Parasyraki, Eleftheria, Mallick, Medhavi, Hatch, Victoria, Vastolo, Viviana, Musheev, Michael, Karaulanov, Emil, Gopanenko, Alexandr, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Méndez-Lago, Maria, Han, Dandan, Schomacher, Lars, Mukherjee, Debasish and Niehrs, Christof
(2024)
5-formylcytosine is an activating epigenetic mark for Pol III during zygotic reprogramming.
Cell.
ISSN 0092-8674
(In Press)
Kretov, Dmitry A., Folkes, Leighton, Mora-Martin, Alexandra, Walawalkar, Isha A., Syedah, Imrat Noreen, Vanuytsel, Kim, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Murphy, George J. and Cifuentes, Daniel
(2024)
The miR-144/Hmgn2 regulatory axis orchestrates chromatin organization during erythropoiesis.
Nature Communications, 15.
ISSN 2041-1723
César-Razquin, Adrián, Casacuberta, Josep, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Federici, Silvia, Jacchia, Sara, Kagkli, Dafni Maria, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816 and Papadopoulou, Nikoletta
and
European Food Safety Authority (EFSA)
(2024)
Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants.
EFSA Journal, 22 (4).
ISSN 1831-4732
Mills, Lauren A., Moreno-Cabezuelo, José Ángel, Włodarczyk, Artur, Victoria, Angelo J., Mejias, Rebeca, Nenninger, Anja, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Bombelli, Paolo, Selao, Tiago T., McCormick, Alistair J. and Lea-Smith, David
ORCID: https://orcid.org/0000-0003-2463-406X
(2022)
Development of a biotechnology platform for the fast-growing cyanobacterium Synechococcus sp. PCC 11901.
Biomolecules, 12 (7).
ISSN 2218-273X
Billmeier, Martina, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Hall, Adam, Turnbull, Carly, Singh, Archana, Xu, Ping, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816 and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2022)
Mechanistic insights into non-coding Y RNA processing.
RNA Biology, 19 (1).
pp. 468-480.
ISSN 1547-6286
Hotzy, Cosima, Fowler, Emily, Kiehl, Berrit, Francis, Roy, Mason, Janet, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Rostant, Wayne
ORCID: https://orcid.org/0000-0002-3798-6251, Chapman, Tracey and Immler, Simone
(2022)
Evolutionary history of sexual selection affects microRNA profiles in Drosophila sperm.
Evolution, 76 (2).
pp. 310-319.
ISSN 0014-3820
Kanakis, Ioannis, Alameddine, Moussira, Folkes, Leighton, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Myrtziou, Ioanna, Ozanne, Susan, Peffers, Mandy, Goljanek-Whysall, Katarzyna and Vasilaki, Aphrodite
(2021)
Small-RNA sequencing reveals altered skeletal muscle microRNAs and snoRNAs signatures in weanling male offspring from mouse dams fed a low protein diet during lactation.
Cells, 10 (5).
ISSN 2073-4409
Mok, Gi Fay ORCID: https://orcid.org/0000-0002-5202-9062, Folkes, Leighton, Weldon, Shannon A., Maniou, Eirini, Martinez-Heredia, Victor, Godden, Alice M.
ORCID: https://orcid.org/0000-0001-5760-011X, Williams, Ruth M., Sauka-Spengler, Tatjana, Wheeler, Grant N.
ORCID: https://orcid.org/0000-0002-4335-8577, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816 and Münsterberg, Andrea E.
ORCID: https://orcid.org/0000-0002-4577-4240
(2021)
Characterising open chromatin in chick embryos identifies cis-regulatory elements important for paraxial mesoderm formation and axis extension.
Nature Communications, 12 (1).
ISSN 2041-1723
Augusto Bovolenta, Luiz, Pinhal, Danillo, Luis Acencio, Marcio, Casulli de Oliveira, Arthur, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Martins, Cesar and Nemke, Ley
(2020)
miRTil: An extensive repository for Nile Tilapia microRNA next generation sequencing data.
Cells, 9 (8).
