Items where Research Group is "Wolfson Centre for Advanced Environmental Microbiology

Belshaw, Nigel, Grouneva, Irina, Aram, Lior, Gal, Assaf, Hopes, Amanda and Mock, Thomas (2023) Efficient gene replacement by CRISPR/Cas-mediated homologous recombination in the model diatom Thalassiosira pseudonana. New Phytologist, 238 (1). pp. 438-452. ISSN 0028-646X

Butt, Julea N., Jeuken, Lars J. C., Zhang, Huijie, Burton, Joshua A. J. and Sutton-Cook, Alexander L. (2023) Protein film electrochemistry. Nature Reviews Methods Primers, 3. ISSN 2662-8449

Carrion Fonseca, Ornella, Todd, Jonathan, Curson, Andrew, Walsham, Keanu, Zhu, Xiaoyu and Monaco, Serena (2023) DMSOP-cleaving enzymes are diverse and widely distributed in marine microorganisms. Nature Microbiology, 8 (12). pp. 2326-2337. ISSN 2058-5276

Casadevall, Carla, Lage, Ava, Mu, Manting, Greer, Heather F., Antón-García, Daniel, Butt, Julea N., Jeuken, Lars J. C., Watson, Graeme W., Garcia-Melchor, Max and Reisner, Erwin (2023) Size-dependent activity of carbon dots for photocatalytic H2 generation in combination with a molecular Ni cocatalyst. Nanoscale, 15 (38). pp. 15775-15784. ISSN 2040-3364

Clark, M. S., Hoffman, J. I., Peck, L. S., Bargelloni, L., Gande, D., Havermans, C., Meyer, B., Patarnello, T., Phillips, T., Stoof-leichsenring, K. R., Vendrami, D. L. J., Beck, A., Collins, G., Friedrich, M. W., Halanych, K. M., Masello, J. F., Nagel, R., Norén, K., Printzen, C., Ruiz, M. B., Wohlrab, S., Becker, B., Dumack, K., Ghaderiardakani, F., Glaser, K., Heesch, S., Held, C., John, U., Karsten, U., Kempf, S., Lucassen, M., Paijmans, A., Schimani, K., Wallberg, A., Wunder, L. C. and Mock, T. (2023) Multi-omics for studying and understanding polar life. Nature Communications, 14 (1). ISSN 2041-1723

Ding, Chenxiao, Xu, Xinji, Liu, Yaowei, Huang, Xing, Xi, MengYuan, Liu, Haiyang, Deyett, Elizabeth, Dumont, Marc G., Di, Hongjie, Hernández, Marcela, Xu, Jianming and Li, Yong (2023) Diversity and assembly of active bacteria and their potential function along soil aggregates in a paddy field. Science of the Total Environment, 866. ISSN 0048-9697

Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent and Mock, Thomas (2023) Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms. Data in Brief, 47. ISSN 2352-3409

Gray, Elizabeth, Stewart, Melissa Y. Y., Hanwell, Libby, Crack, Jason C., Devine, Rebecca, Stevenson, Clare E. M., Volbeda, Anne, Johnston, Andrew W. B., Fontecilla-Camps, Juan C., Hutchings, Matthew I., Todd, Jonathan D. and Le Brun, Nick E. (2023) Stabilisation of the RirA [4Fe–4S] cluster results in loss of iron-sensing function. Chemical Science, 14 (36). pp. 9744-9758. ISSN 2041-6520

He, Xiao-Yan, Liu, Ning-Hua, Liu, Ji-Qing, Peng, Ming, Teng, Zhao-Jie, Gu, Tie-Ji, Chen, Xiu-Lan, Chen, Yin, Wang, Peng, Li, Chun-Yang, Todd, Jonathan D., Zhang, Yu-Zhong and Zhang, Xi-Ying (2023) SAR92 clade bacteria are potentially important DMSP degraders and sources of climate-active gases in marine environments. mBIO, 14 (6). ISSN 2150-7511

Hernández, Marcela, Roy, Shamik, Keevil, C. William and Dumont, Marc (2023) Identification of diverse antibiotic resistant bacteria in agricultural soil with H218O stable isotope probing and metagenomics.

Hernández, Marcela, Roy, Shamik, Keevil, C. William and Dumont, Marc G. (2023) Identification of diverse antibiotic resistant bacteria in agricultural soil with H218O stable isotope probing combined with high-throughput sequencing. Environmental Microbiome, 18. ISSN 2524-6372

Hidalgo-García, Alba, Tortosa, Germán, Pacheco, Pedro J., Gates, Andrew J., Richardson, David J., Bedmar, Eulogio J., Girard, Lourdes, Torres, Maria J. and Delgado, Maria J. (2023) Rhizobium etli is able to emit nitrous oxide by connecting assimilatory nitrate reduction with nitrite respiration in the bacteroids of common bean nodules. Journal of Plant Interactions, 18 (1). ISSN 1742-9145

