, Francisco, Guigó, Roderic, Hoff, Katharina, Mariotti, Marco, Munoz-Torres, Monica, Murphy, Terence, Santesmasses, Didac, Amdam, Gro V, Beckers, Matthew, Beye, Martin, Biewer, Matthias, Bitondi, Márcia M. G., Blaxter, Mark L, Bourke, Andrew F. G. ORCID: https://orcid.org/0000-0001-5891-8816, Brown, Mark Jf, Buechel, Severine D, Cameron, Rossanah, Cappelle, Kaat, Carolan, James C, Christiaens, Olivier, Ciborowski, Kate L, Clarke, David F, Colgan, Thomas J, Collins, David H, Cridge, Andrew G, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Dreier, Stephanie, du Plessis, Louis, Duncan, Elizabeth, Erler, Silvio, Evans, Jay, Falcon, Tiago, Flores, Kevin, Freitas, Flávia C. P., Fuchikawa, Taro, Gempe, Tanja, Hartfelder, Klaus, Hauser, Frank, Helbing, Sophie, Humann, Fernanda C, Irvine, Frano, Jermiin, Lars S, Johnson, Claire E, Johnson, Reed M, Jones, Andrew K, Kadowaki, Tatsuhiko, Kidner, Jonathan H, Koch, Vasco, Köhler, Arian, Kraus, F Bernhard, Lattorff, H Michael G, Leask, Megan, Lockett, Gabrielle A, Mallon, Eamonn B, Antonio, David S Marco, Marxer, Monika, Meeus, Ivan, Moritz, Robin F A, Nair, Ajay, Näpflin, Kathrin, Nissen, Inga, Niu, Jinzhi, Nunes, Francis M. F., Oakeshott, John G, Osborne, Amy, Otte, Marianne, Pinheiro, Daniel G, Rossié, Nina, Rueppell, Olav, Santos, Carolina G, Schmid-Hempel, Regula, Schmitt, Björn D, Schulte, Christina, Simões, Zilá Lp, Soares, Michelle P. M., Swevers, Luc, Winnebeck, Eva C, Wolschin, Florian, Yu, Na, Zdobnov, Evgeny M, Aqrawi, Peshtewani K, Blankenburg, Kerstin P, Coyle, Marcus, Francisco, Liezl, Hernandez, Alvaro G, Holder, Michael, Hudson, Matthew E, Jackson, Laronda, Jayaseelan, Joy, Joshi, Vandita, Kovar, Christie, Lee, Sandra L, Mata, Robert, Mathew, Tittu, Newsham, Irene F, Ngo, Robin, Okwuonu, Geoffrey, Pham, Christopher, Pu, Ling-ling, Saada, Nehad, Santibanez, Jireh, Simmons, Denard, Thornton, Rebecca, Venkat, Aarti, Walden, Kimberly K. O., Wu, Yuan-qing, Debyser, Griet, Devreese, Bart, Asher, Claire, Blommaert, Julie, Chipman, Ariel D, Chittka, Lars, Fouks, Bertrand, Liu, Jisheng, O’Neill, Meaghan P, Sumner, Seirian, Puiu, Daniela, Qu, Jiaxin, Salzberg, Steven L, Scherer, Steven E, Muzny, Donna M, Richards, Stephen, Robinson, Gene E, Gibbs, Richard A, Schmid-Hempel, Paul and Worley, Kim C (2015) The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology, 16. ISSN 1465-6906

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William (2015) Paget's disease of bone-associated osteosarcoma: molecular basis, signs and symptoms, treatment and research. The Paget's Association Newsletter. pp. 6-10.

Trieu, Trung Anh, Calo, Silvia, Nicolás, Francisco E, Vila, Ana, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Torres-Martínez, Santiago, Garre, Victoriano and Ruiz-Vázquez, Rosa M (2015) A non-canonical RNA silencing pathway promotes mRNA degradation in basal fungi. PLoS Genetics, 11 (4). ISSN 1553-7404

Xu, Ping, Billmeier, Martina, Mohorianu, Irina-Ioana, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Fraser, William and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2015) An improved protocol for small RNA library construction using High Definition adapters. Methods in Next Generation Sequencing, 2 (1). ISSN 2084-7173

Fricke, Claudia, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Smith, Damian, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2014) MicroRNAs influence reproductive responses by females to male sex peptide in Drosophila melanogaster. Genetics, 198 (4). pp. 1603-1619. ISSN 1943-2631