ISSN 2073-4409
Kretov, Dmitry, Isha, Walawalkar, Mora-Martin, Alexandra, Shafik, Andrew, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Cifuentes, Daniel
(2020)
Ago2-dependent processing allows miR-451 to evade the global microRNA turnover elicited during erythropoiesis.
Molecular Cell, 78 (2).
317-328.e6.
ISSN 1097-2765
Bradley, Thomas and Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816
(2020)
FilTar: Using RNA-Seq data to improve microRNA target prediction accuracy in animals.
Bioinformatics, 36 (8).
2410–2416.
ISSN 1367-4803
Fowler, Emily, Chapman, Tracey, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Bradley, Thomas
(2019)
Divergence in transcriptional and regulatory responses to mating in male and female fruitflies.
Scientific Reports, 9.
ISSN 2045-2322
Penso-Dolfin, Luca, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Haerty, Wilfried and Di Palma, Federica
(2018)
The evolutionary dynamics of microRNAs in domestic mammals.
Scientific Reports, 8.
ISSN 2045-2322
Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Thody, Joshua, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2018)
The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs.
Bioinformatics, 34 (19).
3382–3384.
ISSN 1367-4803
Casacuberta, Josep, Nogué, Fabien, Naegeli, Hanspeter, Birch, Andrew Nicholas, De Schrijver, Adinda, Gralak, Mikołaj Antoni, Guerche, Philippe, Manachini, Barbara, Messéan, Antoine, Nielsen, Elsa Ebbesen, Robaglia, Christophe, Rostoks, Nils, Sweet, Jeremy, Tebbe, Christoph, Visioli, Francesco, Wal, Jean‐Michel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Schneeberger, Korbinian, Federici, Silvia, Ramon, Matthew, Papadopoulou, Nikoletta and Jones, Huw
(2018)
Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants.
EFSA Journal, 16 (7).
ISSN 1831-4732
Mok, Gi Fay ORCID: https://orcid.org/0000-0002-5202-9062, Lozano-Velasco, Estefania, Maniou, Eirini, Viaut, Camille, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816, Wheeler, Grant
ORCID: https://orcid.org/0000-0002-4335-8577 and Münsterberg, Andrea
ORCID: https://orcid.org/0000-0002-4577-4240
(2018)
miR-133-mediated regulation of the Hedgehog pathway orchestrates embryo myogenesis.
Development, 145 (12).
ISSN 0950-1991
Pinhal, Danillo, Bovolenta, Luiz A., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Oliveira, Arthur C., Nachtigall, Pedro G., Acencio, Marcio L., Patton, James G., Hilsdorf, Alexandre W. S., Lemke, Ney and Martins, Cesar
(2018)
Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased arm switching and increasing complexity of expression throughout development.
Scientific Reports, 8.
ISSN 2045-2322
Curson, Andrew R. J., Williams, Beth T. ORCID: https://orcid.org/0000-0002-8594-1269, Pinchbeck, Benjamin J., Sims, Leanne P., Bermejo Martínez, Ana, Rivera, Peter Paolo L., Kumaresan, Deepak, Mercadé, Elena, Spurgin, Lewis G., Carrión, Ornella, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816, Cattolico, Rose Ann, Kuzhiumparambil, Unnikrishnan, Guagliardo, Paul, Clode, Peta L., Raina, Jean-Baptiste and Todd, Jonathan D.
(2018)
DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton.
Nature Microbiology, 3.
430–439.
Ward, Nicole, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Higgins, Janet, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Munsterberg, Andrea
ORCID: https://orcid.org/0000-0002-4577-4240, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816 and Wheeler, Grant
ORCID: https://orcid.org/0000-0002-4335-8577
(2018)
microRNAs associated with early neural crest development in Xenopus laevis.
BMC Genomics, 19.
ISSN 1471-2164
Paicu, Claudia, Mohorianu, Irina-Ioana, Stocks, Matthew, Xu, Ping, Coince, Aurore, Billmeier, Martina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435 and Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816
(2017)
miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets.
Bioinformatics, 33 (16).
2446–2454.
ISSN 1367-4803
Fishwick, Carl, Higgins, Janet, Percival-Alwyn, Lawrence, Hustler, Arianna, Pearson, Joanna, Bastkowski, Sarah, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Swarbreck, David, Greenman, Chris D. and Southgate, Jennifer
(2017)
Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium.
