Items where Author is "Dalmay, Tamas"

Kong, Xiangjin, Peng, Kuan, Shan, Youxia, Yun, Ze, Dalmay, Tamas, Duan, Xuewu, Jiang, Yueming, Qu, Hongxia and Zhu, Hong (2025) Transcriptional regulation of mir528-PPO module by mir156 targeted spls orchestrates chilling response in banana. Molecular Horticulture, 5. ISSN 2730-9401

Medina-Calzada, Zahara, Jing, Runchun, Moxon, Simon, Zhu, Hong, Xu, Ping and Dalmay, Tamas (2025) An intron-split microRNA mediates cleavage of the mRNA encoded by low phosphate root in Solanaceae. Planta, 261 (2). ISSN 0032-0935

Prince, David C., Wirén, Anders, Huggins, Timothy J., Collins, David H., Dalmay, Tamas and Bourke, Andrew F. G. (2024) Molecular basis of eusocial complexity: The case of worker reproductivity in bees. Genome Biology and Evolution, 16 (12). ISSN 1759-6653

César-Razquin, Adrián, Casacuberta, Josep, Dalmay, Tamas, Federici, Silvia, Jacchia, Sara, Kagkli, Dafni Maria, Moxon, Simon and Papadopoulou, Nikoletta and European Food Safety Authority (EFSA) (2024) Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants. EFSA Journal, 22 (4). ISSN 1831-4732

Green, Darrell, Singh, Archana, Tippett, Victoria L., Tattersall, Luke, Shah, Karan M., Siachisumo, Chileleko, Ward, Nicole J., Thomas, Paul, Carter, Simon, Jeys, Lee, Sumathi, Vaiyapuri, McNamara, Iain R., Elliott, David J., Gartland, Alison, Dalmay, Tamas and Fraser, William D. (2023) YBX1-interacting small RNAs and RUNX2 can be blocked in primary bone cancer using CADD522. Journal of Bone Oncology, 39. ISSN 2212-1374

Alzahrani, Salma, Applegate, Christopher, Swarbreck, David, Dalmay, Tamas, Folkes, Leighton and Moulton, Vincent (2022) Degradome assisted plant MicroRNA prediction under alternative annotation criteria. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (6). pp. 3374-3383. ISSN 1545-5963

Billmeier, Martina, Green, Darrell, Hall, Adam, Turnbull, Carly, Singh, Archana, Xu, Ping, Moxon, Simon and Dalmay, Tamas (2022) Mechanistic insights into non-coding Y RNA processing. RNA Biology, 19 (1). pp. 468-480. ISSN 1547-6286

Ghibaudi, Matilde, Boido, Marina, Green, Darrell, Signorino, Elena, Berto, Gaia Elena, Pourshayesteh, Soraya, Singh, Archana, Di Cunto, Ferdinando, Dalmay, Tamas and Vercelli, Alessandro (2021) miR-7b-3p exerts a dual role after spinal cord injury, by supporting plasticity and neuroprotection at cortical level. Frontiers in Molecular Biosciences, 8. ISSN 2296-889X

Collins, David H., Wirén, Anders, Labédan, Marjorie, Smith, Michael, Prince, David C., Mohorianu, Irina, Dalmay, Tamas and Bourke, Andrew F. G. (2021) Gene expression during larval caste determination and differentiation in intermediately eusocial bumblebees, and a comparative analysis with advanced eusocial honeybees. Molecular Ecology, 30 (3). pp. 718-735. ISSN 0962-1083

Le, Linh, Niu, Lingzi, Barter, Matthew J., Young, David A., Dalmay, Tamas, Clark, Ian M. and Swingler, Tracey E. (2020) The role of microRNA-3085 in chondrocyte function. Scientific Reports, 10. ISSN 2045-2322

Woods, Steven, Charlton, Sarah, Cheung, Kathleen, Hao, Yao, Soul, Jamie, Reynard, Louise N., Crowe, Natalie, Swingler, Tracey E., Skelton, Andrew J., Piróg, Katarzyna A., Miles, Colin G., Tsompani, Dimitra, Jackson, Robert M., Dalmay, Tamas, Clark, Ian M., Barter, Matt J. and Young, David A. (2020) microRNA-seq of cartilage reveals an over-abundance of miR-140-3p which contains functional isomiRs. RNA, 26 (11). pp. 1575-1588. ISSN 1355-8382

Green, Darrell, Eyre, Heather, Singh, Archana, Taylor, Jessica, Chu, Jason, Jeys, Lee, Sumathi, Vaiyapuri, Coonar, Aman, Rassl, Doris, Babur, Muhammad, Forster, Duncan, Alzabin, Saba, Ponthan, Frida, McMahon, Adam, Bigger, Brian, Reekie, Tristan, Kassiou, Michael, Williams, Kaye, Dalmay, Tamas, Fraser, William and Finegan, Katherine (2020) Targeting the MAPK7/MMP9 axis for metastasis in primary bone cancer. Oncogene, 39 (33). 5553–5569. ISSN 0950-9232

Prakash, Ved, Singh, Archana, Singh, Ashish Kumar, Dalmay, Tamas and Chakraborty, Supriya (2020) Tobacco RNA-dependent RNA polymerase 1 affects the expression of defence-related genes in Nicotiana benthamiana upon Tomato leaf curl Gujarat virus infection. Planta, 252 (1). ISSN 0032-0935

