Items where Author is "Moxon, Simon"

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Article

Mills, Lauren A., Moreno-Cabezuelo, José Ángel, Włodarczyk, Artur, Victoria, Angelo J., Mejias, Rebeca, Nenninger, Anja, Moxon, Simon, Bombelli, Paolo, Selao, Tiago T., McCormick, Alistair J. and Lea-Smith, David (2022) Development of a biotechnology platform for the fast-growing cyanobacterium Synechococcus sp. PCC 11901. Biomolecules, 12 (7). ISSN 2218-273X

Billmeier, Martina, Green, Darrell, Hall, Adam, Turnbull, Carly, Singh, Archana, Xu, Ping, Moxon, Simon and Dalmay, Tamas (2022) Mechanistic insights into non-coding Y RNA processing. RNA Biology, 19 (1). pp. 468-480. ISSN 1547-6286

Hotzy, Cosima, Fowler, Emily, Kiehl, Berrit, Francis, Roy, Mason, Janet, Moxon, Simon, Rostant, Wayne, Chapman, Tracey and Immler, Simone (2022) Evolutionary history of sexual selection affects microRNA profiles in Drosophila sperm. Evolution, 76 (2). pp. 310-319. ISSN 0014-3820

Kanakis, Ioannis, Alameddine, Moussira, Folkes, Leighton, Moxon, Simon, Myrtziou, Ioanna, Ozanne, Susan, Peffers, Mandy, Goljanek-Whysall, Katarzyna and Vasilaki, Aphrodite (2021) Small-RNA sequencing reveals altered skeletal muscle microRNAs and snoRNAs signatures in weanling male offspring from mouse dams fed a low protein diet during lactation. Cells, 10 (5). ISSN 2073-4409

Mok, Gi Fay, Folkes, Leighton, Weldon, Shannon A., Maniou, Eirini, Martinez-Heredia, Victor, Godden, Alice M., Williams, Ruth M., Sauka-Spengler, Tatjana, Wheeler, Grant N., Moxon, Simon and Münsterberg, Andrea E. (2021) Characterising open chromatin in chick embryos identifies cis-regulatory elements important for paraxial mesoderm formation and axis extension. Nature Communications, 12 (1). ISSN 2041-1723

Augusto Bovolenta, Luiz, Pinhal, Danillo, Luis Acencio, Marcio, Casulli de Oliveira, Arthur, Moxon, Simon, Martins, Cesar and Nemke, Ley (2020) miRTil: An extensive repository for Nile Tilapia microRNA next generation sequencing data. Cells, 9 (8). ISSN 2073-4409

Kretov, Dmitry, Isha, Walawalkar, Mora-Martin, Alexandra, Shafik, Andrew, Moxon, Simon and Cifuentes, Daniel (2020) Ago2-dependent processing allows miR-451 to evade the global microRNA turnover elicited during erythropoiesis. Molecular Cell, 78 (2). 317-328.e6. ISSN 1097-2765

Bradley, Thomas and Moxon, Simon (2020) FilTar: Using RNA-Seq data to improve microRNA target prediction accuracy in animals. Bioinformatics, 36 (8). 2410–2416. ISSN 1367-4803

Fowler, Emily, Chapman, Tracey, Moxon, Simon and Bradley, Thomas (2019) Divergence in transcriptional and regulatory responses to mating in male and female fruitflies. Scientific Reports, 9. ISSN 2045-2322

Penso-Dolfin, Luca, Moxon, Simon, Haerty, Wilfried and Di Palma, Federica (2018) The evolutionary dynamics of microRNAs in domestic mammals. Scientific Reports, 8. ISSN 2045-2322

Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon, Thody, Joshua, Dalmay, Tamas and Moulton, Vincent (2018) The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. Bioinformatics, 34 (19). 3382–3384. ISSN 1367-4803

Casacuberta, Josep, Nogué, Fabien, Naegeli, Hanspeter, Birch, Andrew Nicholas, De Schrijver, Adinda, Gralak, Mikołaj Antoni, Guerche, Philippe, Manachini, Barbara, Messéan, Antoine, Nielsen, Elsa Ebbesen, Robaglia, Christophe, Rostoks, Nils, Sweet, Jeremy, Tebbe, Christoph, Visioli, Francesco, Wal, Jean‐Michel, Moxon, Simon, Schneeberger, Korbinian, Federici, Silvia, Ramon, Matthew, Papadopoulou, Nikoletta and Jones, Huw (2018) Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants. EFSA Journal, 16 (7). ISSN 1831-4732

Mok, Gi Fay, Lozano-Velasco, Estefania, Maniou, Eirini, Viaut, Camille, Moxon, Simon, Wheeler, Grant and Münsterberg, Andrea (2018) miR-133-mediated regulation of the Hedgehog pathway orchestrates embryo myogenesis. Development, 145 (12). ISSN 0950-1991