Cell Death and Differentiation, 24.
pp. 809-818.
ISSN 1350-9047
Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock
ORCID: https://orcid.org/0000-0002-5653-738X, Swarbreck, David and Hogenhout, Saskia A.
(2017)
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species.
Genome Biology, 18.
ISSN 1474-760X
Houston, Ross, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Nogué, Fabien, Papadopoulou, Nikoletta, Ramon, Matthew and Waigmann, Elisabeth
and
European Food Safety Authority (EFSA)
(2017)
Assessment of the potential integration of the DNA plasmid vaccine CLYNAV into the salmon genome.
EFSA Journal, 15 (1).
ISSN 1831-4732
Kontra, Levente, Csorba, Tibor, Tavazza, Mario, Lucioli, Alessandra, Tavazza, Raffaela, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Tisza, Viktória, Medzhiradsky, Anna, Turina, Massimo and Burgyan, Jozsef
(2016)
Distinct effects of p19 RNA silencing suppressor on small RNA mediated pathways in plants.
PLoS Pathogens, 12 (10).
ISSN 1553-7374
Hatch, Victoria, Marin Barba, Marta, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Ford, Christopher, Ward, Nicole, Tomlinson, Matthew, Desanlis, Ines, Hendry, Adam, Hontelez, Saartje, van Krujsbergen, Ila, Veenstra, Gert Jan, Munsterberg, Andrea
ORCID: https://orcid.org/0000-0002-4577-4240 and Wheeler, Grant
ORCID: https://orcid.org/0000-0002-4335-8577
(2016)
The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification.
Developmental Biology, 416 (2).
361–372.
ISSN 0012-1606
Giusti, Juliana, Pinhal, Danillo, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Lovaglio Campos, Camilla, Munsterberg, Andrea
ORCID: https://orcid.org/0000-0002-4577-4240 and Martins, Cesar
(2016)
MicroRNA-10 modulates Hox genes expression during Nile tilapia embryonic development.
Mechanisms of Development, 140.
pp. 12-18.
ISSN 0925-4773
Penso-Dolfin, Luca, Swofford, Ross, Johnson, Jeremy, Alföldi, Jessica, Lindblad-Toh, Kerstin, Swarbreck, David, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Di Palma, Federica
(2016)
An improved microRNA annotation of the canine genome.
PLoS One, 11 (4).
ISSN 1932-6203
Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Kimbung Mbandi, Stanley, Jonas, Mario, Tong, Amy Hin Yan, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Moxon, Simon
ORCID: https://orcid.org/0000-0003-4644-1816, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Katneni, Vinaya Kumar, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Turner, Stephen W., Lok, Si, Christoffels, Alan and Orbán, László
(2016)
Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding.
PLoS Genetics, 12 (4).
ISSN 1553-7390
Hall, A E, Lu, W-T, Godfrey, J D, Antonov, A V, Paicu, C, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, T
ORCID: https://orcid.org/0000-0003-1492-5429, Wilczynska, A, Muller, P A J and Bushell, M
(2016)
The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration.
Cell Death & Disease, 7.
ISSN 2041-4889
Ahmed, Ayisha, Ward, Nicole J., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Lopez-Gomollon, Sara, Viaut, Camille, Tomlinson, Matthew L., Patrushev, Ilya, Gilchrist, Michael J., Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Dotlic, Dario, Munsterberg, Andrea E.
ORCID: https://orcid.org/0000-0002-4577-4240 and Wheeler, Grant N.
ORCID: https://orcid.org/0000-0002-4335-8577
(2015)
A database of microRNA expression patterns in Xenopus laevis.
PLoS One, 10 (10).
ISSN 1932-6203
Trieu, Trung Anh, Calo, Silvia, Nicolás, Francisco E., Vila, Ana, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Torres-Martínez, Santiago, Garre, Victoriano and Ruiz-Vázquez, Rosa M.
(2015)
A non-canonical RNA silencing pathway promotes mRNA degradation in basal fungi.
PLoS Genetics, 11 (4).