Singh, Archana, Mohorianu, Irina-Ioana, Green, Darrell, Dalmay, Tamas, Dasgupta, Indranil and Mukherjee, Sunil (2019) Artificially induced phased siRNAs promote virus resistance in transgenic plants. Virology, 537. pp. 208-215. ISSN 0042-6822

Shaw, Barry, Burrell, Carla, Green, Darrell, Navarro-Martinez, Ana, Scott, Daniel, Daroszewska, Ana, van't Hof, Rob, Smith, Lynn, Hargrave, Frank, Mistry, Sharad, Bottrill, Andrew, Kessler, Benedikt, Fisher, Roman, Singh, Archana, Dalmay, Tamas, Fraser, William, Henneberger, Kristin, King, Turi, Gonzalez, Silvia and Layfield, Robert (2019) Molecular insights into an ancient form of Paget’s disease of bone. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 116 (21). pp. 10463-10472. ISSN 1091-6490

Fazia, Teresa, Pastorino, Roberta, Notartomaso, Serena, Busceti, Carla, Imbriglio, Tiziana, Cannella, Milena, Gentilini, Davide, Morani, Gabriele, Ticca, Anna, Bitti, Pierpaolo, Berzuini, Carlo, Dalmay, Tamas, Battaglia, Giuseppe and Bernardinelli, Luisa (2019) Acid sensing ion channel 2: A new potential player in the pathophysiology of multiple sclerosis. European Journal of Neuroscience, 49 (10). pp. 1233-1243. ISSN 0953-816X

Green, Darrell, Singh, Archana, Sanghera, Jasmine, Jeys, Lee, Sumathi, Vaiyapuri, Dalmay, Tamas and Fraser, William D. (2019) Maternally expressed, paternally imprinted, embryonic non-coding RNA are expressed in osteosarcoma, Ewing sarcoma and spindle cell sarcoma. Pathology, 51 (1). pp. 113-116. ISSN 0031-3025

Gonçalves, Odete Sofia Lopes, Wheeler, Guy, Dalmay, Tamas, Dai, Houquan, Castro, Miguel, Castro, Patrick, García-Rupérez, Jaime, Ruiz-Tórtola, Ángela, Griol, Amadeu, Hurtado, Juan, Bellieres, Laurent, Bañuls, María José, González, Daniel, López-Guerrero, José Antonio and Neves-Petersen, Maria Teresa (2019) Detection of miRNA cancer biomarkers using light activated Molecular Beacons. RSC Advances, 9 (22). pp. 12766-12783. ISSN 2046-2069

Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon, Thody, Joshua, Dalmay, Tamas and Moulton, Vincent (2018) The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. Bioinformatics, 34 (19). 3382–3384. ISSN 1367-4803

Gyula, Péter, Baksa, Ivett, Tóth, Tamás, Mohorianu, Irina, Dalmay, Tamás and Szittya, György (2018) Ambient temperature regulates the expression of a small set of sRNAs influencing plant development through NF‐YA2 and YUC2. Plant, Cell and Environment, 41 (10). pp. 2404-2417. ISSN 0140-7791

Ruiz-Tórtola, Ángela, Prats-Quílez, Francisco, Gónzalez-Lucas, Daniel, Bañuls, María-José, Maquieira, Ángel, Wheeler, Guy, Dalmay, Tamas, Griol, Amadeu, Hurtado, Juan, Bohlmann, Helge, Götzen, Reiner and García-Rupérez, Jaime (2018) Experimental study of the evanescent-wave photonic sensors response in presence of molecular beacon conformational changes. Journal of Biophotonics, 11 (10). ISSN 1864-063X

Green, Darrell, Dalmay, Tamas and Fraser, William (2018) The role of small RNAs in Paget's associated osteosarcoma. Journal of Bone Oncology, 13. p. 54. ISSN 2212-1374

Thody, Joshua, Folkes, Leighton, Medina-Calzada, Zahara, Xu, Ping, Dalmay, Tamas and Moulton, Vincent (2018) PAREsnip2: A tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. Nucleic Acids Research, 46 (17). 8730–8739. ISSN 0305-1048

Mohorianu, Irina, Fowler, Emily K., Dalmay, Tamas and Chapman, Tracey (2018) Control of seminal fluid protein expression via regulatory hubs in Drosophila melanogaster. Proceedings of the Royal Society B: Biological Sciences, 285. ISSN 0962-8452

Ruiz-Tórtola, Ángela, Prats-Quílez, Francisco, González-Lucas, Daniel, Bañuls, María-José, Maquieira, Ángel, Wheeler, Guy, Dalmay, Tamas, Griol, Amadeu, Hurtado, Juan and García-Rupérez, Jaime (2018) High sensitivity and label-free oligonucleotides detection using photonic bandgap sensing structures biofunctionalized with molecular beacon probes. Biomedical Optics Express, 9 (4). pp. 1717-1727. ISSN 2156-7085

Fowler, Emily K., Mohorianu, Irina, Smith, Damian T., Dalmay, Tamas and Chapman, Tracey (2018) Small RNA populations revealed by blocking rRNA fragments in Drosophila melanogaster reproductive tissues. PLoS One, 13 (2). ISSN 1932-6203

Ward, Nicole, Green, Darrell, Higgins, Janet, Dalmay, Tamas, Munsterberg, Andrea, Moxon, Simon and Wheeler, Grant (2018) microRNAs associated with early neural crest development in Xenopus laevis. BMC Genomics, 19. ISSN 1471-2164

