Items where Author is "Van Oosterhout, Cock"

Article

Speak, Samuel A. ORCID: https://orcid.org/0000-0002-4207-7562, Birley, Thomas, Bortoluzzi, Chiara, Clark, Matthew D., Percival-Alwyn, Lawrence, Morales, Hernán E. and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2024) Genomics‐informed captive breeding can reduce inbreeding depression and the genetic load in zoo populations. Molecular Ecology Resources, 24 (7). ISSN 1755-098X

Urban, Lara, Santure, Anna W., Uddstrom, Lydia, Digby, Andrew, Vercoe, Deidre, Eason, Daryl, Crane, Jodie, Wylie, Matthew J., Davis, Tāne, LeLec, Marissa F., Guhlin, Joseph, Poulton, Simon, Slate, Jon, Alexander, Alana, Fuentes-Cross, Patricia, Dearden, Peter K., Gemmell, Neil J., Azeem, Farhan, Weyland, Marvin, Schwefel, Harald G. L., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Morales, Hernán E. and Kākāpō Recovery Team (2024) The genetic basis of the kākāpō structural color polymorphism suggests balancing selection by an extinct apex predator. PLoS Biology, 22 (9). ISSN 1544-9173

Gladieux, Pierre, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Fairhead, Sebastian, Jouet, Agathe, Ortiz, Diana, Ravel, Sebastien, Shrestha, Ram-Krishna, Frouin, Julien, He, Xiahong, Zhu, Youyong, Morel, Jean-Benoit, Huang, Huichuan, Kroj, Thomas and Jones, Jonathan D. G. (2024) Extensive immune receptor repertoire diversity in disease-resistant rice landraces. Current Biology, 34 (17). 3983-3995.e6. ISSN 0960-9822

Martin, Edward J., Speak, Samuel A. ORCID: https://orcid.org/0000-0002-4207-7562, Urban, Lara, Morales, Hernán E. and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2024) Sonification of genomic data to represent genetic load in zoo populations. Zoo Biology. ISSN 0733-3188

Morales, Hernán E., Groombridge, Jim J., Tollington, Simon, Henshaw, Sion, Tatayah, Vikash, Ruhomaun, Kevin, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Gilbert, M. Thomas P. (2024) The genome sequence of the Mauritius parakeet, Alexandrinus eques (formerly Psittacula eques) (A. Newton & E. Newton, 1876). Wellcome Open Research, 9. ISSN 2398-502X

Cavill, Emily L., Morales, Hernán E., Sun, Xin, Westbury, Michael V., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Accouche, Wilna, Zora, Anna, Schulze, Melissa J., Shah, Nirmal, Adam, Pierre André, Brooke, M. de L., Sweet, Paul, Gopalakrishnan, Shyam and Gilbert, M. Thomas P. (2024) When birds of a feather flock together: Severe genomic erosion and the implications for genetic rescue in an endangered island passerine. Evolutionary Applications, 17 (7). ISSN 1752-4563

Morales, Hernán E., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Whitford, Harriet, Tatayah, Vikash, Ruhomaun, Kevin, Groombridge, Jim J. and Gilbert, M. Thomas P. (2024) The genome sequence of the Pink Pigeon, Nesoenas mayeri (Prévost, 1843). Wellcome Open Research, 9. ISSN 2398-502X

Morales, Hernán E., Norris, Ken, Henshaw, Sion, Tatayah, Vikash, Ruhomaun, Kevin, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Groombridge, Jim J. and Gilbert, M. Thomas P. (2024) The genome sequence of the Mauritius kestrel, Falco punctatus (Temminck, 1821). Wellcome Open Research, 9. p. 312. ISSN 2398-502X

Al Hikmani, Hadi, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Birley, Thomas, Labisko, Jim, Jackson, Hazel A., Spalton, Andrew, Tollington, Simon and Groombridge, Jim J. (2024) Can genetic rescue help save Arabia's last big cat? Evolutionary Applications, 17 (5). ISSN 1752-4563

Weber, Anna, Lighten, Jackie, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Guibinga Mickala, Amour, Ntie, Stephan, Mickala, Patrick, Lehmann, David, Abernethy, Katharine and Anthony, Nicola (2024) What mandrills leave behind: Using fecal samples to characterize the major histocompatibility complex in a threatened primate. Conservation Genetics, 25 (2). pp. 533-549. ISSN 1566-0621

Pinto, Alessandro V., Hansson, Bengt, Patramanis, Ioannis, Morales, Hernán E. and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2024) The impact of habitat loss and population fragmentation on genomic erosion. Conservation Genetics, 25. pp. 49-57. ISSN 1566-0621

de Jong, Menno J., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Hoelzel, A. Rus and Janke, Axel (2024) Moderating the neutralist–selectionist debate: Exactly which propositions are we debating, and which arguments are valid? Biological Reviews, 99 (1). pp. 23-55. ISSN 1464-7931

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2024) AI-informed conservation genomics. Heredity, 132. pp. 1-4. ISSN 0018-067X

Femerling, Georgette, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Feng, Shaohong, Bristol, Rachel M., Zhang, Guojie, Groombridge, Jim, Gilbert, M. Thomas P. and Morales, Hernán E. (2023) Genetic load and adaptive potential of a recovered avian species that narrowly avoided extinction. Molecular Biology and Evolution, 40 (12). ISSN 0737-4038

Dussex, Nicolas, Morales, Hernán E., Grossen, Christine, Dalén, Love and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2023) Purging and accumulation of genetic load in conservation. Trends in Ecology and Evolution, 38 (10). pp. 961-969. ISSN 0169-5347

Urban, Lara, Perlas, Albert, Francino, Olga, Martí-Carreras, Joan, Muga, Brenda A., Mwangi, Jenniffer W., Boykin Okalebo, Laura, Stanton, Jo Ann L., Black, Amanda, Waipara, Nick, Fontsere, Claudia, Eccles, David, Urel, Harika, Reska, Tim, Morales, Hernán E., Palmada-Flores, Marc, Marques-Bonet, Tomas, Watsa, Mrinalini, Libke, Zane, Erkenswick, Gideon and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2023) Real-time genomics for One Health. Molecular Systems Biology, 19 (8). ISSN 1744-4292

