Items where Author is "Clarke, Tom"

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Number of items: 65.

Jiang, Xiuyun, Van Wonderen, Jessica, Butt, Julea, Edwards, Marcus J., Clarke, Tom and Blumberger, Jochen (2020) Which Multi-Heme Protein Complex Transfers Electrons More Efficiently? Comparing MtrCAB from Shewanella with OmcS from Geobacter. The Journal of Physical Chemistry Letters, 11 (21). 9421–9425. ISSN 1948-7185

Clarke, Tom and Edwards, Marcus (2020) Uncovering nature’s electronics. Nature Chemical Biology, 16 (10). 1041–1042. ISSN 1552-4450

Li, Daobo, Edwards, Marcus, Blake, Anthony, Payne, Simone, Piper, Samuel, Jenner, Leon, Sokol, Katarzyna, Reisner, Erwin, Van Wonderen, Jessica, Clarke, Tom and Butt, Julea (2020) His/Met heme ligation in the PioA outer membrane cytochrome enabling light-driven extracellular electron transfer by Rhodopseudomonas palustris TIE-1. Nanotechnology, 31 (35). ISSN 0957-4484

Edwards, Marcus, White, Gaye, Butt, Julea, Richardson, David and Clarke, Tom (2020) The crystal structure of a biological insulated transmembrane molecular wire. Cell, 181 (3). 665-673.e10. ISSN 0092-8674

Edwards, Marcus J., Richardson, David J., Paquete, Catarina M. and Clarke, Thomas A. (2020) Role of multiheme cytochromes involved in extracellular anaerobic respiration in bacteria. Protein Science, 29 (4). pp. 830-842. ISSN 0961-8368

van Wonderen, Jessica H., Hall, Christopher R., Jiang, Xiuyun, Adamczyk, Katrin, Carof, Antoine, Heisler, Ismael, Piper, Samuel E. H., Clarke, Thomas A., Watmough, Nicholas J., Sazanovich, Igor V., Towrie, Michael, Meech, Stephen R., Blumberger, Jochen and Butt, Julea N. (2019) Ultrafast Light-Driven Electron Transfer in a Ru(II)tris(bipyridine)-Labelled Multiheme Cytochrome. Journal of the American Chemical Society, 141 (38). pp. 15190-15200. ISSN 0002-7863

Duarte, Américo G., Catarino, Teresa, White, Gaye F., Lousa, Diana, Neukirchen, Sinje, Soares, Cláudio M., Sousa, Filipa L., Clarke, Thomas A. and Pereira, Inês A.C. (2018) An electrogenic redox loop in sulfate reduction reveals a likely widespread mechanism of energy conservation. Nature Communications, 9. ISSN 2041-1723

Tokunou, Yoshihide, Chinotaikul, Punthira, Hattori, Shingo, Clarke, Thomas A., Shi, Liang, Hashimoto, Kazuhito, Ishii, Kazuyuki and Okamoto, Akihiro (2018) Whole-cell circular dichroism difference spectroscopy reveals an in vivo-specific deca-heme conformation in bacterial surface cytochromes. Chemical Communications, 54. pp. 13933-13936. ISSN 1359-7345

van Wonderen, Jessica H., Li, Daobo, Piper, Samuel E. H., Lau, Cheuk Y., Jenner, Leon P., Hall, Christopher R., Clarke, Thomas A., Watmough, Nicholas J. and Butt, Julea N. (2018) Photosensitised Multiheme Cytochromes as Light‐Driven Molecular Wires and Resistors. ChemBioChem, 19 (20). pp. 2206-2215. ISSN 1439-4227

Beblawy, Sebastian, Bursac, Thea, Paquete, Catarina, Louro, Ricardo, Clarke, Thomas A and Gescher, Johannes (2018) Extracellular reduction of solid electron acceptors by Shewanella oneidensis. Molecular Microbiology, 109 (5). pp. 571-583. ISSN 0950-382X

Edwards, Marcus J., White, Gaye F., Lockwood, Colin W., Lawes, Matthew C., Martel, Anne, Harris, Gemma, Scott, David J., Richardson, David J., Butt, Julea N. and Clarke, Thomas A. (2018) Structural modeling of an outer membrane electron conduit from a metal-reducing bacterium suggests electron transfer via periplasmic redox partners. Journal of Biological Chemistry, 293 (21). pp. 8103-8112. ISSN 0021-9258