Green, Darrell, Mohorianu, Irina, Piec, Isabelle, Turner, Jeremy, Beadsmoore, Clare, Toms, Andoni, Ball, Richard, Nolan, John, McNamara, Iain, Dalmay, Tamas and Fraser, William D (2017) MicroRNA expression in a phosphaturic mesenchymal tumour. Bone Reports, 7. 63–69. ISSN 2352-1872

Bradley, Desmond, Xu, Ping, Mohorianu, Irina-Ioana, Whibley, Annabel, Field, David, Tavares, Hugo, Couchman, Matthew, Copsey, Lucy, Carpenter, Rosemary, Li, Miaomiao, Li, Qun, Xue, Yongbiao, Dalmay, Tamas and Coen, Enrico (2017) Evolution of flower color pattern through selection on regulatory small RNAs. Science, 358 (6365). pp. 925-928. ISSN 0036-8075

Darrington, Michael, Dalmay, Tamas, Morrison, Neil I. and Chapman, Tracey (2017) Implementing the sterile insect technique with RNA interference – a review. Entomologia Experimentalis et Applicata, 164 (3). 155–175. ISSN 0013-8703

Paicu, Claudia, Mohorianu, Irina-Ioana, Stocks, Matthew, Xu, Ping, Coince, Aurore, Billmeier, Martina, Dalmay, Tamas, Moulton, Vincent and Moxon, Simon (2017) miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. Bioinformatics, 33 (16). 2446–2454. ISSN 1367-4803

Mohorianu, Irina, Bretman, Amanda, Smith, Damian T., Fowler, Emily K., Dalmay, Tamas and Chapman, Tracey (2017) Comparison of alternative approaches for analysing multi-level RNA-seq data. PLoS One, 12 (8). ISSN 1932-6203

Beckers, Matthew, Mohorianu, Irina-Ioana, Stocks, Matthew, Applegate, Christopher, Dalmay, Tamas and Moulton, Vincent (2017) Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench. RNA, 23 (6). pp. 823-835. ISSN 1355-8382

Özkan, Selin, Mohorianu, Irina, Xu, Ping, Dalmay, Tamas and Coutts, Robert H. A. (2017) Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses. BMC Genomics, 18. ISSN 1471-2164

Green, Darrell, Mohorianu, Irina, McNamara, Iain, Dalmay, Tamas and Fraser, William D. (2017) miR-16 is highly expressed in Paget’s associated osteosarcoma. Endocrine-Related Cancer (ERC), 24 (5). L27-L31. ISSN 1351-0088

Collins, David H., Mohorianu, Irina, Beckers, Matthew, Moulton, Vincent, Dalmay, Tamas and Bourke, Andrew F. G. (2017) MicroRNAs associated with caste determination and differentiation in a primitively eusocial insect. Scientific Reports, 7. ISSN 2045-2322

Illana, Adriana, Marconi, Marco, Rodríguez-Romero, Julio, Xu, Ping, Dalmay, Tamas, Wilkinson, Mark D., Ayllón, Maria Ángeles and Sesma, Ane (2017) Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae. Archives of Virology, 162 (3). 891–895. ISSN 0304-8608

Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock, Swarbreck, David and Hogenhout, Saskia A. (2017) Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 18. ISSN 1474-760X

Omidvar, Vahid, Mohorianu, Irina, Dalmay, Tamas, Zheng, Yi, Fei, Zhangjun, Pucci, Anna, Mazzucato, Andrea, Večeřová, Vendula, Sedlářova, Michaela and Fellner, Martin (2017) Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PLoS One, 12 (2). ISSN 1932-6203

Dalmay, Tamas (2017) Plant gene silencing:Mechanisms and applications. CABI International. ISBN 978-178064767-8

Mohorianu, Irina, Bretman, Amanda, Smith, Damian T., Fowler, Emily K., Dalmay, Tamas and Chapman, Tracey (2017) Genomic responses to socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals. RNA, 2017 (23). pp. 1048-1059. ISSN 1355-8382

Green, Darrell, Fraser, William and Dalmay, Tamas (2016) Transfer RNA-derived small RNAs in the cancer transcriptome. Pflügers Archiv European Journal of Physiology, 468 (6). 1041–1047. ISSN 0031-6768

Chiumenti, Michela, Mohorianu, Irina, Roseti, Vincenzo, Saldarelli, Pasquale, Dalmay, Tamas and Minafra, Angelantonio (2016) High-throughput-sequencing-based identification of a grapevine fanleaf virus satellite RNA in Vitis vinifera. Archives of Virology, 161 (5). pp. 1401-1403. ISSN 0304-8608

Le, Linh T. T., Swingler, Tracey E., Crowe, Natalie, Vincent, Tonia L., Barter, Matthew J., Donell, Simon T., Delany, Anne M., Dalmay, Tamas, Young, David A. and Clark, Ian M. (2016) The microRNA-29 family in cartilage homeostasis and osteoarthritis. Journal of Molecular Medicine, 94 (5). pp. 583-596. ISSN 1432-1440

Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Kimbung Mbandi, Stanley, Jonas, Mario, Tong, Amy Hin Yan, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell, Moxon, Simon, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Katneni, Vinaya Kumar, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamas, Turner, Stephen W., Lok, Si, Christoffels, Alan and Orbán, László (2016) Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genetics, 12 (4). ISSN 1553-7390

Hall, A E, Lu, W-T, Godfrey, J D, Antonov, A V, Paicu, C, Moxon, S, Dalmay, T, Wilczynska, A, Muller, P A J and Bushell, M (2016) The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration. Cell Death & Disease, 7. ISSN 2041-4889