Jefferson, Matthew, Donaszi-Ivanov, Andras, Pollen, Sean, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Saalbach, Gerhard and Powell, Penny P. ORCID: https://orcid.org/0000-0002-5347-0490 (2014) Host factors interacting with the pestivirus N erminal protease, Npro are components of the ribonucleoprotein complex. Journal of Virology, 88 (18). pp. 10340-10353. ISSN 0022-538X

Lopez-Gomollon, Sara, Beckers, Matthew, Rathjen, Tina, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Maumus, Florian, Mohorianu, Irina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2014) Global discovery and characterization of small non-coding RNAs in marine microalgae. BMC Genomics, 15 (1). ISSN 1471-2164

Xu, Ping, Mohorianu, Irina, Yang, Li, Zhao, Hansheng, Gao, Zhimin and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2014) Small RNA profile in Moso bamboo root and leaf obtained by high definition adapters. PLoS One, 9 (7). ISSN 1932-6203

Donaszi-Ivanov, Andras, Mohorianu, Irina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Powell, Penny P ORCID: https://orcid.org/0000-0002-5347-0490 (2013) Small RNA analysis in Sindbis virus infected human HEK293 cells. PLoS One, 8 (12). ISSN 1932-6203

Cervantes, María, Vila, Ana, Nicolás, Francisco E., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, de Haro, Juan P., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Torres-Martínez, Santiago and Ruiz-Vázquez, Rosa M. (2013) A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides. PLoS One, 8 (7). ISSN 1932-6203

Mohorianu, Irina-Ioana, Stocks, Matthew Benedict, Wood, John, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biology, 10 (7). pp. 1221-1230. ISSN 1547-6286

Mapleson, Daniel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Lopez-Gomollon, Sara, Mohorianu, Irina, Szittya, Gyorgy, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2012) Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions. Planta, 236 (6). pp. 1875-1887. ISSN 0032-0935

Grimm, Dirk, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and van Rij, Ronald P. (2012) Everybody wins! Poland hosts thrilling competitions of viruses, RNAi and football teams. EMBO Reports, 13 (10). pp. 874-876. ISSN 1469-221X

Folkes, Leighton, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Woolfenden, Hugh C., Stocks, Matthew B., Szittya, Gyorgy, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Research, 40 (13). ISSN 0305-1048

Goljanek-Whysall, Katarzyna, Pais, Helio, Rathjen, Tina, Sweetman, Dylan, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 (2012) Regulation of multiple target genes by miR-1 and miR-206 is pivotal for C2C12 myoblast differentiation. Journal of Cell Science, 125 (15). pp. 3590-3600. ISSN 0021-9533

Matthewman, Colette A., Kawashima, Cintia G., Húska, Dalibor, Csorba, Tibor, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Kopriva, Stanislav (2012) miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis. FEBS Letters, 586 (19). pp. 3242-3248. ISSN 1873-3468

Mohorianu, Irina, Lopez-Gomollon, Sara, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2012) FiRePat-finding regulatory patterns between sRNAs and genes. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 2 (3). pp. 273-284.

Nicolas Molina, Francisco, Hall, Adam E., Csorba, Tibor, Turnbull, Carly and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2012) Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Letters, 586 (8). pp. 1226-1230. ISSN 1873-3468

Song, Jian Bo, Huang, Si Qi, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Yang, Zhi Min (2012) Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Plant and Cell Physiology, 53 (7). pp. 1283-1294. ISSN 0032-0781

Sorefan, Karim, Pais, Helio, Hall, Adam E, Kozomara, Ana, Griffiths-jones, Sam, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2012) Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence, 3 (1).

Stocks, Matthew B., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Mapleson, Daniel, Woolfenden, Hugh C., Mohorianu, Irina, Folkes, Leighton, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics, 28 (15). pp. 2059-2061. ISSN 1367-4803

Swingler, Tracey E., Wheeler, Guy, Carmont, Virginia, Elliott, Hannah R., Barter, Matthew J., Abu-Elmagd, Muhammad, Donell, Simon T., Boot-Handford, Raymond P., Hajihosseini, Mohammad K., Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Young, David A. and Clark, Ian M. (2012) The expression and function of microRNAs in chondrogenesis and osteoarthritis. Arthritis & Rheumatism, 64 (6). pp. 1909-1919. ISSN 1529-0131

Goljanek-Whysall, Katarzyna, Sweetman, Dylan, Abu-Elmagd, Muhammad, Chapnik, Elik, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Hornstein, Eran and Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 (2011) MicroRNA regulation of the paired-box transcription factor Pax3 confers robustness to developmental timing of myogenesis. Proceedings of the National Academy of Sciences, 108 (29). pp. 11936-11941. ISSN 0027-8424