Mathers, Thomas C., Wouters, Roland H. M., Mugford, Sam T., Biello, Roberto, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Hogenhout, Saskia A. (2023) Hybridisation has shaped a recent radiation of grass-feeding aphids. BMC Biology, 21. ISSN 1741-7007

Corsi, Giulia I., Tichkule, Swapnil, Sannella, Anna Rosa, Vatta, Paolo, Asnicar, Francesco, Segata, Nicola, Jex, Aaron R., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cacciò, Simone M. (2023) Recent genetic exchanges and admixture shape the genome and population structure of the zoonotic pathogen Cryptosporidium parvum. Molecular Ecology, 32 (10). pp. 2633-2645. ISSN 0962-1083

Rogério, Flávia, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Ciampi-Guillardi, Maisa, Correr, Fernando Henrique, Hosaka, Guilherme Kenichi, Cros-Arteil, Sandrine, Rodrigues Alves Margarido, Gabriel, Massola Júnior, Nelson S. and Gladieux, Pierre (2023) Means, motive and opportunity for biological invasions: Genetic introgression in a fungal pathogen. Molecular Ecology, 32 (10). pp. 2428-2442. ISSN 0962-1083

Sant’Anna, Fernando Hayashi, Finger Andreis, Tiago, Salvato, Richard Steiner, Muterle Varela, Ana Paula, Comerlato, Juliana, Gregianini, Tatiana Schäffer, Barcellos, Regina Bones, de Souza Godinho, Fernanda Marques, Resende, Paola Cristina, da Luz Wallau, Gabriel, y Castro, Thaís Regina, Casarin, Bruna Campestrini, de Almeida Vieira, Andressa, Schwarzbold, Alexandre Vargas, de Arruda Trindade, Priscila, Tumioto Giannini, Gabriela Luchiari, Freese, Luana, Bristot, Giovana, Brasil, Carolina Serpa, de Oliveira Rocha, Bruna, Martins, Paloma Bortolini, de Oliveira, Francine Hehn, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Wendland, Eliana (2023) Incipient parallel evolution of SARS-CoV-2 Deltacron variant in South Brazil. Vaccines, 11 (2). ISSN 2076-393X

Tichkule, Swapnil, Myung, Yoochan, Naung, Myo T., Ansell, Brendan R. E., Guy, Andrew J., Srivastava, Namrata, Mehra, Somya, Cacciò, Simone M., Mueller, Ivo, Barry, Alyssa E., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Pope, Bernard, Ascher, David B. and Jex, Aaron R. (2022) VIVID: A web application for variant interpretation and visualization in multi-dimensional analyses. Molecular Biology and Evolution, 39 (9). ISSN 0737-4038

Bertorelle, Giorgio, Raffini, Francesca, Bosse, Mirte, Bortoluzzi, Chiara, Iannucci, Alessio, Trucchi, Emiliano, Morales, Hernán E. and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2022) Genetic load: Genomic estimates and applications in non-model animals. Nature Reviews Genetics, 23 (8). 492–503. ISSN 1471-0056

Jackson, Hazel A., Percival-Alwyn, Lawrence, Ryan, Camilla, Albeshr, Mohammed F., Venturi, Luca, Morales, Hernán E., Mathers, Thomas C., Cocker, Jonathan, Speak, Samuel A. ORCID: https://orcid.org/0000-0002-4207-7562, Accinelli, Gonzalo G., Barker, Tom, Heavens, Darren, Willman, Faye, Dawson, Deborah, Ward, Lauren, Tatayah, Vikash, Zuël, Nicholas, Young, Richard, Concannon, Lianne, Whitford, Harriet, Clavijo, Bernardo, Bunbury, Nancy, Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158, Ruhomaun, Kevin, Grace, Molly K., Bruford, Michael W., Jones, Carl G., Tollington, Simon, Bell, Diana J., Groombridge, Jim J., Clark, Matt and Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2022) Genomic erosion in a demographically recovered bird species during conservation rescue. Conservation Biology, 36 (4). ISSN 0888-8892

Ye, Naihao, Han, Wentao, Toseland, Andrew, Wang, Yitao, Fan, Xiao, Xu, Dong, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Grigoriev, Igor V., Tagliabue, Alessandro, Zhang, Jian, Zhang, Yan, Ma, Jian, Qiu, Huan, Li, Youxun, Zhang, Xiaowen and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 and Sea of Change Consortium (2022) The role of zinc in the adaptive evolution of polar phytoplankton. Nature Ecology & Evolution, 6 (7). pp. 965-978. ISSN 2397-334X

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Marcu, Daniel ORCID: https://orcid.org/0000-0002-2151-5850 and Immler, Simone (2022) Accounting for the genetic load in assisted reproductive technology. Clinical and Translational Medicine, 12 (5). ISSN 2001-1326

Kamikawa, Ryoma, Mochizuki, Takako, Sakamoto, Mika, Tanizawa, Yasuhiro, Nakayama, Takuro, Onuma, Ryo, Cenci, Ugo, Moog, Daniel, Speak, Samuel ORCID: https://orcid.org/0000-0002-4207-7562, Sarkozi, Krisztina, Toseland, Andrew, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Oyama, Kaori, Kato, Misako, Kume, Keitaro, Kayama, Motoki, Azuma, Tomonori, Ishii, Ken-ichiro, Miyashita, Hideaki, Henrissat, Bernard, Lombard, Vincent, Win, Joe, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Kashiyama, Yuichiro, Mayama, Shigeki, Miyagishima, Shin-ya, Tanifuji, Goro, Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 and Nakamura, Yasukazu (2022) Genome evolution of a nonparasitic secondary heterotroph, the diatom Nitzschia putrida. Science Advances, 8 (17). ISSN 2375-2548

Tichkule, Swapnil, Cacciò, Simone M., Robinson, Guy, Chalmers, Rachel M., Mueller, Ivo, Emery-Corbin, Samantha J., Eibach, Daniel, Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Jex, Aaron R. (2022) Global population genomics of two subspecies of Cryptosporidium hominis during 500 years of evolution. Molecular Biology and Evolution, 39 (4). ISSN 0737-4038