Crowe, Natalie, Swingler, Tracey, Le, Linh, Barter, Matt, Wheeler, Guy, Pais, Helio, Donell, Simon, Young, David, Dalmay, Tamas and Clark, Ian (2016) Detecting new microRNAs in human osteoarthritic chondrocytes identifies miR-3085 as a human, chondrocyte-selective, microRNA. Osteoarthritis and Cartilage, 24 (3). pp. 534-543. ISSN 1063-4584

Green, Darrell, Dalmay, Tamas and Chapman, Tracey (2016) Microguards and micromessengers of the genome. Heredity, 116. pp. 125-134. ISSN 0018-067X

Ahmed, Ayisha, Ward, Nicole J., Moxon, Simon, Lopez-Gomollon, Sara, Viaut, Camille, Tomlinson, Matthew L., Patrushev, Ilya, Gilchrist, Michael J., Dalmay, Tamas, Dotlic, Dario, Munsterberg, Andrea E. and Wheeler, Grant N. (2015) A database of microRNA expression patterns in Xenopus laevis. PLoS One, 10 (10). ISSN 1932-6203

Green, Darrell, Dalmay, Tamas and Fraser, William (2015) Role of miR-140 in embryonic bone development and cancer. Clinical Science, 129 (10). pp. 863-873. ISSN 0143-5221

Sadd, Ben M., Barribeau, Seth M., Bloch, Guy, de Graaf, Dirk C., Dearden, Peter, Elsik, Christine G., Gadau, Jürgen, Grimmelikhuijzen, Cornelis J. P., Hasselmann, Martin, Lozier, Jeffrey D., Robertson, Hugh M., Smagghe, Guy, Stolle, Eckart, van Vaerenbergh, Matthias, Waterhouse, Robert M., Bornberg-Bauer, Erich, Klasberg, Steffen, Bennett, Anna K., Câmara, Francisco, Guigó, Roderic, Hoff, Katharina, Mariotti, Marco, Munoz-Torres, Monica, Murphy, Terence, Santesmasses, Didac, Amdam, Gro V., Beckers, Matthew, Beye, Martin, Biewer, Matthias, Bitondi, Márcia M. G., Blaxter, Mark L., Bourke, Andrew F. G., Brown, Mark J. F., Buechel, Severine D., Cameron, Rossanah, Cappelle, Kaat, Carolan, James C., Christiaens, Olivier, Ciborowski, Kate L., Clarke, David F., Colgan, Thomas J., Collins, David H., Cridge, Andrew G., Dalmay, Tamas, Dreier, Stephanie, du Plessis, Louis, Duncan, Elizabeth, Erler, Silvio, Evans, Jay, Falcon, Tiago, Flores, Kevin, Freitas, Flávia C. P., Fuchikawa, Taro, Gempe, Tanja, Hartfelder, Klaus, Hauser, Frank, Helbing, Sophie, Humann, Fernanda C., Irvine, Frano, Jermiin, Lars S., Johnson, Claire E., Johnson, Reed M., Jones, Andrew K., Kadowaki, Tatsuhiko, Kidner, Jonathan H., Koch, Vasco, Köhler, Arian, Kraus, F Bernhard, Lattorff, H. Michael G., Leask, Megan, Lockett, Gabrielle A., Mallon, Eamonn B., Antonio, David S. Marco, Marxer, Monika, Meeus, Ivan, Moritz, Robin F. A., Nair, Ajay, Näpflin, Kathrin, Nissen, Inga, Niu, Jinzhi, Nunes, Francis M. F., Oakeshott, John G., Osborne, Amy, Otte, Marianne, Pinheiro, Daniel G., Rossié, Nina, Rueppell, Olav, Santos, Carolina G., Schmid-Hempel, Regula, Schmitt, Björn D., Schulte, Christina, Simões, Zilá Lp, Soares, Michelle P. M., Swevers, Luc, Winnebeck, Eva C., Wolschin, Florian, Yu, Na, Zdobnov, Evgeny M., Aqrawi, Peshtewani K., Blankenburg, Kerstin P., Coyle, Marcus, Francisco, Liezl, Hernandez, Alvaro G., Holder, Michael, Hudson, Matthew E., Jackson, Laronda, Jayaseelan, Joy, Joshi, Vandita, Kovar, Christie, Lee, Sandra L., Mata, Robert, Mathew, Tittu, Newsham, Irene F., Ngo, Robin, Okwuonu, Geoffrey, Pham, Christopher, Pu, Ling-Ling, Saada, Nehad, Santibanez, Jireh, Simmons, Denard, Thornton, Rebecca, Venkat, Aarti, Walden, Kimberly K. O., Wu, Yuan-Qing, Debyser, Griet, Devreese, Bart, Asher, Claire, Blommaert, Julie, Chipman, Ariel D., Chittka, Lars, Fouks, Bertrand, Liu, Jisheng, O'Neill, Meaghan P., Sumner, Seirian, Puiu, Daniela, Qu, Jiaxin, Salzberg, Steven L., Scherer, Steven E., Muzny, Donna M., Richards, Stephen, Robinson, Gene E., Gibbs, Richard A., Schmid-Hempel, Paul and Worley, Kim C. (2015) The genomes of two key bumblebee species with primitive eusocial organization. Genome Biology, 16. ISSN 1474-760X

Green, Darrell, Dalmay, Tamas and Fraser, William (2015) Paget's disease of bone-associated osteosarcoma: molecular basis, signs and symptoms, treatment and research. The Paget's Association Newsletter. pp. 6-10.