Nicolas, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2011) mRNA expression profiling reveals conserved and non-conserved miR-140 targets. RNA Biology, 8 (4). pp. 607-615. ISSN 1547-6286

Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Szittya, G, Sorefan, K, Moulton, V ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429 (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. The Plant Journal, 67 (2). pp. 232-246. ISSN 1365-313X

Kawashima, Cintia G., Matthewman, Colette A., Huang, Siqi, Lee, Bok-Rye, Yoshimoto, Naoko, Koprivova, Anna, Rubio-Somoza, Ignacio, Todesco, Marco, Rathjen, Tina, Saito, Kazuki, Takahashi, Hideki, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Kopriva, Stanislav (2011) Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis. The Plant Journal, 66 (5). pp. 863-876. ISSN 1365-313X

Surridge, Alison K., Lopez-Gomollon, Sara, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Maroja, Luana S., Rathjen, Tina, Nadeau, Nicola J., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Jiggins, Chris D. (2011) Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics, 12. ISSN 1471-2164

Nicolas, Francisco, Lopez-Gomollon, Sara, Lopez-Martinez, Alfonso and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2011) Silencing human cancer: Identification and uses of microRNAs. Recent Patents on Anti-Cancer Drug Discovery, 6 (1). pp. 94-105. ISSN 2212-3970

Lopez-Gomollon, Sara and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2010) Recent patents in RNA silencing in plants: Constructs, methods and applications in plant biotechnology. Recent Patents on DNA & Gene Sequences, 4 (3). pp. 155-166.

Szittya, Gyorgy, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Burgyan, Jozsef and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2010) Structural and functional analysis of viral siRNAs. PLoS Pathogens, 6 (4). ISSN 1553-7374

Pais, Helio, Nicolas, Francisco Esteban, Soond, Surinder M., Swingler, Tracey E., Clark, Ian M., Chantry, Andrew, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2010) Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level. RNA, 16 (3). pp. 489-494. ISSN 1355-8382

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2010) Short RNAs in Tomato. Journal of Integrative Plant Biology, 52 (4). pp. 388-392. ISSN 1744-7909

Ho, Thien, Wang, Liang, Huang, Linfeng, Li, Zhigang, Pallett, Denise W., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Ohshima, Kazusato, Walsh, John A. and Wang, Hui (2010) Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Protein & Cell, 1 (9). pp. 847-858. ISSN 1674-800X

Nicolas, Francisco Esteban, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, de Haro, Juan P., Calo, Silvia, Grigoriev, Igor V., Torres-Martinez, Santiago, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Ruiz-Vazquez, Rosa M. and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Research, 38 (16). pp. 5535-5541. ISSN 0305-1048

Pantaleo, Vitantonio, Saldarelli, Pasquale, Miozzi, Laura, Giampetruzzi, Annalisa, Gisel, Andreas, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Bisztray, György and Burgyan, Jozsef (2010) Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology, 408 (1). pp. 49-56. ISSN 1096-0341

Pantaleo, Vitantonio, Szittya, György, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Miozzi, Laura, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Burgyan, Jozsef (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. The Plant Journal, 62 (6). pp. 960-976. ISSN 1365-313X

Trindade, Inês, Capitaeo, Cláudio, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Fevereiro, Manuel Pedro and dos Santos, Manuel Pedro (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta, 231 (3). pp. 705-716.

Navarro, Beatriz, Pantaleo, Vitantonio, Gisel, Andreas, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Bisztray, György, Di Serio, Francesco and Burgyán, József (2009) Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS One, 4 (11). ISSN 1932-6203

Rathjen, Tina, Pais, Helio, Sweetman, Dylan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) High throughput sequencing of microRNAs in chicken somites. FEBS Letters, 583 (9). pp. 1422-1426. ISSN 1873-3468

Kawashima, Cintia Goulart, Yoshimoto, Naoko, Maruyama-Nakashita, Akiko, Tsuchiya, Yumiko N., Saito, Kazuki, Takahashi, Hideki and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. The Plant Journal, 57 (2). pp. 313-321. ISSN 1365-313X

Johnston, Ian A., Lee, Hung-Tai, Macqueen, Daniel J., Paranthaman, Karthikeyani, Kawashima, Cintia, Anwar, Attia, Kinghorn, James R. and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genomewide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes. Journal of Experimental Biology, 212. pp. 1781-1793. ISSN 1477-9145