Pinhal, Danillo, Bovolenta, Luiz A., Moxon, Simon, Oliveira, Arthur C., Nachtigall, Pedro G., Acencio, Marcio L., Patton, James G., Hilsdorf, Alexandre W. S., Lemke, Ney and Martins, Cesar (2018) Genome-wide microRNA screening in Nile tilapia reveals pervasive isomiRs’ transcription, sex-biased arm switching and increasing complexity of expression throughout development. Scientific Reports, 8. ISSN 2045-2322

Curson, Andrew R. J., Williams, Beth T., Pinchbeck, Benjamin J., Sims, Leanne P., Bermejo Martínez, Ana, Rivera, Peter Paolo L., Kumaresan, Deepak, Mercadé, Elena, Spurgin, Lewis G., Carrión, Ornella, Moxon, Simon, Cattolico, Rose Ann, Kuzhiumparambil, Unnikrishnan, Guagliardo, Paul, Clode, Peta L., Raina, Jean-Baptiste and Todd, Jonathan D. (2018) DSYB catalyses the key step of dimethylsulfoniopropionate biosynthesis in many phytoplankton. Nature Microbiology, 3. 430–439.

Ward, Nicole, Green, Darrell, Higgins, Janet, Dalmay, Tamas, Munsterberg, Andrea, Moxon, Simon and Wheeler, Grant (2018) microRNAs associated with early neural crest development in Xenopus laevis. BMC Genomics, 19. ISSN 1471-2164

Paicu, Claudia, Mohorianu, Irina-Ioana, Stocks, Matthew, Xu, Ping, Coince, Aurore, Billmeier, Martina, Dalmay, Tamas, Moulton, Vincent and Moxon, Simon (2017) miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. Bioinformatics, 33 (16). 2446–2454. ISSN 1367-4803

Fishwick, Carl, Higgins, Janet, Percival-Alwyn, Lawrence, Hustler, Arianna, Pearson, Joanna, Bastkowski, Sarah, Moxon, Simon, Swarbreck, David, Greenman, Chris D. and Southgate, Jennifer (2017) Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium. Cell Death and Differentiation, 24. pp. 809-818. ISSN 1350-9047

Mathers, Thomas C, Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T, Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J, Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon, Price, Daniel R G, Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C C, van Oosterhout, Cock, Swarbreck, David and Hogenhout, Saskia A (2017) Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 18. ISSN 1465-6906

Houston, Ross, Moxon, Simon, Nogué, Fabien, Papadopoulou, Nikoletta, Ramon, Matthew, Waigmann, Elisabeth and , European Food Safety Authority (EFSA) (2017) Assessment of the potential integration of the DNA plasmid vaccine CLYNAV into the salmon genome. EFSA Journal, 15 (1). ISSN 1831-4732

Kontra, Levente, Csorba, Tibor, Tavazza, Mario, Lucioli, Alessandra, Tavazza, Raffaela, Moxon, Simon, Tisza, Viktória, Medzhiradsky, Anna, Turina, Massimo and Burgyan, Jozsef (2016) Distinct Effects of p19 RNA Silencing Suppressor on Small RNA Mediated Pathways in Plants. PLoS Pathogens, 12 (10). ISSN 1553-7374

Hatch, Victoria, Marin Barba, Marta, Moxon, Simon, Ford, Christopher, Ward, Nicole, Tomlinson, Matthew, Desanlis, Ines, Hendry, Adam, Hontelez, Saartje, van Krujsbergen, Ila, Veenstra, Gert Jan, Munsterberg, Andrea and Wheeler, Grant (2016) The positive transcriptional elongation factor (P-TEFb) is required for neural crest specification. Developmental Biology, 416 (2). 361–372. ISSN 0012-1606

Giusti, Juliana, Pinhal, Danillo, Moxon, Simon, Lovaglio Campos, Camilla, Munsterberg, Andrea and Martins, Cesar (2016) MicroRNA-10 modulates Hox genes expression during Nile tilapia embryonic development. Mechanisms of Development, 140. pp. 12-18. ISSN 0925-4773

Penso-Dolfin, Luca, Swofford, Ross, Johnson, Jeremy, Alföldi, Jessica, Lindblad-Toh, Kerstin, Swarbreck, David, Moxon, Simon and Di Palma, Federica (2016) An improved microRNA annotation of the canine genome. PLoS One, 11 (4). ISSN 1932-6203

Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Kimbung Mbandi, Stanley, Jonas, Mario, Tong, Amy Hin Yan, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell, Moxon, Simon, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Katneni, Vinaya Kumar, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamas, Turner, Stephen W., Lok, Si, Christoffels, Alan and Orbán, László (2016) Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genetics, 12 (4). ISSN 1553-7404