Trieu, Trung Anh, Calo, Silvia, Nicolás, Francisco E., Vila, Ana, Moxon, Simon, Dalmay, Tamas, Torres-Martínez, Santiago, Garre, Victoriano and Ruiz-Vázquez, Rosa M. (2015) A non-canonical RNA silencing pathway promotes mRNA degradation in basal fungi. PLoS Genetics, 11 (4). ISSN 1553-7390

Xu, Ping, Billmeier, Martina, Mohorianu, Irina-Ioana, Green, Darrell, Fraser, William and Dalmay, Tamas (2015) An improved protocol for small RNA library construction using High Definition adapters. Methods in Next Generation Sequencing, 2 (1). ISSN 2084-7173

Fricke, Claudia, Green, Darrell, Smith, Damian, Dalmay, Tamas and Chapman, Tracey (2014) MicroRNAs influence reproductive responses by females to male sex peptide in Drosophila melanogaster. Genetics, 198 (4). pp. 1603-1619. ISSN 1943-2631

Jefferson, Matthew, Donaszi-Ivanov, Andras, Pollen, Sean, Dalmay, Tamas, Saalbach, Gerhard and Powell, Penny P. (2014) Host factors interacting with the pestivirus N erminal protease, Npro are components of the ribonucleoprotein complex. Journal of Virology, 88 (18). pp. 10340-10353. ISSN 0022-538X

Lopez-Gomollon, Sara, Beckers, Matthew, Rathjen, Tina, Moxon, Simon, Maumus, Florian, Mohorianu, Irina, Moulton, Vincent, Dalmay, Tamas and Mock, Thomas (2014) Global discovery and characterization of small non-coding RNAs in marine microalgae. BMC Genomics, 15 (1). ISSN 1471-2164

Xu, Ping, Mohorianu, Irina, Yang, Li, Zhao, Hansheng, Gao, Zhimin and Dalmay, Tamas (2014) Small RNA profile in Moso bamboo root and leaf obtained by high definition adapters. PLoS One, 9 (7). ISSN 1932-6203

Donaszi-Ivanov, Andras, Mohorianu, Irina, Dalmay, Tamas and Powell, Penny P (2013) Small RNA analysis in Sindbis virus infected human HEK293 cells. PLoS One, 8 (12). ISSN 1932-6203

Cervantes, María, Vila, Ana, Nicolás, Francisco E., Moxon, Simon, de Haro, Juan P., Dalmay, Tamas, Torres-Martínez, Santiago and Ruiz-Vázquez, Rosa M. (2013) A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides. PLoS One, 8 (7). ISSN 1932-6203

Mohorianu, Irina-Ioana, Stocks, Matthew Benedict, Wood, John, Dalmay, Tamas and Moulton, Vincent (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biology, 10 (7). pp. 1221-1230. ISSN 1547-6286

Mapleson, Daniel, Moxon, Simon, Dalmay, Tamas and Moulton, Vincent (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Lopez-Gomollon, Sara, Mohorianu, Irina, Szittya, Gyorgy, Moulton, Vincent and Dalmay, Tamas (2012) Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions. Planta, 236 (6). pp. 1875-1887. ISSN 0032-0935

Grimm, Dirk, Dalmay, Tamas and van Rij, Ronald P. (2012) Everybody wins! Poland hosts thrilling competitions of viruses, RNAi and football teams. EMBO Reports, 13 (10). pp. 874-876. ISSN 1469-221X

Folkes, Leighton, Moxon, Simon, Woolfenden, Hugh C., Stocks, Matthew B., Szittya, Gyorgy, Dalmay, Tamas and Moulton, Vincent (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Research, 40 (13). ISSN 0305-1048

Goljanek-Whysall, Katarzyna, Pais, Helio, Rathjen, Tina, Sweetman, Dylan, Dalmay, Tamas and Munsterberg, Andrea (2012) Regulation of multiple target genes by miR-1 and miR-206 is pivotal for C2C12 myoblast differentiation. Journal of Cell Science, 125 (15). pp. 3590-3600. ISSN 0021-9533

Matthewman, Colette A., Kawashima, Cintia G., Húska, Dalibor, Csorba, Tibor, Dalmay, Tamas and Kopriva, Stanislav (2012) miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis. FEBS Letters, 586 (19). pp. 3242-3248. ISSN 1873-3468

Mohorianu, Irina, Lopez-Gomollon, Sara, Schwach, Frank, Dalmay, Tamas and Moulton, Vincent (2012) FiRePat-finding regulatory patterns between sRNAs and genes. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 2 (3). pp. 273-284.

Nicolas Molina, Francisco, Hall, Adam E., Csorba, Tibor, Turnbull, Carly and Dalmay, Tamas (2012) Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Letters, 586 (8). pp. 1226-1230. ISSN 1873-3468

Song, Jian Bo, Huang, Si Qi, Dalmay, Tamas and Yang, Zhi Min (2012) Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Plant and Cell Physiology, 53 (7). pp. 1283-1294. ISSN 0032-0781

Sorefan, Karim, Pais, Helio, Hall, Adam E, Kozomara, Ana, Griffiths-Jones, Sam, Moulton, Vincent and Dalmay, Tamas (2012) Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence, 3 (1).