Mao, Xuewei, Chen, Jianwei, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Zhang, Huan, Liu, Guangxing, Zhuang, Yunyun and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2022) Diversity, prevalence, and expression of cyanase genes (cynS) in planktonic marine microorganisms. The ISME Journal, 16 (2). 602–605. ISSN 1751-7362

Tatman, Ben, Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2021) Significance of differential allelic expression (DAE) in phenotypic plasticity and evolutionary potential of microbial eukaryotes. Quantitative Biology, 9 (4). pp. 400-410. ISSN 2095-4689

Phillips, Karl P., Cable, Joanne, Mohammed, Ryan S., Chmielewski, Sebastian, Przesmycka, Karolina J., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Radwan, Jacek (2021) Functional immunogenetic variation, rather than local adaptation, predicts ectoparasite infection intensity in a model fish species. Molecular Ecology, 30 (21). pp. 5588-5604. ISSN 0962-1083

Bulankova, Petra, Sekulić, Mirna, Jallet, Denis, Nef, Charlotte, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Delmont, Tom O., Vercauteren, Ilse, Osuna-Cruz, Cristina Maria, Vancaester, Emmelien, Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Sabbe, Koen, Daboussi, Fayza, Bowler, Chris, Vyverman, Wim, Vandepoele, Klaas and De Veylder, Lieven (2021) Mitotic recombination between homologous chromosomes drives genomic diversity in diatoms. Current Biology, 31 (15). 3221-3232.e9. ISSN 0960-9822

Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Stephenson, Jessica F., Weimer, Bart, Ly, Hinh, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158 (2021) COVID-19 adaptive evolution during the pandemic – Implications of new SARS-CoV-2 variants on public health policies. Virulence, 12 (1). pp. 2013-2016. ISSN 2150-5594

Hansson, Bengt, Morales, Hernán E. and Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2021) Comment on “Individual heterozygosity predicts translocation success in threatened desert tortoises”. Science, 372 (6546). ISSN 0036-8075

Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2021) Mitigating the threat of emerging infectious diseases; a coevolutionary perspective. Virulence, 12 (1). pp. 1288-1295. ISSN 2150-5594

Mathers, Thomas, Wouters, Roland H. M., Mugford, Sam T., Swarbreck, David, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Hogenhout, Saskia A. (2021) Chromosome-scale genome assemblies of aphids reveal extensively rearranged autosomes and long-term conservation of the X chromosome. Molecular Biology and Evolution, 38 (3). 856–875. ISSN 0737-4038

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2021) Conservation genetics: 50 years and counting. Conservation Letters, 14 (2). ISSN 1755-263X

Witek, Kamil, Lin, Xiao, Karki, Hari S., Jupe, Florian, Witek, Agnieszka I., Steuernagel, Burkhard, Stam, Remco, Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Fairhead, Sebastian, Heal, Robert, Cocker, Jonathan M., Bhanvadia, Shivani, Barrett, William, Wu, Chih-Hang, Adachi, Hiroaki, Song, Tianqiao, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Vleeshouwers, Vivianne G. A. A., Tomlinson, Laurence, Wulff, Brande B. H. and Jones, Jonathan D. G. (2021) A complex resistance locus in Solanum americanum recognizes a conserved Phytophthora effector. Nature Plants, 7 (2). pp. 198-208. ISSN 2055-026X

Smallbone, Willow, Ellison, Amy, Poulton, Simon, Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2021) Depletion of MHC supertype during domestication can compromise immunocompetence. Molecular Ecology, 30 (3). pp. 736-746. ISSN 0962-1083

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Ly, Hinh and Tyler, Kevin ORCID: https://orcid.org/0000-0002-0647-8158 (2021) COVID-19 evolution during the pandemic - Implications of new SARS-CoV-2 variants on disease control and public health policies. Virulence, 12 (1). pp. 507-508. ISSN 2150-5594

Mintram, Kate S., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Lighten, Jackie (2021) Genetic variation in resistance and high fecundity impede viral biocontrol of invasive fish. Journal of Applied Ecology, 58 (1). pp. 148-157. ISSN 0021-8901

Tichkule, Swapnil, Jex, Aaron R., Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Sannella, Anna Rosa, Krumkamp, Ralf, Aldrich, Cassandra, Maiga-Ascofare, Oumou, Dekker, Denise, Lamshöft, Maike, Mbwana, Joyce, Rakotozandrindrainy, Njari, Borrmann, Steffen, Thye, Thorsten, Schuldt, Kathrin, Winter, Doris, Kremsner, Peter G., Oppong, Kwabena, Manouana, Prince, Mbong, Mirabeau, Gesase, Samwel, Minja, Daniel T. R., Mueller, Ivo, Bahlo, Melanie, Nader, Johanna, May, Jürgen, Rakotozandrindrain, Raphael, Adegnika, Ayola Akim, Lusingu, John P. A., Amuasi, John, Eibach, Daniel and Caccio, Simone Mario (2021) Comparative genomics revealed adaptive admixture in Cryptosporidium hominis in Africa. Microbial Genomics, 7 (1). ISSN 2057-5858

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2020) Mutation load is the spectre of species conservation. Nature Ecology & Evolution, 4 (8). 1004–1006. ISSN 2397-334X

Chen, Yazhou, Singh, Archana, Kaithakottil, Gemy G, Mathers, Thomas C, Gravino, Matteo, Mugford, Sam T, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Swarbreck, David and Hogenhout, Saskia A (2020) An aphid RNA transcript migrates systemically within plants and is a virulence factor. Proceedings of the National Academy of Sciences of the United States of America, 117 (23). pp. 12763-12771. ISSN 1091-6490

Mohammed, Ryan S., King, Stanley D., Bentzen, Paul, Marcogliese, David, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Lighten, Jackie (2020) Parasite diversity and ecology in a model species, the guppy (Poecilia reticulata) in Trinidad. Royal Society Open Science, 7 (1). ISSN 2054-5703