Costa, Nazua L., Clarke, Thomas A., Philipp, Laura-Alina, Gescher, Johannes, Louro, Ricardo O. and Paquete, Catarina M. (2018) Electron transfer process in microbial electrochemical technologies: the role of cell-surface exposed conductive proteins. Bioresource Technology, 255. pp. 308-317. ISSN 0960-8524

Wang, Xin-Nan, Sun, Guo-Xin, Li, Xiao-Ming, Clarke, Thomas A. and Zhu, Yong-Guan (2018) Electron shuttle-mediated microbial Fe(III) reduction under alkaline conditions. Journal of Soils and Sediments, 18 (1). 159–168. ISSN 1439-0108

Lockwood, Colin, Van Wonderen, Jessica, Edwards, Marcus, Piper, Samuel, White, Gaye, Newton-Payne, Simone, Richardson, David, Clarke, Thomas and Butt, Julea (2018) Membrane-Spanning Electron Transfer Proteins from Electrogenic Bacteria:Production and Investigation. In: Methods in Enzymology. Elsevier, pp. 257-275.

Rowe, Sam F, Le Gall, Gwenaelle, Ainsworth, Emma V, Davies, Jonathan A, Lockwood, Colin WJ, Shi, Liang, Elliston, Adam, Roberts, Ian N, Waldron, Keith W, Richardson, David J, Clarke, Thomas A, Jeuken, Lars JC, Reisner, Erwin and Butt, Julea N (2017) Light-Driven H2-Evolution and C=C or C=O Bond Hydrogenation by Shewanella oneidensis: A Versatile Strategy for Photocatalysis by Nonphotosynthetic Microorganisms. ACS Catalysis, 7. 7558–7566. ISSN 2155-5435

Edwards, Marcus J., Gates, Andrew J., Butt, Julea N., Richardson, David J. and Clarke, Thomas A. (2017) Comparative structure-potentio-spectroscopy of the Shewanella outer membrane multiheme cytochromes. Current Opinion in Electrochemistry, 4 (1). pp. 199-205.

Hartop, Katherine, Sullivan, Matthew, Giannopoulos, George, Gates, Andrew, Bond, Philip, Yuan, Zhiguo, Clarke, Thomas, Rowley, Gary and Richardson, David (2017) The metabolic impact of extracellular nitrite on aerobic metabolism of Paracoccus denitrificans. Water Research, 113. 207–214. ISSN 0043-1354

Davies, Jonathan A., Clarke, Thomas A. and Butt, Julea N. (2017) Making Connections: An Amphiphilic Ferrocene Stimulates Bacterial Electricity Production. Chem, 2 (2). pp. 164-167.

Ainsworth, Emma V., Lockwood, Colin W. J., White, Gaye F., Hwang, Ee Taek, Sakai, Tsubasa, Gross, Manuela A., Richardson, David J., Clarke, Thomas A., Jeuken, Lars J. C., Reisner, Erwin and Butt, Julea N. (2016) Photoreduction of Shewanella oneidensis extracellular cytochromes by organic chromophores and dye-sensitized TiO2. ChemBioChem, 17 (24). 2324–2333. ISSN 1439-4227

Davies, Jonathan, Clarke, Tom, Butt, Julea and Richardson, David (2016) Carbon fixation via the formate dehydrogenases of Shewanella. New Biotechnology, 33. S110. ISSN 1871-6784

Norman, Michael, White, Gaye, Edwards, Marcus and Clarke, Tom (2016) Flavocytochrome at the microbe-mineral interface of Shewanella oneidensis under mineral respiring conditions. New Biotechnology, 33. S60-S61. ISSN 1871-6784

White, Gaye F., Edwards, Marcus J., Gomez-Perez, Laura, Richardson, David J., Butt, Julea N. and Clarke, Thomas A. (2016) Mechanisms of Bacterial Extracellular Electron Exchange. In: Advances in Microbial Physiology. Elsevier, pp. 87-138. ISBN 978-0-12-804822-1