Stocks, Matthew B., Moxon, Simon, Mapleson, Daniel, Woolfenden, Hugh C., Mohorianu, Irina, Folkes, Leighton, Schwach, Frank, Dalmay, Tamas and Moulton, Vincent (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics, 28 (15). pp. 2059-2061. ISSN 1367-4803

Swingler, Tracey E., Wheeler, Guy, Carmont, Virginia, Elliott, Hannah R., Barter, Matthew J., Abu-Elmagd, Muhammad, Donell, Simon T., Boot-Handford, Raymond P., Hajihosseini, Mohammad K., Munsterberg, Andrea, Dalmay, Tamas, Young, David A. and Clark, Ian M. (2012) The expression and function of microRNAs in chondrogenesis and osteoarthritis. Arthritis & Rheumatism, 64 (6). pp. 1909-1919. ISSN 1529-0131

Goljanek-Whysall, Katarzyna, Sweetman, Dylan, Abu-Elmagd, Muhammad, Chapnik, Elik, Dalmay, Tamas, Hornstein, Eran and Munsterberg, Andrea (2011) MicroRNA regulation of the paired-box transcription factor Pax3 confers robustness to developmental timing of myogenesis. Proceedings of the National Academy of Sciences, 108 (29). pp. 11936-11941. ISSN 0027-8424

Nicolas, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent and Dalmay, Tamas (2011) mRNA expression profiling reveals conserved and non-conserved miR-140 targets. RNA Biology, 8 (4). pp. 607-615. ISSN 1547-6286

Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S, Szittya, G, Sorefan, K, Moulton, V and Dalmay, T (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. The Plant Journal, 67 (2). pp. 232-246. ISSN 1365-313X

Kawashima, Cintia G., Matthewman, Colette A., Huang, Siqi, Lee, Bok-Rye, Yoshimoto, Naoko, Koprivova, Anna, Rubio-Somoza, Ignacio, Todesco, Marco, Rathjen, Tina, Saito, Kazuki, Takahashi, Hideki, Dalmay, Tamas and Kopriva, Stanislav (2011) Interplay of SLIM1 and miR395 in the regulation of sulfate assimilation in Arabidopsis. The Plant Journal, 66 (5). pp. 863-876. ISSN 1365-313X

Surridge, Alison K., Lopez-Gomollon, Sara, Moxon, Simon, Maroja, Luana S., Rathjen, Tina, Nadeau, Nicola J., Dalmay, Tamas and Jiggins, Chris D. (2011) Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics, 12. ISSN 1471-2164

Dalmay, T (2011) MicroRNAs in Development: Methods and Protocols. Methods in Molecular Biology . Humana Press. ISBN 1617790826

Nicolas, Francisco, Lopez-Gomollon, Sara, Lopez-Martinez, Alfonso and Dalmay, Tamas (2011) Silencing human cancer: Identification and uses of microRNAs. Recent Patents on Anti-Cancer Drug Discovery, 6 (1). pp. 94-105. ISSN 2212-3970

Pais, Helio, Moxon, Simon, Dalmay, Tamas and Moulton, Vincent (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: RNA Infrastructure and Networks. Advances in Experimental Medicine and Biology, 722 . Springer, pp. 239-254. ISBN 978-1-4939-4254-1

Lopez-Gomollon, Sara and Dalmay, Tamas (2010) Recent patents in RNA silencing in plants: Constructs, methods and applications in plant biotechnology. Recent Patents on DNA & Gene Sequences, 4 (3). pp. 155-166.

Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent, Burgyan, Jozsef and Dalmay, Tamas (2010) Structural and functional analysis of viral siRNAs. PLoS Pathogens, 6 (4). ISSN 1553-7374

Pais, Helio, Nicolas, Francisco Esteban, Soond, Surinder M., Swingler, Tracey E., Clark, Ian M., Chantry, Andrew, Moulton, Vincent and Dalmay, Tamas (2010) Analyzing mRNA expression identifies Smad3 as a microRNA-140 target regulated only at protein level. RNA, 16 (3). pp. 489-494. ISSN 1355-8382

Dalmay, Tamas (2010) Short RNAs in Tomato. Journal of Integrative Plant Biology, 52 (4). pp. 388-392. ISSN 1744-7909

Dalmay, Tamas (2010) Detection of small non-coding RNAs. In: Plant Developmental Biology. Molecular Biology, 655 . Humana Press, 265–274. ISBN 1064-3745

Ho, Thien, Wang, Liang, Huang, Linfeng, Li, Zhigang, Pallett, Denise W., Dalmay, Tamas, Ohshima, Kazusato, Walsh, John A. and Wang, Hui (2010) Nucleotide bias of DCL and AGO in plant anti-virus gene silencing. Protein & Cell, 1 (9). pp. 847-858. ISSN 1674-800X

Nicolas, Francisco Esteban, Moxon, Simon, de Haro, Juan P., Calo, Silvia, Grigoriev, Igor V., Torres-Martinez, Santiago, Moulton, Vincent, Ruiz-Vazquez, Rosa M. and Dalmay, Tamas (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Research, 38 (16). pp. 5535-5541. ISSN 0305-1048

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2010) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: Non-coding RNA networks. Landes Bioscience. ISBN 978-1-4614-0331-9

Pantaleo, Vitantonio, Saldarelli, Pasquale, Miozzi, Laura, Giampetruzzi, Annalisa, Gisel, Andreas, Moxon, Simon, Dalmay, Tamas, Bisztray, György and Burgyan, Jozsef (2010) Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology, 408 (1). pp. 49-56. ISSN 1096-0341

Pantaleo, Vitantonio, Szittya, György, Moxon, Simon, Miozzi, Laura, Moulton, Vincent, Dalmay, Tamas and Burgyan, Jozsef (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. The Plant Journal, 62 (6). pp. 960-976. ISSN 1365-313X