Lee, Derek E., Fienieg, Elmar, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Muller, Zoe, Strauss, Megan, Carter, Kerryn D., Scheijen, Ciska P. J. and Deacon, Francois (2020) Giraffe translocation population viability analysis. Endangered Species Research, 41. pp. 245-252. ISSN 1863-5407

Mathers, Thomas C, Mugford, Sam T, Percival-Alwyn, Lawrence, Chen, Yazhou, Kaithakottil, Gemy, Swarbreck, David, Hogenhout, Saskia A and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2019) Sex-specific changes in the aphid DNA methylation landscape. Molecular Ecology, 28 (18). pp. 4228-4241. ISSN 0962-1083

Dunkley, Katie, Ellison, Amy R., Mohammed, Ryan S., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Whittey, Kathryn E., Perkins, Sarah E. and Cable, Jo (2019) Long-term cleaning patterns of the sharknose goby (Elacatinus evelynae). Coral Reefs, 38 (2). 321–330. ISSN 0722-4028

Nader, Johanna, Mathers, Thomas C., Ward, Ben J., Pachebat, Justin, Swain, Martin, Robinson, Guy, Chalmers, Rachel M., Hunter, Paul ORCID: https://orcid.org/0000-0002-5608-6144, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Tyler, Kevin ORCID: https://orcid.org/0000-0002-0647-8158 (2019) Evolutionary genomics of anthroponosis in Cryptosporidium. Nature Microbiology, 4 (5). 826–836.

Jouet, Agathe, Saunders, Diane G. O., McMullan, Mark, Ward, Ben, Furzer, Oliver, Jupe, Florian, Cevik, Volkan, Hein, Ingo, Thilliez, Gaetan J. A., Holub, Eric, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Jones, Jonathan D. G. (2019) Albugo candida race diversity, ploidy and host‐associated microbes revealed using DNA sequence capture on diseased plants in the field. New Phytologist, 221 (3). pp. 1529-1543. ISSN 0028-646X

Thilliez, Gaetan J. A., Armstrong, Miles R., Lim, Tze-Yin, Baker, Katie, Jouet, Agathe, Ward, Ben, Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Jones, Jonathan D. G., Huitema, Edgar, Birch, Paul R. J. and Hein, Ingo (2019) Pathogen enrichment sequencing (PenSeq) enables population genomic studies in oomycetes. New Phytologist, 221 (3). pp. 1634-1648. ISSN 0028-646X

Uren Webster, Tamsyn M., Rodriguez-Barreto, Deiene, Martin, Samuel A. M., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Orozco-terWengel, Pablo, Cable, Joanne, Hamilton, Alastair, Garcia De Leaniz, Carlos and Consuegra, Sofia (2018) Contrasting effects of acute and chronic stress on the transcriptome, epigenome, and immune response of Atlantic salmon. Epigenetics, 13 (12). pp. 1191-1207. ISSN 1559-2294

Thybert, David, Roller, Maša, Navarro, Fábio C. P., Fiddes, Ian, Streeter, Ian, Feig, Christine, Martin-Galvez, David, Kolmogorov, Mikhail, Janoušek, Václav, Akanni, Wasiu, Aken, Bronwen, Aldridge, Sarah, Chakrapani, Varshith, Chow, William, Clarke, Laura, Cummins, Carla, Doran, Anthony, Dunn, Matthew, Goodstadt, Leo, Howe, Kerstin, Howell, Matthew, Josselin, Ambre-Aurore, Karn, Robert C., Laukaitis, Christina M., Jingtao, Lilue, Martin, Fergal, Muffato, Matthieu, Nachtweide, Stefanie, Quail, Michael A., Sisu, Cristina, Stanke, Mario, Stefflova, Klara, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Veyrunes, Frederic, Ward, Ben, Yang, Fengtang, Yazdanifar, Golbahar, Zadissa, Amonida, Adams, David J., Brazma, Alvis, Gerstein, Mark, Paten, Benedict, Pham, Son, Keane, Thomas M., Odom, Duncan T. and Flicek, Paul (2018) Repeat associated mechanisms of genome evolution and function revealed by the Mus caroli and Mus pahari genomes. Genome Research, 28 (4). pp. 448-459. ISSN 1088-9051

Phillips, Karl P., Cable, Joanne, Mohammed, Ryan S., Herdegen-Radwan, Magdalena, Raubic, Jarosław, Przesmycka, Karolina J., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Radwan, Jacek (2018) Immunogenetic novelty confers a selective advantage in host–pathogen coevolution. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 115 (7). pp. 1552-1557. ISSN 0027-8424

Lighten, Jackie, Papadopulos, Alexander S. T., Mohammed, Ryan S., Ward, Ben J., Paterson, Ian, Baillie, Lyndsey, Bradbury, Ian R., Hendry, Andrew P., Bentzen, Paul and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2017) Evolutionary genetics of immunological supertypes reveals two faces of the Red Queen. Nature Communications, 8. ISSN 2041-1723

Paajanen, Pirita, Strauss, Jan, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, McMullan, Mark, Clark, Matthew D. and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2017) Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrus. Scientific Data, 4. ISSN 2052-4463

Svensson, Ola, Gräns, Johanna, Celander, Malin C., Havenhand, Jonathan, Leder, Erica H., Lindström, Kai, Schöld, Sofie, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Kvarnemo, Charlotta (2017) Immigrant reproductive dysfunction facilitates ecological speciation. Evolution, 71 (10). 2510–2521. ISSN 0014-3820

Gilroy, Danielle L., Phillips, Karl P., Richardson, David S. ORCID: https://orcid.org/0000-0001-7226-9074 and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2017) Toll-like receptor variation in the bottlenecked population of the Seychelles warbler: Computer simulations see the ‘ghost of selection past’ and quantify the ‘drift debt’. Journal of Evolutionary Biology, 30 (7). 1276–1287. ISSN 1010-061X

Santonastaso, Trent, Lighten, Jackie, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Jones, Kenneth L., Foufopoulos, Johannes and Anthony, Nicola M. (2017) The effects of historical fragmentation on major histocompatibility complex class II β and microsatellite variation in the Aegean island reptile, Podarcis erhardii. Ecology and Evolution, 7 (13). 4568–4581. ISSN 2045-7758