Wang, Zheming, Shi, Zhi, Shi, Liang, White, Gaye, Richardson, David, Clarke, Tom, Fredrickson, Jim and Zachara, John (2015) Effects of soluble flavin on heterogeneous electron transfer between surface exposed bacterial cytochromes and iron oxides. Geochimica et Cosmochimica Acta, 163. 299–310. ISSN 0016-7037

Edwards, Marcus, White, Gaye, Norman, Michael, Tome-Fernandez, Alice, Ainsworth, Emma, Shi, Liang, Fredrickson, Jim, Zachara, John, Butt, Julea, Richardson, David and Clarke, Tom (2015) Redox linked flavin sites in extracellular decaheme proteins involved in microbe-mineral electron transfer. Scientific Reports, 5. ISSN 2045-2322

Field, Sarah, Ryden, Peter, Wilson, David C, James, Stephen A., Roberts, Ian, Richardson, David, Waldron, Keith and Clarke, Tom (2015) Identification of furfural resistant strains of Saccharomyces cerevisiae and Saccharomyces paradoxus from a collection of environmental and industrial isolates. Biotechnology for Biofuels, 8.

Lockwood, Colin, Burlat, Benedicte, Cheesman, Myles, Kern, Melanie, Simon, Jorg, Clarke, Tom, Richardson, David and Butt, Julea (2015) Resolution of Key Roles for the Distal Pocket Histidine in Cytochrome c Nitrite Reductases. Journal of the American Chemical Society, 137 (8). 3059–3068. ISSN 0002-7863

Beckwith, Chris, Edwards, Marcus, Lawes, Matthew, Shi, Liang, Butt, Julea, Richardson, David and Clarke, Tom (2015) Characterisation of MtoD from Sideroxydans lithotrophicus: a cytochrome c electron shuttle used in lithoautotrophic growth. Frontiers in Microbiology, 6. ISSN 1664-302X

Liu, Yimo, Wang, Zheming, Liu, Juan, Levar, Caleb, Edwards, Marcus, Babauta, Jerome, Kennedy, David W., Shi, Zhi, Bayenal, Haluk, Bond, Daniel R., Clarke, Thomas A., Butt, Julea N., Richardson, David J., Rosso, Kevin M., Zachara, John M., Fredrickson, James K. and Shi, Liang (2014) A trans-outer membrane porin-cytochrome protein complex for extracellular electron transfer by Geobacter sulfurreducens PCA. Environmental Microbiology Reports, 6 (6). pp. 776-785. ISSN 1758-2229

Edwards, Marcus J, Baiden, Nanakow, Johs, Alexander, Tomanicek, Stephen J, Liang, Liyuan, Shi, Liang, Fredrickson, Jim K, Zachara, John M, Gates, Andrew J, Butt, Julea N, Richardson, David J and Clarke, Thomas A (2014) The X-ray crystal structure of Shewanella oneidensis OmcA reveals new insight at the microbe-mineral interface. FEBS Letters, 588 (10). pp. 1886-1890. ISSN 0014-5793

Doyle, Rose-Marie A.S., Richardson, David J., Clarke, Thomas A. and Butt, Julea N. (2013) Freely diffusing versus adsorbed protein: Which better mimics the cellular state of a redox protein? Electrochimica Acta, 110. pp. 73-78. ISSN 0013-4686

White, Gaye, Shi, Zhi, Shi, Liang, Wang, Zheming, Dohnalkova, Alice C., Marshall, Matthew J., Fredrickson, James K., Zachara, John M., Butt, Julea N., Richardson, David J. and Clarke, Thomas A. (2013) Rapid electron exchange between surface-exposed bacterial cytochromes and Fe(III) minerals. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 110 (16). pp. 6346-6351.

Richardson, David, Butt, Julea and Clarke, Tom (2013) Controlling electron transfer at the microbe-mineral interface. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 110 (19). pp. 7537-7538.

