Items where Research Group is "Plant Sciences

Published

Chiumenti, Michela, Mohorianu, Irina, Roseti, Vincenzo, Saldarelli, Pasquale, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Minafra, Angelantonio (2016) High-throughput-sequencing-based identification of a grapevine fanleaf virus satellite RNA in Vitis vinifera. Archives of Virology, 161 (5). pp. 1401-1403. ISSN 0304-8608

Couto, Daniel, Niebergall, Roda, Liang, Xiangxiu, Buecherl, Christoph, Sklenar, Jan, Macho, Alberto, Ntoukakis, Vardis, Derbyshire, Paul, Altenbach, Denise, MacLean, Dan, Robatzek, Silke, Uhrig, Joachim, Menke, Frank ORCID: https://orcid.org/0000-0003-2490-4824, Zhou, Jian-Min and Zipfel, Cyril (2016) The Arabidopsis protein phosphatase PP2C38 negatively regulates the central immune kinase BIK1. PLoS Pathogens, 12 (8). ISSN 1553-7366

Couto, Daniel and Zipfel, Cyril (2016) Regulation of pattern recognition receptor signalling in plants. Nature Reviews Immunology, 16 (9). 537–552. ISSN 1474-1733

Crowe, Natalie, Swingler, Tracey, Le, Linh, Barter, Matt, Wheeler, Guy, Pais, Helio, Donell, Simon, Young, David, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Clark, Ian (2016) Detecting new microRNAs in human osteoarthritic chondrocytes identifies miR-3085 as a human, chondrocyte-selective, microRNA. Osteoarthritis and Cartilage, 24 (3). pp. 534-543. ISSN 1063-4584

Dagdas, Yasin F, Belhaj, Khaoula, Maqbool, Abbas, Chaparro-Garcia, Angela, Pandey, Pooja, Petre, Benjamin, Tabassum, Nadra, Cruz-Mireles, Neftaly, Hughes, Richard K, Sklenar, Jan, Win, Joe, Menke, Frank ORCID: https://orcid.org/0000-0003-2490-4824, Findlay, Kim, Banfield, Mark J, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Bozkurt, Tolga O (2016) An effector of the Irish potato famine pathogen antagonizes a host autophagy cargo receptor. eLife, 5. ISSN 2050-084X

Derevnina, Lida, Dagdas, Yasin F., De La Concepcion, Juan Carlos, Bialas, Aleksandra, Kellner, Ronny, Petre, Benjamin, Domazakis, Emmanouil, Du, Juan, Wu, Chih-Hang, Lin, Xiao, Aguilera-Galvez, Carolina, Cruz-Mireles, Neftaly, Vleeshouwers, Vivianne G. A. A. and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2016) Nine things to know about elicitins. New Phytologist, 212 (4). 888–895. ISSN 0028-646X

Derevnina, Lida, Petre, Benjamin, Kellner, Ronny, Dagdas, Yasin, Sarowar, Mohammad Nasif, Giannakopoulou, Artemis, De la Concepcion, Juan Carlos, Chaparro-Garcia, Angela, Pennington, Helen G., van West, Pieter and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2016) Emerging oomycete threats to plants and animals. Philosophical Transactions of the Royal Society B, 371 (1709). ISSN 1471-2970

Duxbury, Zane, Ma, Yan, Furzer, Oliver, Huh, Sung Un, Cevik, Volkan, Jones, Jonathan and Sarris, Panagiotis (2016) Pathogen perception by NLRs in plants and animals: Parallel worlds. BioEssays, 38 (8). pp. 769-781. ISSN 0265-9247

Giannakopoulou, Artemis, Bialas, Aleksandra, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Vleeshouwers, Vivianne G A A (2016) Plant immunity switched from bacteria to virus. Nature Biotechnology, 34 (4). pp. 391-392. ISSN 1087-0156

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2016) Microguards and micromessengers of the genome. Heredity, 116. pp. 125-134. ISSN 0018-067X

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Fraser, William and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2016) Transfer RNA-derived small RNAs in the cancer transcriptome. Pflügers Archiv European Journal of Physiology, 468 (6). 1041–1047. ISSN 0031-6768

Hall, A E, Lu, W-T, Godfrey, J D, Antonov, A V, Paicu, C, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429, Wilczynska, A, Muller, P A J and Bushell, M (2016) The cytoskeleton adaptor protein ankyrin-1 is upregulated by p53 following DNA damage and alters cell migration. Cell Death & Disease, 7. ISSN 2041-4889

Hegenauer, Volker, Furst, Ursula, Kaiser, Bettina, Smoker, Matthew, Zipfel, Cyril, Felix, George, Stahl, Mark and Albert, Markus (2016) Detection of the plant parasite Cuscuta reflexa by a tomato cell surface receptor. Science, 353 (6298). pp. 478-481. ISSN 0036-8075

Hopes, Amanda, Nekrasov, Vladimir, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2016) Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana. Plant Methods, 12 (1). ISSN 1746-4811

