Structure and Evolution of Diatom Nuclear Genes and Genomes

Mock, Thomas ORCID:, Hodgkinson, Kat, Wu, Taoyang ORCID:, Moulton, Vincent ORCID:, Duncan, Anthony, Oosterhout, Cock van ORCID: and Pichler, Monica ORCID: (2022) Structure and Evolution of Diatom Nuclear Genes and Genomes. In: The Molecular Life of Diatoms. Springer, pp. 111-145. ISBN 9783030924980

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Diatoms are one of the most successful eukaryotes. There are over 100,000 diatom species contributing nearly half of total algal abundance in the oceans. Diatoms have conquered almost all aquatic environments, with high abundance especially in coastal and polar oceans and inland waters. The first diatom genomes provided important insights into their genetic, metabolic, and morphological diversity, which is unmatched by any other algal class. However, the recent application of long-read sequencing in addition to population genomics and culture-independent approaches enables a step-change in our understanding of diatom genomes. This chapter synthesizes what we have learned about the structure and evolution of diatom nuclear genes and genomes since the genome of Thalassiosira pseudonana became available in 2004. We highlight some of the key findings and discuss mechanisms and drivers of diatom genome evolution and adaptation underpinning the success of the entire class. Considering that most of their genomic diversity is still unknown, large-scale genome projects and culture-independent methods such as metagenome-assembled and single-cell-amplified genomes hold great promise to reveal more of their inter- and intraspecific genomic diversity in an environmental context. Data from these studies will pave the way for novel insights into their genetic versatility, which will enable us to identify the key evolutionary innovations in diatoms, and their adaptive evolution to a wide variety of environments, including to some of the most extreme aquatic environments on Earth such as intertidal zones and polar oceans. These insights are not only critical for advancing diatom-based biotechnology and synthetic biology, but will also improve our knowledge about how the various diatom lineages perform their important roles as key players for capturing CO2 and as the foundation of diverse aquatic food webs, thus providing significant ecosystem services and maintaining the continued habitability on Earth.

Item Type: Book Section
Additional Information: Publisher Copyright: © Springer Nature Switzerland AG 2022.
Uncontrolled Keywords: immunology and microbiology(all),agricultural and biological sciences(all),sdg 15 - life on land ,/dk/atira/pure/subjectarea/asjc/2400
Faculty \ School: Faculty of Science > School of Environmental Sciences
University of East Anglia Research Groups/Centres > Theme - ClimateUEA
Faculty of Science > School of Computing Sciences
UEA Research Groups: Faculty of Science > Research Centres > Centre for Ecology, Evolution and Conservation
Faculty of Science > Research Groups > Centre for Ocean and Atmospheric Sciences
Faculty of Science > Research Groups > Environmental Biology
Faculty of Science > Research Groups > Computational Biology
Faculty of Science > Research Groups > Norwich Epidemiology Centre
Faculty of Medicine and Health Sciences > Research Groups > Norwich Epidemiology Centre
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Depositing User: LivePure Connector
Date Deposited: 11 Mar 2024 09:30
Last Modified: 11 Mar 2024 09:30
DOI: 10.1007/978-3-030-92499-7_5

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