Gilroy, D. L., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Komdeur, J. and Richardson, D. S. ORCID: https://orcid.org/0000-0001-7226-9074 (2017) Toll-like receptor variation in the bottlenecked population of the endangered Seychelles warbler. Animal Conservation, 20 (3). 235–250. ISSN 1367-9430

Bentkowski, Piotr, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Ashby, Ben and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2017) The effect of extrinsic mortality on genome size evolution in prokaryotes. The ISME Journal, 11 (4). 1011–1018. ISSN 1751-7362

Lighten, Jackie and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2017) Biocontrol of common carp in Australia poses risks to biosecurity. Nature Ecology & Evolution, 1. ISSN 2397-334X

Svensson, Ola, Woodhouse, Katie, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Smith, Alan, Turner, George F. and Seehausen, Ole (2017) The genetics of mate preferences in hybrids between two young and sympatric Lake Victoria cichlid species. Proceedings of the Royal Society B: Biological Sciences, 284 (1849). pp. 233-243. ISSN 0962-8452

Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Swarbreck, David and Hogenhout, Saskia A. (2017) Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 18. ISSN 1474-760X

Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Otillar, Robert P., Strauss, Jan, McMullan, Mark, Paajanen, Pirita, Schmutz, Jeremy, Salamov, Asaf, Sanges, Remo, Toseland, Andrew, Ward, Ben J., Allen, Andrew E., Dupont, Christopher L., Frickenhaus, Stephan, Maumus, Florian, Veluchamy, Alaguraj, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Barry, Kerrie W., Falciatore, Angela, Ferrante, Maria I., Fortunato, Antonio E., Glöckner, Gernot, Gruber, Ansgar, Hipkin, Rachel, Janech, Michael G., Kroth, Peter G., Leese, Florian, Lindquist, Erika A., Lyon, Barbara R., Martin, Joel, Mayer, Christoph, Parker, Micaela, Quesneville, Hadi, Raymond, James A., Uhlig, Christiane, Valas, Ruben E., Valentin, Klaus U., Worden, Alexandra Z., Armbrust, E. Virginia, Clark, Matthew D., Bowler, Chris, Green, Beverley R., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Grigoriev, Igor V. (2017) Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus. Nature, 541. 536–540. ISSN 0028-0836

Li, Jinhong, Cocker, Jonathan M., Wright, Jonathan, Webster, Margaret A., McMullan, Mark, Dyer, Sarah, Swarbreck, David, Caccamo, Mario, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Gilmartin, Philip M. (2016) Genetic architecture and evolution of the S locus supergene in Primula vulgaris. Nature Plants, 2. ISSN 2055-026X

Lighten, Jackie, Incarnato, Danny, Ward, Ben J., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Bradbury, Ian, Hanson, Mark and Bentzen, Paul (2016) Adaptive phenotypic response to climate enabled by epigenetics in a K-strategy species, the fish Leucoraja ocellata (Rajidae). Royal Society Open Science, 3.

Smallbone, Willow, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Jo (2016) The effects of inbreeding on disease susceptibility:Gyrodactylus turnbulli infection of guppies, Poecilia reticulata. Experimental Parasitology, 167. pp. 32-37. ISSN 0014-4894

Aniceto, Ana S., Carroll, Jolynn, Tetley, Michael J. and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2016) Position, swimming direction and group size of fin whales (Balaenoptera physalus) in the presence of a fast-ferry in the Bay of Biscay. Oceanologia, 58 (3). 235–240. ISSN 0078-3234

Mohammed, Ryan S., Reynolds, Michael, James, Joanna, Williams, Chris, Mohammed, Azad, Ramsubhag, Adesh, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Jo (2016) Getting into hot water:sick guppies frequent warmer thermal conditions. Oecologia, 181 (3). 911–917. ISSN 0029-8549

Bolton, N. M., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Collar, N. J. and Bell, D. J. (2016) Population constraints on the Grenada Dove Leptotila wellsi: preliminary findings and proposals from south-west Grenada. Bird Conservation International, 26 (02). pp. 205-213. ISSN 0959-2709

Gilroy, Danielle, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Komdeur, Jan and Richardson, David S. ORCID: https://orcid.org/0000-0001-7226-9074 (2016) Avian β-defensin variation in bottlenecked populations: the Seychelles warbler and other congeners. Conservation Genetics, 17 (3). pp. 661-674. ISSN 1566-0621

Stevenson, Jessica F., Kinsella, Cormac, Cable, Joanne and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2016) A further cost for the sicker sex? Evidence for male-biased parasite-induced vulnerability to predation. Ecology and Evolution, 6 (8). 2506–2515. ISSN 2045-7758

Svensson, Ola, Smith, Alan, Garcia-Alonso, Javier and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2016) Hybridisation generates a hopeful monster: a hermaphroditic selfing cichlid. Royal Society Open Science, 3.

Ward, Ben J. and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2016) HYBRIDCHECK: software for the rapid detection, visualization and dating of recombinant regions in genome sequence data. Molecular Ecology Resources, 16 (2). 534–539. ISSN 1755-098X

Stephenson, J. F., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X and Cable, J. (2015) Pace of life, predators and parasites: predator-induced life-history evolution in Trinidadian guppies predicts decrease in parasite tolerance. Biology Letters, 11 (11). ISSN 1744-9561

Jouet, Agathe, McMullan, Mark and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2015) The effects of recombination, mutation and selection on the evolution of the Rp1resistance genes in grasses. Molecular Ecology, 24 (12). pp. 3077-3092. ISSN 0962-1083

McMullan, Mark, Gardiner, Anastasia, Bailey, Kate, Kemen, Eric, Ward, Ben J., Cevik, Volkan, Robert-Seilaniantz, Alexandre, Schultz-Larsen, Torsten, Balmuth, Alexi, Holub, Eric, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Jones, Jonathan D. G. (2015) Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite. eLife, 4. ISSN 2050-084X