Edwards, Marcus J., Fredrickson, James K., Zachara, John M., Richardson, David J. and Clarke, Thomas A. (2012) Analysis of structural MtrC models based on homology with crystal structure of MtrF. Biochemical Society Transactions, 40 (6). pp. 1181-1185. ISSN 0300-5127

Edwards, Marcus J., Hall, Andrea, Shi, Liang, Fredrickson, James K., Zachara, John M., Butt, Julea N., Richardson, David J. and Clarke, Thomas A. (2012) The Crystal Structure of the Extracellular 11-heme Cytochrome UndA Reveals a Conserved 10-heme Motif and Defined Binding Site for Soluble Iron Chelates. Structure, 20 (7). pp. 1275-1284. ISSN 1878-4186

Shi, Liang, Rosso, Kevin M., Clarke, Thomas A., Richardson, David J., Zachara, John M. and Fredrickson, James K. (2012) Molecular Underpinnings of Fe(III) Oxide Reduction by Shewanella Oneidensis MR-1. Frontiers in Microbiology, 3. ISSN 1664-302X

Appia‑Ayme, Corinne, Hall, Andrea, Patrick, Elaine, Rajadurai, Shiny, Clarke, Thomas A. and Rowley, Gary (2012) ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR. Biochemical Journal, 442 (1). pp. 85-93. ISSN 0264-6021

Breuer, Marian, Zarzycki, Piotr, Shi, Liang, Clarke, Thomas A., Edwards, Marcus J., Butt, Julea N., Richardson, David J., Fredrickson, James K., Zachara, John M., Blumberger, Jochen and Rosso, Kevin M. (2012) Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF. Biochemical Society Transactions, 40 (6). pp. 1198-1203. ISSN 0300-5127

Felgate, Heather, Giannopoulos, George, Sullivan, Matthew J., Gates, Andrew J., Clarke, Thomas A., Baggs, Elizabeth, Rowley, Gary and Richardson, David J. (2012) The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways. Environmental Microbiology, 14 (7). pp. 1788-1800. ISSN 1462-2920

Richardson, DJ, Butt, JN, Fredrickson, JK, Zachara, JM, Shi, L, Edwards, M, White, G, Baiden, N, Gates, AJ, Marritt, SJ and Clarke, TA (2012) The ‘porin-cytochrome’ model for microbe-to-mineral electron transfer. Molecular Microbiology, 85 (2). pp. 201-212. ISSN 1365-2958

Richardson, David J., Edwards, Marcus J., White, Gaye F., Baiden, Nanakow, Hartshorne, Robert S., Fredrickson, Jim, Shi, Liang, Zachara, John, Gates, Andrew J., Butt, Julea N. and Clarke, Thomas A. (2012) Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration. Biochemical Society Transactions, 40 (3). pp. 493-500. ISSN 0300-5127

White, Gaye F., Shi, Zhi, Shi, Liang, Dohnalkova, Alice C., Fredrickson, James K., Zachara, John M., Butt, Julea N., Richardson, David J. and Clarke, Thomas A. (2012) Development of a Proteoliposome Model to Probe Transmembrane Electron-Transfer Reactions. Biochemical Society Transactions, 40 (6). pp. 1257-1260. ISSN 0300-5127

Boutemy, Laurence S., King, Stuart R. F., Win, Joe, Hughes, Richard K., Clarke, Thomas A., Blumenschein, Tharin M. A., Kamoun, Sophien and Banfield, Mark J. (2011) Structures of Phytophthora RXLR Effector Proteins: a conserved but adaptable fold underpins functional diversity. Journal of Biological Chemistry, 286 (41). pp. 35834-35842. ISSN 0021-9258

Clarke, Thomas A., Edwards, Marcus J., Gates, Andrew J., Hall, Andrea, White, Gaye F., Bradley, Justin, Reardon, Catherine L., Shi, Liang, Beliaev, Alexander S., Marshall, Matthew J., Wang, Zheming, Watmough, Nicholas J., Fredrickson, James K., Zachara, John M., Butt, Julea N. and Richardson, David J. (2011) Structure of a bacterial cell surface decaheme electron conduit. Proceedings of the National Academy of Sciences, 108 (23). pp. 9384-9389. ISSN 0027-8424

Clarke, Tom, Fairhurst, Shirley, Lowe, David J., Watmough, Nick and Eady, Robert R. (2011) Electron transfer and half-reactivity in nitrogenase. Biochemical Society Transactions, 39 (1). pp. 201-206. ISSN 0300-5127