ISSN 1553-7390
Nicolás, Francisco E, Vila, Ana, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Cascales, María D, Torres-Martínez, Santiago, Ruiz-Vázquez, Rosa M and Garre, Victoriano
(2015)
The RNAi machinery controls distinct responses to environmental signals in the basal fungus Mucor circinelloides.
BMC Genomics, 16.
ISSN 1471-2164
Toseland, Andrew, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Mock, Thomas
ORCID: https://orcid.org/0000-0001-9604-0362 and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2014)
Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation.
BMC Genomics, 15.
ISSN 1471-2164
Lopez-Gomollon, Sara, Beckers, Matthew, Rathjen, Tina, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Maumus, Florian, Mohorianu, Irina, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Mock, Thomas
ORCID: https://orcid.org/0000-0001-9604-0362
(2014)
Global discovery and characterization of small non-coding RNAs in marine microalgae.
BMC Genomics, 15 (1).
ISSN 1471-2164
Cervantes, María, Vila, Ana, Nicolás, Francisco E., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, de Haro, Juan P., Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Torres-Martínez, Santiago and Ruiz-Vázquez, Rosa M.
(2013)
A single argonaute gene participates in exogenous and endogenous RNAi and controls cellular functions in the basal fungus Mucor circinelloides.
PLoS One, 8 (7).
ISSN 1932-6203
Mapleson, Daniel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2013)
MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome.
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1).
pp. 47-56.
ISSN 1552-5015
Folkes, Leighton, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Woolfenden, Hugh C., Stocks, Matthew B., Szittya, Gyorgy, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2012)
PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing.
Nucleic Acids Research, 40 (13).
ISSN 0305-1048
Stocks, Matthew B., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Mapleson, Daniel, Woolfenden, Hugh C., Mohorianu, Irina, Folkes, Leighton, Schwach, Frank, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2012)
The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets.
Bioinformatics, 28 (15).
pp. 2059-2061.
ISSN 1367-4803
Bateman, Alex, Agrawal, Shipra, Birney, Ewan, Bruford, Elspeth A, Bujnicki, Janusz M, Cochrane, Guy, Cole, James R, Dinger, Marcel E, Enright, Anton J, Gardner, Paul P, Gautheret, Daniel, Griffiths-Jones, Sam, Harrow, Jen, Herrero, Javier, Holmes, Ian H, Huang, Hsien-Da, Kelly, Krystyna A, Kersey, Paul, Kozomara, Ana, Lowe, Todd M, Marz, Manja, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Pruitt, Kim D, Samuelsson, Tore, Stadler, Peter F, Vilella, Albert J, Vogel, Jan-Hinnerk, Williams, Kelly P, Wright, Mathew W and Zwieb, Christian
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RNAcentral: A vision for an international database of RNA sequences.
RNA, 17.
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ISSN 1355-8382
Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Szittya, G, Sorefan, K, Moulton, V
ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, T
ORCID: https://orcid.org/0000-0003-1492-5429
(2011)
Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns.
The Plant Journal, 67 (2).
pp. 232-246.
ISSN 1365-313X
Surridge, Alison K., Lopez-Gomollon, Sara, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Maroja, Luana S., Rathjen, Tina, Nadeau, Nicola J., Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Jiggins, Chris D.
(2011)
Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene.
BMC Genomics, 12.
ISSN 1471-2164
Szittya, Gyorgy, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435, Burgyan, Jozsef and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2010)
Structural and functional analysis of viral siRNAs.
PLoS Pathogens, 6 (4).
ISSN 1553-7374
Nicolas, Francisco Esteban, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, de Haro, Juan P., Calo, Silvia, Grigoriev, Igor V., Torres-Martinez, Santiago, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435, Ruiz-Vazquez, Rosa M. and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2010)
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides.
Nucleic Acids Research, 38 (16).
pp. 5535-5541.
ISSN 0305-1048
Pantaleo, Vitantonio, Saldarelli, Pasquale, Miozzi, Laura, Giampetruzzi, Annalisa, Gisel, Andreas, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Bisztray, György and Burgyan, Jozsef
(2010)
Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine.
Virology, 408 (1).
pp. 49-56.