Hall, A E, Lu, W-T, Godfrey, J D, Antonov, A V, Paicu, C, Moxon, S, Dalmay, T, Wilczynska, A, Muller, P A J and Bushell, M (2016) The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration. Cell Death & Disease, 7. ISSN 2041-4889

Ahmed, Ayisha, Ward, Nicole J., Moxon, Simon, Lopez-Gomollon, Sara, Viaut, Camille, Tomlinson, Matthew L., Patrushev, Ilya, Gilchrist, Michael J., Dalmay, Tamas, Dotlic, Dario, Munsterberg, Andrea E. and Wheeler, Grant N. (2015) A database of microRNA expression patterns in Xenopus laevis. PLoS One, 10 (10). ISSN 1932-6203

Trieu, Trung Anh, Calo, Silvia, Nicolás, Francisco E, Vila, Ana, Moxon, Simon, Dalmay, Tamas, Torres-Martínez, Santiago, Garre, Victoriano and Ruiz-Vázquez, Rosa M (2015) A non-canonical RNA silencing pathway promotes mRNA degradation in basal fungi. PLoS Genetics, 11 (4). ISSN 1553-7404

Nicolás, Francisco E, Vila, Ana, Moxon, Simon, Cascales, María D, Torres-Martínez, Santiago, Ruiz-Vázquez, Rosa M and Garre, Victoriano (2015) The RNAi machinery controls distinct responses to environmental signals in the basal fungus Mucor circinelloides. BMC Genomics, 16. ISSN 1471-2164

Toseland, Andrew, Moxon, Simon, Mock, Thomas and Moulton, Vincent (2014) Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation. BMC Genomics, 15. ISSN 1471-2164

Lopez-gomollon, Sara, Beckers, Matthew, Rathjen, Tina, Moxon, Simon, Maumus, Florian, Mohorianu, Irina, Moulton, Vincent, Dalmay, Tamas and Mock, Thomas (2014) Global discovery and characterization of small non-coding RNAs in marine microalgae. BMC Genomics, 15 (1). ISSN 1471-2164

Cervantes, María, Vila, Ana, Nicolás, Francisco E, Moxon, Simon, de Haro, Juan P, Dalmay, Tamas, Torres-Martínez, Santiago and Ruiz-Vázquez, Rosa M (2013) A Single Argonaute Gene Participates in Exogenous and Endogenous RNAi and Controls Cellular Functions in the Basal Fungus Mucor circinelloides. PLoS One, 8 (7). ISSN 1932-6203

Mapleson, Daniel, Moxon, Simon, Dalmay, Tamas and Moulton, Vincent (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Folkes, L, Moxon, S, Woolfenden, HC, Stocks, MB, Szittya, G, Dalmay, T and Moulton, V (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Research, 40 (13). e103-e103. ISSN 0305-1048

Stocks, Matthew B., Moxon, Simon, Mapleson, Daniel, Woolfenden, Hugh C., Mohorianu, Irina, Folkes, Leighton, Schwach, Frank, Dalmay, Tamas and Moulton, Vincent (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics, 28 (15). pp. 2059-2061. ISSN 1367-4803

Bateman, Alex, Agrawal, Shipra, Birney, Ewan, Bruford, Elspeth A, Bujnicki, Janusz M, Cochrane, Guy, Cole, James R, Dinger, Marcel E, Enright, Anton J, Gardner, Paul P, Gautheret, Daniel, Griffiths-Jones, Sam, Harrow, Jen, Herrero, Javier, Holmes, Ian H, Huang, Hsien-Da, Kelly, Krystyna A, Kersey, Paul, Kozomara, Ana, Lowe, Todd M, Marz, Manja, Moxon, Simon, Pruitt, Kim D, Samuelsson, Tore, Stadler, Peter F, Vilella, Albert J, Vogel, Jan-Hinnerk, Williams, Kelly P, Wright, Mathew W and Zwieb, Christian (2011) RNAcentral: A vision for an international database of RNA sequences. RNA, 17. pp. 1941-1946. ISSN 1355-8382

Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S, Szittya, G, Sorefan, K, Moulton, V and Dalmay, T (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. The Plant Journal, 67 (2). pp. 232-246. ISSN 1365-313X

Surridge, Alison K., Lopez-Gomollon, Sara, Moxon, Simon, Maroja, Luana S., Rathjen, Tina, Nadeau, Nicola J., Dalmay, Tamas and Jiggins, Chris D. (2011) Characterisation and expression of microRNAs in developing wings of the neotropical butterfly Heliconius melpomene. BMC Genomics, 12. ISSN 1471-2164

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. Adv Exp Med Biol, 722. pp. 239-254. ISSN 0065-2598

Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent, Burgyan, Jozsef and Dalmay, Tamas (2010) Structural and functional analysis of viral siRNAs. PLoS Pathogens, 6 (4). ISSN 1553-7374