Little, Richard, Salinas, Paloma, Slavny, Peter, Clarke, Thomas A. and Dixon, Ray (2011) Substitutions in the redox-sensing PAS domain of the NifL regulatory protein define an inter-subunit pathway for redox signal transmission. Molecular Microbiology, 82 (1). pp. 222-235. ISSN 1365-2958

Lockwood, C, Butt, JN, Clarke, TA and Richardson, DJ (2011) Molecular interactions between multihaem cytochromes: probing the protein–protein interactions between pentahaem cytochromes of a nitrite reductase complex. Biochemical Society Transactions, 39 (1). pp. 263-268. ISSN 0300-5127

Lockwood, CWJ, Clarke, TA, Butt, JN, Hemmings, AM and Richardson, DJ (2011) Characterization of the active site and calcium binding in cytochromecnitrite reductases. Biochemical Society Transactions, 39 (6). pp. 1871-1875. ISSN 0300-5127

Kemp, Gemma L., Clarke, Thomas A., Marritt, Sophie J., Lockwood, Colin, Poock, Susannah R., Hemmings, Andrew M., Richardson, David J., Cheesman, Myles R. and Butt, Julea N. (2010) Kinetic and thermodynamic resolution of the interactions between sulfite and the pentahaem cytochrome NrfA from Escherichia coli. Biochemical Journal, 431 (1). pp. 73-80. ISSN 0264-6021

Hartshorne, Robert S., Reardon, Catherine L., Ross, Daniel, Nuester, Jochen, Clarke, Thomas A., Gates, Andrew J., Mills, Paul C., Fredrickson, Jim K., Zachara, John M., Shi, Liang, Beliaev, Alex S., Marshall, Matthew J., Tien, Ming, Brantley, Susan, Butt, Julea N. and Richardson, David J. (2009) Characterization of an electron conduit between bacteria and the extracellular environment. Proceedings of the National Academy of Sciences, 106 (52). pp. 22169-22174. ISSN 0027-8424

Edwards, Marcus J., Flatman, Ruth H., Mitchenall, Lesley A., Stevenson, Clare E. M., Le, Tung B. K., Clarke, Thomas A., McKay, Adam R., Fiedler, Hans-Peter, Buttner, Mark J., Lawson, David M. and Maxwell, Anthony (2009) A Crystal Structure of the Bifunctional Antibiotic Simocyclinone D8, Bound to DNA Gyrase. Science, 326 (5958). pp. 1415-1418. ISSN 0036-8075

Tucker, Nicholas P., Hicks, Matthew G., Clarke, Thomas A., Crack, Jason C., Chandra, Govind, Le Brun, Nick E., Dixon, Ray and Hutchings, Matthew I. (2008) The transcriptional repressor protein NsrR senses nitric oxide directly via a [2Fe-2S] cluster. PLoS One, 3 (11). ISSN 1932-6203

Clarke, Thomas A., Kemp, Gemma L., Van Wonderen, Jessica H., Doyle, Rosie-Marie A. S., Cole, Jeffrey A., Tovell, Nick, Cheesman, Myles R., Butt, Julea N., Richardson, David J. and Hemmings, Andrew M. (2008) Role of a conserved gluatmine residue in tuning the catalytic activity of Escherichia coli cytochrome c nitrite reductase. Biochemistry, 47 (12). pp. 3789-3799.

Clarke, TA, Holley, T, Hartshorne, RS, Fredrickson, JK, Zachara, JM, Shi, L and Richardson, DJ (2008) The role of multihaem cytochromes in the respiration of nitrite in Eschericia coli and fe(III) in Shewanella oneidensis. Biochemical Society Transactions, 36 (5). pp. 1005-1010. ISSN 1470-8752

Clarke, Thomas A., Mills, Paul C., Poock, Susie R., Butt, Julea N., Cheesman, Myles R., Cole, Jeffrey A., Hinton, Jay C. D., Hemmings, Andrew M., Kemp, Gemma, Söderberg, Christopher A. G., Spiro, Stephen, Van Wonderen, Jessica and Richardson, David J. (2008) Escherichia coli cytochrome c nitrite reductase NrfA. Methods in Enzymology, 437. pp. 63-77. ISSN 1557-7988