Stephenson, Jessica Frances, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Mohammed, Ryan Simon and Cable, Joanne (2015) Parasites of Trinidadian guppies: evidence for sex- and age-specific trait-mediated indirect effects of predators. Ecology, 96 (2). pp. 489-498. ISSN 0012-9658

Xavier, Raquel, Faria, Patricia J., Paladini, Giuseppe, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Johnson, Mireille and Cable, Jo (2015) Evidence for cryptic speciation in directly transmitted Gyrodactylid parasites of Trinidadian guppies. PLoS One, 10 (1). ISSN 1932-6203

Nichols, Paul, Genner, Martin J., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Smith, Alan, Parsons, Paul, Sungani, Harold, Swanstrom, Jennifer and Joyce, Domino A. (2015) Secondary contact seeds morphological novelty in cichlid fishes. Proceedings of the Royal Society B: Biological Sciences, 282 (1798). ISSN 0962-8452

Simon, Andrea, Gozlan, Rodolphe E., Britton, J. Robert, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Hänfling, Bernd (2015) Human induced stepping-stone colonisation of an admixed founder population: the spread of topmouth gudgeon (Pseudorasbora parva) in Europe. Aquatic Sciences, 77 (1). pp. 17-25. ISSN 1015-1621

Bentkowski, Piotr, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2015) A model of genome size evolution for prokaryotes in stable and fluctuating environments. Genome Biology and Evolution, 7 (8). 2344–2351. ISSN 1759-6653

Tezuka, A, Kasagi, S, Van Oosterhout, C ORCID: https://orcid.org/0000-0002-5653-738X, Mcmullan, M, Iwasaki, W M, Kasai, D, Yamamichi, M, Innan, H, Kawamura, S and Kawata, M (2014) Divergent selection for opsin gene variation in guppy (Poecilia reticulata) populations of Trinidad and Tobago. Heredity, 113. pp. 381-389. ISSN 0018-067X

Li, Peijin, Filiault, Daniele, Box, Mathew S., Kerdaffrec, Envel, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Wilczek, Amity M., Schmitt, Johanna, McMullan, Mark, Bergelson, Joy, Nordborg, Magnus and Dean, Caroline (2014) Multiple FLC haplotypes defined by independent cis-regulatory variation underpin life history diversity in Arabidopsis thaliana. Genes & Development, 28 (15). pp. 1635-1640. ISSN 0890-9369

Lighten, Jackie, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Bentzen, Paul (2014) Critical review of NGS analyses for de novo genotyping multigene families. Molecular Ecology, 23 (16). pp. 3957-3972. ISSN 0962-1083

Lighten, Jackie, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Paterson, Ian G., McMullan, Mark and Bentzen, Paul (2014) Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata). Molecular Ecology Resources, 14 (4). pp. 753-767. ISSN 1755-098X

Kerby, Tina K., Cheung, William W. L., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Engelhard, Georg H. (2013) Entering uncharted waters: Long-term dynamics of two data limited fish species, turbot and brill, in the North Sea. Journal of Sea Research, 84. pp. 87-95. ISSN 1385-1101

Hoban, Sean M., Mezzavilla, Massimo, Gaggiotti, Oscar E., Benazzo, Andrea, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Bertorelle, Giorgio (2013) High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: a simulation study. BMC Bioinformatics, 14. ISSN 1471-2105

Cable, Joanne, Archard, Gabrielle A., Mohammed, Ryan S., McMullan, Mark, Stephenson, Jessica F., Hansen, Haakon and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2013) Can parasites use predators to spread between primary hosts? Parasitology, 140 (09). pp. 1138-1143. ISSN 0031-1820

Kerby, Tina K., Cheung, William W. L., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Engelhard, Georg H. (2013) Wondering about wandering whiting: Distribution of North Sea whiting between the 1920s and 2000s. Fisheries Research, 145. pp. 54-65. ISSN 0165-7836

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Mohammed, Ryan S., Xavier, Raquel, Stephenson, Jessica F., Archard, Gabrielle A., Hockley, Fran A., Perkins, Sarah E. and Cable, Joanne (2013) Invasive freshwater snails provide resource for native marine hermit crabs. Aquatic Invasions, 8 (2). pp. 185-191. ISSN 1818-5487

van Wijk, S. J., Taylor, M. I. ORCID: https://orcid.org/0000-0002-3858-0712, Creer, S., Dreyer, C., Rodrigues, F. M., Ramnarine, I. W., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X and Carvalho, G. R. (2013) Experimental harvesting of fish populations drives genetically based shifts in body size and maturation. Frontiers in Ecology & the Environment, 11 (4). pp. 181-187. ISSN 1540-9295

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2013) Maintenance of major histocompatibility supertype variation in selfing vertebrate is no evidence for overdominant selection. Proceedings of the Royal Society B: Biological Sciences, 280 (1754). ISSN 0962-8452

Tesson, Sylvie V. M., Legrand, Christophe, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Montresor, Marina, Kooistra, Wiebe H. C. F. and Procaccini, Gabriele (2013) Mendelian inheritance pattern and high mutation rates of microsatellite alleles in the diatom Pseudo-nitzchia multistriata. Protist, 164 (1). pp. 89-100. ISSN 1434-4610

Richards, E. L., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X and Cable, J. (2012) Interactions between male guppies facilitates the transmission of the mongenean ectoparasite Gyrodactylus turnbulli. Experimental Parasitology, 132 (4). pp. 483-486. ISSN 1090-2449

Schelkle, Bettina, Mohammed, Ryan S., Coogan, Michael P., McMullan, Mark, Gillingham, Emma L., Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2012) Parasites pitched against nature: Pitch Lake water protects guppies (Poecilia reticulata) from microbial and gyrodactylid infections. Parasitology, 139 (13). pp. 1772-1779. ISSN 1469-8161

Willing, Eva-Maria, Dreyer, Christine and Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2012) Estimates of genetic differentiation measured by FST do not necessarily require large sample sizes when using many SNP markers. PLoS One, 7 (8). ISSN 1932-6203