Trindade, Inês, Capitaeo, Cláudio, Dalmay, Tamas, Fevereiro, Manuel Pedro and dos Santos, Manuel Pedro (2010) miR398 and miR408 are up-regulated in response to water deficit in Medicago truncatula. Planta, 231 (3). pp. 705-716. ISSN 1432-2048

Navarro, Beatriz, Pantaleo, Vitantonio, Gisel, Andreas, Moxon, Simon, Dalmay, Tamas, Bisztray, György, Di Serio, Francesco and Burgyán, József (2009) Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS One, 4 (11). ISSN 1932-6203

Rathjen, Tina, Pais, Helio, Sweetman, Dylan, Moulton, Vincent, Munsterberg, Andrea and Dalmay, Tamas (2009) High throughput sequencing of microRNAs in chicken somites. FEBS Letters, 583 (9). pp. 1422-1426. ISSN 1873-3468

Kawashima, Cintia Goulart, Yoshimoto, Naoko, Maruyama-Nakashita, Akiko, Tsuchiya, Yumiko N., Saito, Kazuki, Takahashi, Hideki and Dalmay, Tamas (2009) Sulphur starvation induces the expression of microRNA-395 and one of its target genes but in different cell types. The Plant Journal, 57 (2). pp. 313-321. ISSN 1365-313X

Johnston, Ian A., Lee, Hung-Tai, Macqueen, Daniel J., Paranthaman, Karthikeyani, Kawashima, Cintia, Anwar, Attia, Kinghorn, James R. and Dalmay, Tamas (2009) Embryonic temperature affects muscle fibre recruitment in adult zebrafish: genomewide changes in gene and microRNA expression associated with the transition from hyperplastic to hypertrophic growth phenotypes. Journal of Experimental Biology, 212. pp. 1781-1793. ISSN 1477-9145

Lewis, Morag A., Quint, Elizabeth, Glazier, Anne M., Fuchs, Helmut, De Angelis, Martin Hrabé, Langford, Cordelia, van Dongen, Stijn, Abreu-Goodger, Cei, Piipari, Matias, Redshaw, Nick, Dalmay, Tamas, Moreno-Pelayo, Miguel Angel, Enright, Anton J. and Steel, Karen P. (2009) An ENU-induced mutation of a miRNA associated with progressive hearing loss. Nature Genetics, 41 (5). pp. 614-618. ISSN 1546-1718

Mencia, Ángeles, Modamio-Hoybjor, Silvia, Redshaw, Nick, Morin, Matías, Mayo-Merino, Fernando, Olavarrieta, Leticia, Aguirre, Luis A., del Castillo, Ignacio, Steel, Karen P., Dalmay, Tamas, Moreno, Felipe and Moreno-Pelayo, Miguel Ángel (2009) Mutations in the seed region of the human miR-96 are responsible for non-syndromic progressive hearing loss. Nature Genetics, 41 (5). pp. 609-613. ISSN 1546-1718

Nicolas, Francisco E., Lopez-Gomollon, Sara, Lopez-Martinez, Alfonso F. and Dalmay, Tamas (2009) RNA Silencing: Recent Developments on miRNAs. Recent Patents on DNA & Gene Sequences, 3 (2). pp. 77-87.

Redshaw, Nicholas, Wheeler, Guy, Hajihosseini, Mohammad K. and Dalmay, Tamas (2009) microRNA-449 is a putative regulator of choroid plexus development and function. Brain Research, 1250. pp. 20-26. ISSN 1872-6240

Schwach, Frank, Moxon, Simon, Moulton, Vincent and Dalmay, Tamas (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Briefings in Functional Genomics and Proteomics, 8 (6). pp. 472-481. ISSN 1473-9550

Sweetman, D, Goljanek, K, Rathjen, T, Dalmay, T and Munsterberg, A (2009) MicroRNAs in muscle development. Working Paper. UNSPECIFIED.

Szittya, György, Moxon, Simon, Santos, Dulce M., Jing, Runchan, Fevereiro, Manuel P. S., Moulton, Vincent and Dalmay, Tamas (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9. ISSN 1471-2164

Moxon, Simon, Jing, Runchan, Szittya, Gyorgy, Schwach, Frank, Rusholme Pilcher, Rachel L., Moulton, Vincent and Dalmay, Tamas (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Nicolas Molina, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent and Dalmay, Tamas (2008) Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140. RNA, 14. pp. 2513-2520. ISSN 1469-9001

Dalmay, T (2008) MicroRNAs and cancer. Journal of Internal Medicine, 263 (4). pp. 366-375. ISSN 1365-2796

Ho, Thien, Rusholme Pilcher, Rachel L., Edwards, Mary-Lou, Cooper, Ian, Dalmay, Tamas and Wang, Hui (2008) Evidence for GC preference by monocot Dicer-like proteins. Biochemical and Biophysical Research Communications, 368 (2). pp. 433-437. ISSN 1090-2104

Dalmay, T (2008) MicroRNAs. In: Encyclopedia of Cancer. Springer (Humana Press). ISBN 9783540368472

Dalmay, Tamas (2008) Identification of genes targeted by microRNAs. Biochemical Society Transactions, 36. pp. 1194-1196. ISSN 1470-8752

Ho, Thien X., Rusholme, Rachel, Dalmay, Tamas and Wang, Hui (2008) Cloning of short interfering RNAs from virus-infected plants. In: Plant Virology Protocols II. Springer, New York, pp. 229-241. ISBN 9781588298270