Hartshorne, Robert S., Jepson, Brian N., Clarke, Tom A., Field, Sarah J., Fredrickson, Jim, Zachara, John, Shi, Liang, Butt, Julea N. and Richardson, DJ (2007) Characterization of Shewanella oneidensis MtrC: a cell-surface decaheme cytochrome involved in respiratory electron transport to extracellular electron acceptors. JBIC Journal of Biological Inorganic Chemistry, 12 (7). pp. 1083-1094. ISSN 0949-8257

Clarke, TA, Cole, JA, Richardson, DJ and Hemmings, AM (2007) The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA. Biochemical Journal, 406 (1). pp. 19-30.

Hartshorne, Robert S., Kern, Melanie, Meyer, Björn, Clarke, Thomas A., Karas, Michael, Richardson, David J. and Simon, Jörg (2007) A dedicated haem lyase is required for the maturation of a novel bacterial cytochrome c with unconventional covalent haem binding. Molecular Microbiology, 64 (4). pp. 1049-1060. ISSN 0950-382X

Jepson, Brian J. N., Mohan, Sudesh, Clarke, Thomas A., Gates, Andrew J., Cole, Jeffrey A., Butler, Clive S., Butt, Julea N., Hemmings, Andrew M. and Richardson, David J. (2007) Spectropotentiometric and structural analysis of the periplasmic nitrate reductase from Escherichia coli. Journal of Biological Chemistry, 282. pp. 6425-6437. ISSN 1083-351X

Ross, Daniel E., Ruebush, Shane S., Brantley, Susan L., Hartshorne, Robert S., Clarke, Thomas A., Richardson, David J. and Tien, Ming (2007) Characterization of Protein/Protein Interactions Involved in Iron Reduction by Shewanella oneidensis MR-1. Applied and Environmental Microbiology, 73. pp. 5797-5808.

Hemmings, AM, Clarke, TA, Burlat, B, Butt, JN, Cole, JA and Richardson, DJ (2006) Comparison of the structural and kinetic properties of the cytochrome c nitrite reductases from Escherichia coli, Wolinella succinogenes, Sulfurospirillum deleyianum and Desulfovibrio desulfuricans. Biochemical Society Transactions, 34 (1). pp. 143-145. ISSN 1470-8752

Hatzixanthis, Kostas, Clarke, Thomas A., Oubrie, Arthur, Richardson, David J., Turner, Raymond J. and Sargent, Frank (2005) Signal peptide-chaperone interactions on the twin-arginine protein transport pathway. Proceedings of the National Academy of Sciences, 102. pp. 8460-8465. ISSN 0027-8424

Burlat, B, Gwyer, JD, Poock, S, Clarke, TA, Cole, JA, Hemmings, AM, Cheesman, MR, Butt, JN and Richardson, DJ (2005) Cytochrome c nitrite reductase: from structural to physicochemical analysis. Biochemical Society Transactions, 33 (1). pp. 137-140. ISSN 1470-8752

Clarke, Thomas A., Dennison, Victoria, Seward, Harriet E., Burlat, Bénédicte, Cole, Jeffrey A., Hemmings, Andrew M. and Richardson, David J. (2004) Purification and spectropotentiometric characterization of Escherichia coli NrfB, a decaheme homodimer that transfers electrons to the decaheme periplasmic nitrite reductase complex. Journal of Biological Chemistry, 279 (40). pp. 41333-41339. ISSN 0021-9258

Clarke, Thomas A., Im, Sang-Choul, Bidwai, Anil and Waskell, Lucy (2004) The Role of the Length and Sequence of the Linker Domain of Cytochrome b5 in Stimulating Cytochrome P450 2B4 Catalysis. Journal of Biological Chemistry, 279 (35). pp. 36809-36818. ISSN 0021-9258

Clarke, TA and Waskell, LA (2003) The metabolism of clopidogrel is catalyzed by human cytochrome P450 3A and is inhibited by atorvastatin. Drug Metabolism & Disposition, 31 (1). pp. 53-59. ISSN 1521-009X

This list was generated on Tue Nov 24 06:59:27 2020 GMT.