Lewis, Morag A., Quint, Elizabeth, Glazier, Anne M., Fuchs, Helmut, De Angelis, Martin Hrabé, Langford, Cordelia, van Dongen, Stijn, Abreu-Goodger, Cei, Piipari, Matias, Redshaw, Nick, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Moreno-Pelayo, Miguel Angel, Enright, Anton J. and Steel, Karen P. (2009) An ENU-induced mutation of a miRNA associated with progressive hearing loss. Nature Genetics, 41 (5). pp. 614-618. ISSN 1546-1718

Mencia, Ángeles, Modamio-Hoybjor, Silvia, Redshaw, Nick, Morin, Matías, Mayo-Merino, Fernando, Olavarrieta, Leticia, Aguirre, Luis A., del Castillo, Ignacio, Steel, Karen P., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Moreno, Felipe and Moreno-Pelayo, Miguel Ángel (2009) Mutations in the seed region of the human miR-96 are responsible for non-syndromic progressive hearing loss. Nature Genetics, 41 (5). pp. 609-613. ISSN 1546-1718

Nicolas, Francisco E., Lopez-Gomollon, Sara, Lopez-Martinez, Alfonso F. and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) RNA Silencing: Recent Developments on miRNAs. Recent Patents on DNA & Gene Sequences, 3 (2). pp. 77-87.

Redshaw, Nicholas, Wheeler, Guy, Hajihosseini, Mohammad K. and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) microRNA-449 is a putative regulator of choroid plexus development and function. Brain Research, 1250. pp. 20-26. ISSN 1872-6240

Schwach, Frank, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Briefings in Functional Genomics and Proteomics, 8 (6). pp. 472-481. ISSN 1473-9550

Szittya, György, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Santos, Dulce M., Jing, Runchan, Fevereiro, Manuel P. S., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9. ISSN 1471-2164

Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Jing, Runchan, Szittya, Gyorgy, Schwach, Frank, Rusholme Pilcher, Rachel L., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Nicolas Molina, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140. RNA, 14. pp. 2513-2520. ISSN 1469-9001

Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429 (2008) MicroRNAs and cancer. Journal of Internal Medicine, 263 (4). pp. 366-375. ISSN 1365-2796

Ho, Thien, Rusholme Pilcher, Rachel L., Edwards, Mary-Lou, Cooper, Ian, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Wang, Hui (2008) Evidence for GC preference by monocot Dicer-like proteins. Biochemical and Biophysical Research Communications, 368 (2). pp. 433-437. ISSN 1090-2104

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) Identification of genes targeted by microRNAs. Biochemical Society Transactions, 36. pp. 1194-1196. ISSN 1470-8752

Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, MacLean, Dan, Studholme, David J. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Sweetman, Dylan, Goljanek, Katarzyna, Rathjen, Tina, Oustanina, Svetlana, Braun, Thomas, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 (2008) Specific requirements of MRFs for the expression of muscle specific microRNAs, miR-1, miR-206 and miR-133. Developmental Biology, 321 (2). pp. 491-499. ISSN 1095-564X

Csorba, Tibor, Bovi, Aurelie, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Burgyan, József (2007) The p122 subunit of Tobacco mosaic virus replicase is a potent silencing suppressor and compromises both siRNA and miRNA mediated pathways. Journal of Virology, 81 (21). pp. 11768-11780. ISSN 0022-538X

Herbandez-Pinzon, Inmaculada, Yelina, Nataliya E., Schwach, Frank, Studholme, David J., Baulcombe, David and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2007) SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. The Plant Journal, 50 (1). pp. 140-148. ISSN 0960-7412

Ho, Thien, Wang, Hui, Pallett, Denise and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2007) Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins. FEBS Letters, 581 (17). pp. 3267-3272. ISSN 0014-5793

Phillips, Jonathan R., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Bartels, Dorothea (2007) The role of small RNAs in abiotic stress. FEBS Letters, 581 (19). pp. 3592-3597. ISSN 0014-5793

Rusholme Pilcher, Rachel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Pakseresht, Nima, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2007) Identification of novel short RNAs in tomato (Solanum lycopersicum). Planta, 226 (3). pp. 709-717. ISSN 0032-0935

Wheeler, Guy, Voloczi, Anna, Havelda, Zoltan and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2007) In situ detection of animal and plant miRNAs. DNA and Cell Biology, 26. pp. 251-255. ISSN 1557-7430

Ho, Thien, Pallett, Denise, Rusholme, Rachel, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Wang, Hui (2006) A simplified method for cloning of short interfering RNAs from Brassica juncea infected with Turnip mosaic potyvirus and Turnip crinkle carmovirus. Journal of Virological Methods, 136 (1-2). pp. 217-223. ISSN 1879-0984