Moxon, Simon, Schwach, Frank, Dalmay, Tamas, MacLean, Dan, Studholme, David J. and Moulton, Vincent (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Sweetman, Dylan, Goljanek, Katarzyna, Rathjen, Tina, Oustanina, Svetlana, Braun, Thomas, Dalmay, Tamas and Munsterberg, Andrea (2008) Specific requirements of MRFs for the expression of muscle specific microRNAs, miR-1, miR-206 and miR-133. Developmental Biology, 321 (2). pp. 491-499. ISSN 1095-564X

Szittya, G, Dalmay, T and Burgyan, J (2008) Plant Antiviral Defense: Gene Silencing Pathway. In: Encyclopedia of Virology. Elsevier, pp. 141-149. ISBN 0123739357

Csorba, Tibor, Bovi, Aurelie, Dalmay, Tamas and Burgyan, József (2007) The p122 subunit of Tobacco mosaic virus replicase is a potent silencing suppressor and compromises both siRNA and miRNA mediated pathways. Journal of Virology, 81 (21). pp. 11768-11780. ISSN 0022-538X

Herbandez-Pinzon, Inmaculada, Yelina, Nataliya E., Schwach, Frank, Studholme, David J., Baulcombe, David and Dalmay, Tamas (2007) SDE5, the putative homologue of a human mRNA export factor, is required for transgene silencing and accumulation of trans-acting endogenous siRNA. The Plant Journal, 50 (1). pp. 140-148. ISSN 0960-7412

Ho, Thien, Wang, Hui, Pallett, Denise and Dalmay, Tamas (2007) Evidence for targeting common siRNA hotspots and GC preference by plant Dicer-like proteins. FEBS Letters, 581 (17). pp. 3267-3272. ISSN 0014-5793

Phillips, Jonathan R., Dalmay, Tamas and Bartels, Dorothea (2007) The role of small RNAs in abiotic stress. FEBS Letters, 581 (19). pp. 3592-3597. ISSN 0014-5793

Rusholme Pilcher, Rachel, Moxon, Simon, Pakseresht, Nima, Moulton, Vincent, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas (2007) Identification of novel short RNAs in tomato (Solanum lycopersicum). Planta, 226 (3). pp. 709-717. ISSN 0032-0935

Wheeler, Guy, Voloczi, Anna, Havelda, Zoltan and Dalmay, Tamas (2007) In situ detection of animal and plant miRNAs. DNA and Cell Biology, 26. pp. 251-255. ISSN 1557-7430

Ho, Thien, Pallett, Denise, Rusholme, Rachel, Dalmay, Tamas and Wang, Hui (2006) A simplified method for cloning of short interfering RNAs from Brassica juncea infected with Turnip mosaic potyvirus and Turnip crinkle carmovirus. Journal of Virological Methods, 136 (1-2). pp. 217-223. ISSN 1879-0984

Sweetman, Dylan, Rathjen, Tina, Jefferson, Matthew, Wheeler, Guy, Smith, Terence G, Wheeler, Grant N, Münsterberg, Andrea and Dalmay, Tamas (2006) FGF-4 signaling is involved in mir-206 expression in developing somites of chicken embryos. Developmental Dynamics, 235 (8). pp. 2185-2191. ISSN 1097-0177

Dalmay, Tamas (2006) Short RNAs in environmental adaptation. Proceedings of the Royal Society B: Biological Sciences, 273 (1594). pp. 1579-1585. ISSN 0962-8452

Dalmay, T. and Edwards, D.R. (2006) MicroRNAs and the hallmarks of cancer. Oncogene, 25. pp. 6170-6175. ISSN 1476-5594

Rathjen, Tina, Nichol, Clare, McConkey, Glenn and Dalmay, Tamas (2006) Analysis of short RNAs in the malaria parasite and its red blood cell host. FEBS Letters, 580 (22). pp. 5185-5188. ISSN 1873-3468

Tuddenham, Lee, Wheeler, Guy, Ntouniafousara, Sofia, Waters, Jasmine, Hajihosseini, Mohammad, Clark, Ian and Dalmay, Tamas (2006) The cartilage specific microRNA-140 targets histone deacetylase 4 in mouse cells. FEBS Letters, 580 (17). pp. 4214-4217. ISSN 1873-3468

Wheeler, Guy, Ntonuia-Fousara, Sofia, Granda, Begona, Rathjen, Tina and Dalmay, Tamas (2006) Identification of new central nervous system specific mouse microRNAs. FEBS Letters, 580 (9). pp. 2195-2200. ISSN 1873-3468

Dalmay, Tamas (2005) Virus Induced Gene Silencing. In: Plant Epigenetics. Blackwell Publishing Ltd, pp. 223-237.

Herr, A. J., Jensen, M. B., Dalmay, T. and Baulcombe, D. C. (2005) RNA polymerase IV directs silencing of endogenous DNA. Science, 308 (5718). pp. 118-120. ISSN 0036-8075

Szittya, György, Silhavy, Dániel, Dalmay, Tamás and Burgyán, József (2002) Size-dependent cell-to-cell movement of defective interfering RNAs of Cymbidium ringspot virus. Journal of General Virology, 83 (6). pp. 1505-1510. ISSN 1465-2099

Dalmay, Tamas, Horsefield, Rob, Braunstein, Thomas Hartig and Baulcombe, David C. (2001) SDE3 encodes an RNA helicase required for post-transcriptional gene silencing in Arabidopsis. The EMBO Journal, 20 (8). pp. 2069-2077. ISSN 0261-4189