Li, Chun-Yang, Cao, Hai-Yan, Wang, Qing, Carrión, Ornella, Zhu, Xiaoyu, Miao, Jie, Wang, Peng, Chen, Xiu-Lan, Todd, Jonathan D. and Zhang, Yu-Zhong (2023) Aerobic methylation of hydrogen sulfide to dimethylsulfide in diverse microorganisms and environments. ISME Journal, 17 (8). pp. 1184-1193. ISSN 1751-7362

Li, Chun-Yang, Mausz, Michaela A., Murphy, Andrew, Zhang, Nan, Chen, Xiu-Lan, Wang, Shu-Yan, Gao, Chao, Aguilo-Ferretjans, María M., Silvano, Eleonora, Lidbury, Ian D. E. A., Fu, Hui-Hui, Todd, Jonathan D., Chen, Yin and Zhang, Yu-Zhong (2023) Ubiquitous occurrence of a dimethylsulfoniopropionate ABC transporter in abundant marine bacteria. ISME Journal, 17 (4). pp. 579-587. ISSN 1751-7362

Liu, Jian, Yu, Jiafeng, Tan, Yang, Run Dang, Zhou, Meng, Hernández, Marcela, Lichtfouse, Eric and Xiao, Leilei (2023) Biomethane is produced by acetate cleavage, not direct interspecies electron transfer: Genome-centric view and carbon isotope. Bioresource Technology, 387. ISSN 0960-8524

Mock, Thomas (2023) Algal model species for advancing biological sciences. Journal of Phycology, 59 (1). pp. 1-3. ISSN 0022-3646

Ni, Gaofeng, Lappan, Rachael, Hernández, Marcela, Santini, Talitha, Tomkins, Andrew G. and Greening, Chris (2023) Functional basis of primary succession: Traits of the pioneer microbes. Environmental Microbiology, 25 (1). pp. 171-176. ISSN 1462-2912

Norman, Michael P., Edwards, Marcus J., White, Gaye F., Burton, Joshua A. J., Butt, Julea N., Richardson, David J., Louro, Ricardo O., Paquete, Catarina M. and Clarke, Thomas A. (2023) A cysteine pair controls flavin reduction by extracellular cytochromes during anoxic/oxic environmental transitions. mBIO, 14 (1). ISSN 2150-7511

Otte, Antonia, Winder, Johanna C., Deng, Longji, Schmutz, Jeremy, Jenkins, Jerry, Grigoriev, Igor V., Hopes, Amanda and Mock, Thomas (2023) The diatom Fragilariopsis cylindrus: A model alga to understand cold‐adapted life. Journal of Phycology, 59 (2). pp. 301-306. ISSN 0022-3646

Oudova-Rivera, Barbora, Wright, Chloe L., Crombie, Andrew T., Murrell, J. Colin and Lehtovirta-Morley, Laura E. (2023) The effect of methane and methanol on the terrestrial ammonia-oxidizing archaeon ‘Candidatus Nitrosocosmicus franklandus C13’. Environmental Microbiology, 25 (5). pp. 948-961. ISSN 1462-2912

Pacheco, Pedro J., Cabrera, Juan J., Jimenez-Levia, Andrea, Torres, Maria J., Gates, Andrew J., Bedmar, Eulogio J., Richardson, David J., Mesa, Socorro, Tortosa, Germán and Delgado (EEZ - CSIC), Maria J. (2023) The copper-responsive regulator CsoR is indirectly involved in Bradyrhizobium diazoefficiens denitrification. FEMS Microbiology Letters, 370. ISSN 0378-1097

Pavlopoulos, Georgios A., Baltoumas, Fotis A., Liu, Sirui, Selvitopi, Oguz, Camargo, Antonio Pedro, Nayfach, Stephen, Azad, Ariful, Roux, Simon, Call, Lee, Ivanova, Natalia N., Chen, I. Min, Paez-Espino, David and Karatzas, Evangelos and Novel Metagenome Protein Families Consortium (2023) Unraveling the functional dark matter through global metagenomics. Nature, 622 (7983). pp. 594-602. ISSN 0028-0836

Pichler, Monica, Meindl, Andreas, Romberger, Markus, Eckes-Shephard, Annemarie, Nyberg-Brodda, Carl Fredrik, Buhigas, Claudia, Llaneza-Lago, Sergio, Lehmann, Gerhard, Hopes, Amanda, Meister, Gunter, Medenbach, Jan and Mock, Thomas (2023) Ribosome profiling in the model diatom Thalassiosira pseudonana. Current Protocols, 3 (7). ISSN 2691-1299

Priest, Taylor, von Appen, Wilken-Jon, Oldenburg, Ellen, Popa, Ovidiu, Torres-Valdés, Sinhué, Bienhold, Christina, Metfies, Katja, Boulton, William, Mock, Thomas, Fuchs, Bernhard M., Amann, Rudolf, Boetius, Antje and Wietz, Matthias (2023) Atlantic water influx and sea-ice cover drive taxonomic and functional shifts in Arctic marine bacterial communities. ISME Journal, 17 (10). pp. 1612-1625. ISSN 1751-7362