McMullan, Mark and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2012) Inference of selection based on temporal genetic differentiation in the study of highly polymorphic multigene families. PLoS One, 7 (8). ISSN 1932-6203

Sala-Bozano, Maria, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Mariani, Stefano (2012) Impact of a mouth parasite in a marine fish differs between geographical areas. Biological Journal of the Linnean Society, 105 (4). pp. 842-852. ISSN 0024-4066

Llaurens, V., McMullan, M. and van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X (2012) Cryptic MHC polymorphism revealed but not explained by selection on the class IIB peptide-binding region. Molecular Biology and Evolution, 29 (6). pp. 1631-1644. ISSN 1537-1719

Croft, Darren P., Edenbrow, Mathew, Darden, Safi K., Ramnarine, Indar W., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2011) Effect of gyrodactylid ectoparasites on host behaviour and social network structure in guppies Poecilia reticulata. Behavioral Ecology and Sociobiology, 65 (12). 2219–2227. ISSN 0340-5443

Spurgin, Lewis G., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Illera, Juan Carlos, Bridgett, Stephen, Gharbi, Karim, Emerson, Brent C. and Richardson, David S. ORCID: https://orcid.org/0000-0001-7226-9074 (2011) Gene conversion rapidly generates major histocompatibility complex diversity in recently founded bird populations. Molecular Ecology, 20 (24). pp. 5213-5225. ISSN 1365-294X

Johnson, Mirelle B., Lafferty, Kevin D., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2011) Parasite transmission in social interacting hosts: Monogenean epidemics in guppies. PLoS One, 6 (8). ISSN 1932-6203

Simon, Andrea, Britton, Robert, Gozlan, Rodolphe, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Volckaert, Filip A. M. and Hänfling, Bernd (2011) Invasive cyprinid fish in Europe originate from the single introduction of an admixed source population followed by a complex pattern of spread. PLoS One, 6 (6). ISSN 1932-6203

Richards, E. Loys, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2010) Sex-specific differences in shoaling affect parasite transmission in guppies. PLoS One, 5 (10). ISSN 1932-6203

Cummings, S. M., McMullan, M., Joyce, D. A. and van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X (2010) Solutions for PCR, cloning and sequencing errors in population genetic analysis. Conservation Genetics, 11 (3). pp. 1095-1097.

Faria, Patrícia J., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2010) Optimal release strategies for captive-bred animals in reintroduction programs: experimental infections using the guppy as a model organism. Biological Conservation, 143 (1). pp. 35-41.

Willing, Eva-Maria, Bentzen, Paul, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Hoffman, Margarete, Cable, Joanne, Breden, Felix, Weigel, Detlef and Dreyer, Christine (2010) Genome-wide single nucleotide polymorphisms reveal population history and adaptive divergence in wild guppies. Molecular Ecology, 19 (5). pp. 968-984. ISSN 1365-294X

Zidana, Hastings, Turner, George F., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Hänfling, Bernd (2009) Elevated mtDNA diversity in introducted populations of Cynotilapia afra (Gunther, 1984) in Lake Malawi National Park is evidence for multiple source populations and hybridisation. Molecular Ecology, 18 (21). pp. 4380-4389. ISSN 1365-294X

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X (2009) Transposons in the MHC: The Yin and Yang of the vertebrate immune system. Heredity (103). pp. 190-191. ISSN 1365-2540

Blais, Jonatan, Plenderleith, Martin, Rico, Ciro, Taylor, Martin I. ORCID: https://orcid.org/0000-0002-3858-0712, Seehausen, Ole, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Turner, George F. (2009) Assortative mating among Lake Malawi cichlid fish populations is not simply predictable from male nuptial colour. BMC Evolutionary Biology, 9. ISSN 1471-2148

Barson, N. J., Cable, J. and van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X (2009) Population genetic analysis of microsatellite variation of guppies (Poecilia reticulata) in Trinidad and Tobago: evidence for a dynamic source-sink metapopulation structure, founder events and population bottlenecks. Journal of Evolutionary Biology (22). pp. 485-497. ISSN 1420-9101

King, Tracey Ann, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Cable, Joanne (2009) Experimental infections with the tropical monogenean, Gyrodactylus bullatarudis: Potential invader or experimental fluke? Parasitology International, 58 (3). pp. 249-254. ISSN 1873-0329

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2009) A new theory of MHC evolution: beyond selection on the immune genes. Proceedings of the Royal Society B, 276 (1657). pp. 657-665. ISSN 1471-2954

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2009) Trans-species polymorphism, HLA-disease associations and the evolution of the MHC. Communicative and Integrative Biology, 2 (5). pp. 408-410. ISSN 1942-0889

Amin, Omar M., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Blais, J. and Cable, J. (2008) On the ecology and host relationships of Acanthogyrus (Acanthosentis) tilapiae (Acanthocephala:Quadrigyridae) from Cichlids in Lake Malawi. Comparative Parasitology, 75 (2). pp. 278-282.

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Potter, R., Wright, H. and Cable, J. (2008) Gyro-scope: An individual-based computer model to forecast gyrodactylid infections on fish hosts. International Journal for Parasitology, 38 (5). pp. 541-548. ISSN 1879-0135

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Archard, Gabrielle A., Partridge, Julian C. and Cuthill, Innes C. (2008) Female guppies (Poecilia reticulata) show no preference for conspecific chemosensory cues in the field or an artifical flow chamber. Behaviour, 145 (10). pp. 1329-1346. ISSN 1568-539X

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Smith, Alan M., Hänfling, Bernd, Ramnarine, Indar W., Mohammed, Ryan S. and Cable, Joanne (2007) The guppy as a conservation model: implications of parasitism and inbreeding on reintroduction success. Conservation Biology, 21 (6). pp. 1573-1583. ISSN 1523-1739

Cable, J. and van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X (2007) The impact of parasites on the life history evolution of guppies (Poecilia reticulata): the effects of host size on parasitic virulence. International Journal for Parasitology, 37 (13). pp. 1449-1458. ISSN 1879-0135