Sweetman, Dylan, Rathjen, Tina, Jefferson, Matthew, Wheeler, Guy, Smith, Terence G, Wheeler, Grant N ORCID: https://orcid.org/0000-0002-4335-8577, Münsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2006) FGF-4 signaling is involved in mir-206 expression in developing somites of chicken embryos. Developmental Dynamics, 235 (8). pp. 2185-2191. ISSN 1097-0177

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2006) Short RNAs in environmental adaptation. Proceedings of the Royal Society B: Biological Sciences, 273 (1594). pp. 1579-1585. ISSN 0962-8452

Dalmay, T. ORCID: https://orcid.org/0000-0003-1492-5429 and Edwards, D.R. ORCID: https://orcid.org/0000-0002-3292-2064 (2006) MicroRNAs and the Hallmarks of Cancer. Oncogene, 25. pp. 6170-6175. ISSN 1476-5594

Rathjen, Tina, Nichol, Clare, McConkey, Glenn and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2006) Analysis of short RNAs in the malaria parasite and its red blood cell host. FEBS Letters, 580 (22). pp. 5185-5188. ISSN 1873-3468

Tuddenham, Lee, Wheeler, Guy, Ntouniafousara, Sofia, Waters, Jasmine, Hajihosseini, Mohammad, Clark, Ian and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2006) The cartilage specific microRNA-140 targets histone deacetylase 4 in mouse cells. FEBS Letters, 580 (17). pp. 4214-4217. ISSN 1873-3468

Wheeler, Guy, Ntonuia-Fousara, Sofia, Granda, Begona, Rathjen, Tina and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2006) Identification of new central nervous system specific mouse microRNAs. FEBS Letters, 580 (9). pp. 2195-2200. ISSN 1873-3468

Herr, A. J., Jensen, M. B., Dalmay, T. ORCID: https://orcid.org/0000-0003-1492-5429 and Baulcombe, D. C. (2005) RNA polymerase IV directs silencing of endogenous DNA. Science, 308 (5718). pp. 118-120. ISSN 0036-8075

Szittya, György, Silhavy, Dániel, Dalmay, Tamás ORCID: https://orcid.org/0000-0003-1492-5429 and Burgyán, József (2002) Size-dependent cell-to-cell movement of defective interfering RNAs of Cymbidium ringspot virus. Journal of General Virology, 83 (6). pp. 1505-1510. ISSN 1465-2099

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Horsefield, Rob, Braunstein, Thomas Hartig and Baulcombe, David C. (2001) SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. The EMBO Journal, 20 (8). pp. 2069-2077. ISSN 0261-4189

Book Section

Pais, Helio, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: RNA Infrastructure and Networks. Advances in Experimental Medicine and Biology, 722 . Springer, pp. 239-254. ISBN 978-1-4939-4254-1

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2010) Detection of small non-coding RNAs. In: Plant Developmental Biology. Molecular Biology, 655 . Humana Press, 265–274. ISBN 1064-3745

Pais, H, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, V ORCID: https://orcid.org/0000-0001-9371-6435 (2010) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: Non-coding RNA networks. Landes Bioscience. ISBN 978-1-4614-0331-9

Dalmay, T (2008) MicroRNAs. In: Encyclopedia of Cancer. Springer (Humana Press). ISBN 9783540368472

Ho, Thien X., Rusholme, Rachel, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Wang, Hui (2008) Cloning of short interfering RNAs from virus-infected plants. In: Plant Virology Protocols II. Springer, New York, pp. 229-241. ISBN 9781588298270

Szittya, G, Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429 and Burgyan, J (2008) Plant Antiviral Defense: Gene Silencing Pathway. In: Encyclopedia of Virology. Elsevier, pp. 141-149. ISBN 0123739357

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2005) Virus Induced Gene Silencing. In: Plant Epigenetics. Blackwell Publishing Ltd, pp. 223-237.

Monograph

Sweetman, D, Goljanek, K, Rathjen, T, Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429 and Munsterberg, A ORCID: https://orcid.org/0000-0002-4577-4240 (2009) MicroRNAs in muscle development. Working Paper. UNSPECIFIED.

Book

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2017) Plant gene silencing:Mechanisms and applications. CABI International. ISBN 978-178064767-8

Dalmay, Tamas, ed. (2017) MicroRNA Detection and Target Identification:Methods and Protocols. Methods in Molecular Biology (1). Humana Press. ISBN 978-1-4939-6864-0

Dalmay, T (2011) MicroRNAs in Development: Methods and Protocols. Methods in Molecular Biology . Humana Press. ISBN 1617790826

This list was generated on Wed Apr 24 22:32:42 2024 UTC.