Sims, Leanne, Wright, Chloe, Crombie, Andrew, Dawson, Robin, Lockwood, Colin, Le Brun, Nick, Lehtovirta-Morley, Laura and Murrell, Colin (2023) Whole cell studies of substrate and inhibitor specificity of isoprene monooxygenase and related enzymes. Environmental Microbiology Reports, 15 (6). pp. 809-819. ISSN 1758-2229

Smith, Madison M., Angot, Hélène, Chamberlain, Emelia J., Droste, Elise S., Karam, Salar, Muilwijk, Morven, Webb, Alison L., Archer, Stephen D., Beck, Ivo, Blomquist, Byron W., Bowman, Jeff, Boyer, Matthew, Bozzato, Deborah, Chierici, Melissa, Creamean, Jessie, D'Angelo, Alessandra, Delille, Bruno, Fer, Ilker, Fong, Allison A., Fransson, Agneta, Fuchs, Niels, Gardner, Jessie, Granskog, Mats A., Hoppe, Clara J. M., Hoppema, Mario, Hoppmann, Mario, Mock, Thomas, Muller, Sofia, Müller, Oliver, Nicolaus, Marcel, Nomura, Daiki, Petäjä, Tuukka, Salganik, Evgenii, Schmale, Julia, Schmidt, Katrin, Schulz, Kirstin M., Shupe, Matthew D., Stefels, Jacqueline, Thielke, Linda, Tippenhauer, Sandra, Ulfsbo, Adam, van Leeuwe, Maria, Webster, Melinda, Yoshimura, Masaki and Zhan, Liyang (2023) Thin and transient meltwater layers and false bottoms in the Arctic sea ice pack—Recent insights on these historically overlooked features. Elementa: Science of the Anthropocene, 11 (1). ISSN 2325-1026

Stirrup, Rachel, Mausz, Michaela A., Silvano, Eleonora, Murphy, Andrew, Guillonneau, Richard, Quareshy, Mussa, Rihtman, Branko, Ferretjans, Maria Aguilo, He, Ruo, Todd, Jonathan D., Chen, Feng, Scanlan, David J. and Chen, Yin (2023) Aminolipids elicit functional trade-offs between competitiveness and bacteriophage attachment in Ruegeria pomeroyi. The ISME Journal, 17 (3). pp. 315-325. ISSN 1751-7362

Strauss, Jan, Deng, Longji, Gao, Shiqiang, Toseland, Andrew, Bachy, Charles, Zhang, Chong, Kirkham, Amy, Hopes, Amanda, Utting, Robert, Joest, Eike F., Tagliabue, Alessandro, Löw, Christian, Worden, Alexandra Z., Nagel, Georg and Mock, Thomas (2023) Plastid-localized xanthorhodopsin increases diatom biomass and ecosystem productivity in iron-limited surface oceans. Nature Microbiology, 8 (11). pp. 2050-2066. ISSN 2058-5276

Vera‐Gargallo, Blanca, Hernández, Marcela, Dumont, Marc G. and Ventosa, Antonio (2023) Thrive or survive: Prokaryotic life in hypersaline soils. Environmental Microbiome, 18. ISSN 2524-6372

Wang, Shu-Yan, Zhang, Nan, Teng, Zhao-Jie, Wang, Xiao-Di, Todd, Jonathan D., Zhang, Yu-Zhong, Cao, Hai-Yan and Li, Chun-Yang (2023) A new dimethylsulfoniopropionate lyase of the cupin superfamily in marine bacteria. Environmental Microbiology, 25 (7). pp. 1238-1249. ISSN 1462-2912

Winder, Johanna C., Boulton, William, Salamov, Asaf, Eggers, Sarah Lena, Metfies, Katja, Moulton, Vincent and Mock, Thomas (2023) Genetic and structural diversity of prokaryotic ice-binding proteins from the central Arctic Ocean. Genes, 14 (2). ISSN 2073-4425

Zhang, Huijie, Casadevall, Carla, van Wonderen, Jessica H., Su, Lin, Butt, Julea N., Reisner, Erwin and Jeuken, Lars J. C. (2023) Rational design of covalent multiheme cytochrome-graphitic carbon dot biohybrids for photo-induced electron transfer. Advanced Functional Materials, 33 (40). ISSN 1616-301X

Zhu, Xiao-Yu, Li, Yang, Xue, Chun-Xu, Lidbury, Ian D. E. A., Todd, Jonathan D., Lea-Smith, David J., Tian, Jiwei, Zhang, Xiao-Hua and Liu, Jiwen (2023) Deep-sea Bacteroidetes from the Mariana Trench specialize in hemicellulose and pectin degradation typically associated with terrestrial systems. Microbiome, 11. ISSN 2049-2618

Zhu, Xinshu, Deng, Yongcui, Hernández, Marcela, Fang, Jie, Xing, Peng and Liu, Yongqin (2023) Distinct responses of soil methanotrophy in hummocks and hollows to simulated glacier meltwater and temperature rise in Tibetan glacier foreland. Science of the Total Environment, 862. ISSN 0048-9697