Blais, Jonatan, Rico, Ciro, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Cable, Joanne, Turner, George F. and Bernatchez, Louis (2007) MHC adaptive divergence between closely related and sympatric African cichlids. PLoS One, 2 (8). ISSN 1932-6203

Cable, J. and van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X (2007) The role of innate and acquired resistance in two natural populations of guppies (Poecilia reticulata) infected with the ectoparasite Gyrodactylus turnbulli. Biological Journal of the Linnean Society, 90 (4). pp. 647-655. ISSN 1095-8312

Herborg, Leif-Matthias, Weetman, David, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Hanfling, Bernd (2007) Genetic population structure and contemporary dispersal patterns of a recent European invader, the Chinese mitten crab, Eriocheir sinensis. Molecular Ecology, 16 (2). pp. 231-242. ISSN 1365-294X

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Mohammed, R. S., Hansen, H., Archard, G. A., McMullan, M., Weese, D. J. and Cable, J. (2007) Selection by parasites in spate conditions in wild Trinidadian guppies (Poecilia reticulata). International Journal for Parasitology, 37 (7). pp. 805-812. ISSN 1879-0135

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Weetman, D. and Hutchinson, W. F. (2006) Estimation and adjustment of microsatellite null alleles in nonequilibrium populations. Molecular Ecology, 6 (1). pp. 255-256. ISSN 1365-294X

Bray, Richard A., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Blais, Jonatan and Cable, Joanne (2006) Astiotrema turneri n. sp (Digenea: Plagiorchiide) from cichlid fishes (Cichlidae: Perciformes) of Lake Malawi, south-eastern Africa. Zootaxa (1319). pp. 43-58. ISSN 1175-5334

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Joyce, D. A. and Cummings, S. M. (2006) Evolution of MHC class IIB in the genome of wild and ornamental guppies, Poecilia reticulata. Heredity, 97. pp. 111-118. ISSN 1365-2540

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Joyce, Domino A., Cummings, Stephen M., Blais, Jonatan, Barson, Nicola J., Ramnarine, Indar W., Mohammed, Ryan S., Persad, Nadia and Cable, Joanne (2006) Balancing selection, random genetic drift and genetic variation at the Major Histocompatability Complex (MHC) in two wild populations of guppies (Poecilia reticulata). Evolution, 60 (12). pp. 2562-2574. ISSN 1558-5646

Cable, J., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Barson, N. and Harris, P. D. (2005) Gyrodactylus pictae n. sp (Monogenea: Gyrodactylidae) from the Trinidadian swamp guppy Poecilia picta Regan, with a discussion on species of Gyrodactylus von Nordmann, 1832 and their poeciliid hosts. Systematic Parasitology, 60 (3). pp. 159-164.

Case, R. A. J., Hutchinson, W. F., Hauser, L., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X and Carvalho, G. R. (2005) Macro- and micro-geographic variation in pantophysin (PanI) allele frequencies in NE Atlantic cod Gadus morhua. Marine Ecology Progress Series, 301. pp. 267-278. ISSN 0171-8630

Plenderleith, Martin, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Robinson, Rosanna L. and Turner, George F. (2005) Female preference for conspecific males based on olfactory cues in a Lake Malawi cichlid fish. Biology Letters, 1 (4). pp. 411-414. ISSN 1744-957X

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Hutchinson, William F., Wills, Derek P. M. and Shipley, Peter (2004) Micro-Checker: Software for identifying and correcting genotyping errors in microsatellite data. Molecular Ecology, 4 (3). pp. 535-538. ISSN 1365-294X

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, van Heuven, M. K. and Brakefield, P. M. (2004) On the neutrality of molecular genetic markers: Pedigree analysis of genetic variation in fragmented populations. Molecular Ecology, 13 (5). pp. 1025-1034. ISSN 1365-294X

Hutchinson, William F., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Rogers, Stuart I. and Carvalho, Gary R. (2003) Temporal analysis of archived samples indicates marked genetic changes in declining North Sea cod (Gadus morhua). Proceedings of the Royal Society B: Biological Sciences, 270 (1529). pp. 2125-2132. ISSN 0962-8452

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Harris, P. D. and Cable, J. (2003) Marked variation in parasite resistance between two wild populations of the Trinidadian guppy, Poecilia reticulata (Pisces: Poeciliidae). Biological Journal of the Linnean Society, 79 (4). pp. 645-651. ISSN 1095-8312

van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Trigg, R. E., Carvalho, G. R., Hauser, L., Magurran, A. E. and Shaw, P. W. (2003) Inbreeding depression and genetic load in Poecilia reticulata: how the guppy lost its spots. Journal of Evolutionary Biology, 16 (2). pp. 273-281. ISSN 1420-9101

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Smit, Gijs, van Heuven, Marianne K. and Brakefield, Paul M. (2000) Pedigree analysis on small laboratory population of the butterfly Bicyclus anynana: The effects of selection on inbreeding and fitness. Conservation Genetics, 1 (4). pp. 321-328.

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Zijlstra, Wilte G., van Heuven, Marianne K. and Brakefield, Paul M. (2000) Inbreeding depression and genetic load in laboratory metapopulations of the butterfly Bicyclus anynana. Evolution, 54 (1). pp. 218-225. ISSN 1558-5646

Book Section

Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Hodgkinson, Kat, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Duncan, Anthony, Oosterhout, Cock van ORCID: https://orcid.org/0000-0002-5653-738X and Pichler, Monica (2022) Structure and Evolution of Diatom Nuclear Genes and Genomes. In: The Molecular Life of Diatoms. Springer, pp. 111-145. ISBN 9783030924980

McMullan, Mark and van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X (2011) Evolutionary genetics and molecular ecology of the Major Histocompatibility Complex (MHC) genes of poeciliids. In: Ecology and Evolution of Poeciliid Fishes. University of Chicago Press, Chicago. ISBN 9780226222745

Carvalho, G. R., van Oosterhout, C. ORCID: https://orcid.org/0000-0002-5653-738X, Hauser, L. and Magurran, A. E. (2002) Measuring genetic variation in wild populations: from molecular markers to adaptive traits. In: Genes in the Environment. Blackwell Science, Oxford, pp. 91-111.