ISSN 1096-0341
Pantaleo, Vitantonio, Szittya, György, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Miozzi, Laura, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Burgyan, Jozsef
(2010)
Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis.
The Plant Journal, 62 (6).
pp. 960-976.
ISSN 1365-313X
Navarro, Beatriz, Pantaleo, Vitantonio, Gisel, Andreas, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, Bisztray, György, Di Serio, Francesco and Burgyán, József
(2009)
Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction.
PLoS One, 4 (11).
ISSN 1932-6203
Schwach, Frank, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2009)
Deciphering the diversity of small RNAs in plants: the long and short of it.
Briefings in Functional Genomics and Proteomics, 8 (6).
pp. 472-481.
ISSN 1473-9550
Szittya, György, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Santos, Dulce M., Jing, Runchan, Fevereiro, Manuel P. S., Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2008)
High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families.
BMC Genomics, 9.
ISSN 1471-2164
Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Jing, Runchan, Szittya, Gyorgy, Schwach, Frank, Rusholme Pilcher, Rachel L., Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2008)
Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening.
Genome Research, 18 (10).
pp. 1602-1609.
ISSN 1088-9051
Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435 and Kim, Jan T.
(2008)
A scoring matrix approach to detecting miRNA target sites.
Algorithms for Molecular Biology, 3 (3).
ISSN 1748-7188
Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Schwach, Frank, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429, MacLean, Dan, Studholme, David J. and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2008)
A toolkit for analysing large-scale plant small RNA datasets.
Bioinformatics, 24 (19).
pp. 2252-2253.
ISSN 1367-4803
Rusholme Pilcher, Rachel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Pakseresht, Nima, Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429
(2007)
Identification of novel short RNAs in tomato (Solanum lycopersicum).
Planta, 226 (3).
pp. 709-717.
ISSN 0032-0935
Finn, Robert D, Mistry, Jaina, Schuster-Böckler, Benjamin, Griffiths-Jones, Sam, Hollich, Volker, Lassmann, Timo, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Marshall, Mhairi, Khanna, Ajay, Durbin, Richard, Eddy, Sean R, Sonnhammer, Erik L L and Bateman, Alex
(2006)
Pfam: clans, web tools and services.
Nucleic Acids Research, 34 (Suppl 1).
D247-D251.
ISSN 0305-1048
Griffiths-Jones, Sam, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Marshall, Mhairi, Khanna, Ajay, Eddy, Sean R and Bateman, Alex
(2005)
Rfam: annotating non-coding RNAs in complete genomes.
Nucleic Acids Research, 33 (Suppl 1).
D121-D124.
ISSN 0305-1048
Bateman, Alex, Coin, Lachlan, Durbin, Richard, Finn, Robert D, Hollich, Volker, Griffiths-Jones, Sam, Khanna, Ajay, Marshall, Mhairi, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Sonnhammer, Erik L L, Studholme, David J, Yeats, Corin and Eddy, Sean R
(2004)
The Pfam protein families database.
Nucleic Acids Research, 32 (Suppl 1).
D138-D141.
ISSN 0305-1048
Bradley, Thomas and Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816
(2017)
An assessment of the next generation of animal miRNA target prediction algorithms.
In:
MicroRNA Detection and Target Identification.
Methods in Molecular Biology
.
Springer, pp. 175-191.
ISBN 978-1-4939-6864-0
Pais, Helio, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas
ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent
ORCID: https://orcid.org/0000-0001-9371-6435
(2011)
Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches.
In:
RNA Infrastructure and Networks.
Advances in Experimental Medicine and Biology, 722
.
Springer, pp. 239-254.
ISBN 978-1-4939-4254-1
Pais, H, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, T
ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, V
ORCID: https://orcid.org/0000-0001-9371-6435
(2010)
Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches.
In:
Non-coding RNA networks.
Landes Bioscience.
ISBN 978-1-4614-0331-9
Bagnall, Anthony, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Studholme, David
(2007)
Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana.
Working Paper.
University of East Anglia.
Bagnall, A, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816 and Studholme, D
(2008)
Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana.
In: 2008 International Conference on Bioinformatics and Computational Biology, 2008-01-01.