Nicolas, F. E., Moxon, Simon, de Haro, J. P., Calo, S., Grigoriev, I. V., Torres-Martinez, S., Moulton, Vincent, Ruiz-Vazquez, R. M. and Dalmay, Tamas (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Research, 38 (16). pp. 5535-5541. ISSN 0305-1048

Pantaleo, Vitantonio, Saldarelli, Pasquale, Miozzi, Laura, Giampetruzzi, Annalisa, Gisel, Andreas, Moxon, Simon, Dalmay, Tamas, Bisztray, György and Burgyan, Jozsef (2010) Deep sequencing analysis of viral short RNAs from an infected Pinot Noir grapevine. Virology, 408 (1). pp. 49-56. ISSN 1096-0341

Pantaleo, Vitantonio, Szittya, György, Moxon, Simon, Miozzi, Laura, Moulton, Vincent, Dalmay, Tamas and Burgyan, Jozsef (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. The Plant Journal, 62 (6). pp. 960-976. ISSN 1365-313X

Navarro, Beatriz, Pantaleo, Vitantonio, Gisel, Andreas, Moxon, Simon, Dalmay, Tamas, Bisztray, György, Di Serio, Francesco and Burgyán, József (2009) Deep sequencing of viroid-derived small RNAs from grapevine provides new insights on the role of RNA silencing in plant-viroid interaction. PLoS One, 4 (11). ISSN 1932-6203

Schwach, Frank, Moxon, Simon, Moulton, Vincent and Dalmay, Tamas (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Briefings in Functional Genomics and Proteomics, 8 (6). pp. 472-481. ISSN 1473-9550

Szittya, György, Moxon, Simon, Santos, Dulce M., Jing, Runchan, Fevereiro, Manuel P. S., Moulton, Vincent and Dalmay, Tamas (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9. ISSN 1471-2164

Moxon, S, Jing, R, Szittya, G, Schwach, F, Rusholme Pilcher, RL, Moulton, V and Dalmay, T (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Moxon, Simon, Moulton, Vincent and Kim, Jan T. (2008) A scoring matrix approach to detecting miRNA target sites. Algorithms for Molecular Biology, 3 (3). ISSN 1748-7188

Moxon, Simon, Schwach, Frank, Dalmay, Tamas, MacLean, Dan, Studholme, David J. and Moulton, Vincent (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Rusholme Pilcher, Rachel, Moxon, Simon, Pakseresht, Nima, Moulton, Vincent, Manning, Kenneth, Seymour, Graham and Dalmay, Tamas (2007) Identification of novel short RNAs in tomato (Solanum lycopersicum). Planta, 226 (3). pp. 709-717. ISSN 0032-0935

Finn, Robert D, Mistry, Jaina, Schuster-Böckler, Benjamin, Griffiths-Jones, Sam, Hollich, Volker, Lassmann, Timo, Moxon, Simon, Marshall, Mhairi, Khanna, Ajay, Durbin, Richard, Eddy, Sean R, Sonnhammer, Erik L L and Bateman, Alex (2006) Pfam: clans, web tools and services. Nucleic Acids Research, 34 (Suppl 1). D247-D251. ISSN 0305-1048

Griffiths-Jones, Sam, Moxon, Simon, Marshall, Mhairi, Khanna, Ajay, Eddy, Sean R and Bateman, Alex (2005) Rfam: annotating non-coding RNAs in complete genomes. Nucleic Acids Research, 33 (Suppl 1). D121-D124. ISSN 0305-1048

Bateman, Alex, Coin, Lachlan, Durbin, Richard, Finn, Robert D, Hollich, Volker, Griffiths-Jones, Sam, Khanna, Ajay, Marshall, Mhairi, Moxon, Simon, Sonnhammer, Erik L L, Studholme, David J, Yeats, Corin and Eddy, Sean R (2004) The Pfam protein families database. Nucleic Acids Research, 32 (Suppl 1). D138-D141. ISSN 0305-1048

Book Section

Bradley, Thomas and Moxon, Simon (2017) An Assessment of the Next Generation of Animal miRNA Target Prediction Algorithms. In: MicroRNA Detection and Target Identification. Methods in Molecular Biology. Springer, pp. 175-191. ISBN 978-1-4939-6864-0

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2010) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: Non-coding RNA networks. Landes Bioscience. ISBN 978-1-4614-0331-9

Monograph

Bagnall, Anthony, Moxon, Simon and Studholme, David (2007) Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. Working Paper. University of East Anglia.

Conference or Workshop Item

Bagnall, A, Moxon, S and Studholme, D (2008) Time Series Data Mining Algorithms for Identifying Short RNA in Arabidopsis thaliana. In: 2008 International Conference on Bioinformatics and Computational Biology, 2008-01-01.

This list was generated on Wed Aug 17 09:47:58 2022 UTC.