Islam, M. Tofazzal, Croll, Daniel, Gladieux, Pierre, Soanes, Darren M., Persoons, Antoine, Bhattacharjee, Pallab, Hossain, Md. Shaid, Gupta, Dipali Rani, Rahman, Md. Mahbubur, Mahboob, M. Golam, Cook, Nicola, Salam, Moin U., Surovy, Musrat Zahan, Sancho, Vanessa Bueno, Maciel, João Leodato Nunes, Nhanijúnior, Antonio, Castroagudín, Vanina Lilián, de Assis Reges, Juliana T., Ceresini, Paulo Cezar, Ravel, Sebastien, Kellner, Ronny, Fournier, Elisabeth, Tharreau, Didier, Lebrun, Marc-Henri, McDonald, Bruce A., Stitt, Timothy, Swan, Daniel, Talbot, Nicholas J., Saunders, Diane G. O., Win, Joe and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2016) Emergence of wheat blast in Bangladesh was caused by a South American lineage of Magnaporthe oryzae. BMC Biology, 14. ISSN 1741-7007

Jones, Jonathan, Vance, Russell E. and Dangl, Jeffery L. (2016) Intracellular innate immune surveillance devices in plants and animals. Science, 354 (6316). ISSN 0036-8075

Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Zipfel, Cyril (2016) Fungal pathogenesis: Host modulation every which way. Nature Microbiology, 1 (6).

Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Zipfel, Cyril (2016) Scientific record:Class uncorrected errors as misconduct. Nature, 531 (7593). p. 173. ISSN 0028-0836

Kawashima, Cintia G., Augusto Guimaraes, Gustavo, Regina Nogueira, Sonia, Maclean, Dan, Cook, Doug R., Steuernagel, Burkhard, Baek, Jongmin, Bouyioukos, Costas, do V A Melo, Bernardo, Tristao, Gustavo, Camargos de Oliveira, Jamile, Rauscher, Gilda, Mittal, Shipra, Panichelli, Lisa, Bacot, Karen, Johnson, Ebony, Iyer, Geeta, Tabor, Girma, Wulff, Brande B. H., Ward, Eric, Rairdan, Gregory J., Broglie, Karen E., Wu, Gusui, Van Esse, H. Peter, Jones, Jonathan D. G. and Brommonschenkel, Sergio H. (2016) A pigeonpea gene confers resistance to Asian soybean rust in soybean. Nature Biotechnology, 34 (6). 661–665. ISSN 1087-0156

Laird, S, Brearley, Charles ORCID: https://orcid.org/0000-0001-6179-9109, Kuehn, I and Miller, HM (2016) The effect of high phytase doses on phytate degradation and myo-inositol release in the grower pig. Advances in Animal Biosciences, 7 (1). ISSN 2040-4719

Le, Linh T. T., Swingler, Tracey E., Crowe, Natalie, Vincent, Tonia L., Barter, Matthew J., Donell, Simon T., Delany, Anne M., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Young, David A. and Clark, Ian M. (2016) The microRNA-29 family in cartilage homeostasis and osteoarthritis. Journal of Molecular Medicine, 94 (5). pp. 583-596. ISSN 1432-1440

Magalhães, Diogo M., Silva Scholte, Larissa L., Silva, Nicholas V., Oliveira, Guilherme C., Zipfel, Cyril, Takita, Marco A. and A. Souza, Alessandra (2016) LRR-RLK family from two Citrus species: Genome-wide identification and evolutionary aspects. BMC Genomics, 17. ISSN 1471-2164

Maqbool, Abbas, Hughes, Richard K., Dagdas, Yasin F., Tregidgo, Nicholas, Zess, Erin, Belhaj, Khaoula, Round, Adam, Bozkurt, Tolga O., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Banfield, Mark J. (2016) Structural basis of host autophagy-related protein 8 (ATG8) binding by the Irish Potato Famine pathogen effector protein PexRD54. Journal of Biological Chemistry, 291 (38). pp. 20270-20282. ISSN 0021-9258

Mbengue, Malick, Bourdais, Gildas, Gervasi, Fabio, Beck, Martina, Zhou, Ji, Spallek, Thomas, Bartels, Sebastian, Boller, Thomas, Ueda, Takashi, Kuhn, Hannah and Robatzek, Silke (2016) Clathrin-dependent endocytosis is required for immunity mediated by pattern recognition receptor kinases. Proceedings of the National Academy of Sciences, 113 (39). 11034–11039. ISSN 0027-8424

Meteignier, Louis-Valentin, Zhou, Ji, Cohen, Mathias, Bhattacharjee, Saikat, Brosseau, Chantal, Chan, Maria Goretty Caamal, Robatzek, Silke and Moffett, Peter (2016) NB-LRR signaling induces translational repression of viral transcripts and the formation of RNA processing bodies through mechanisms differing from those activated by UV stress and RNAi. Journal of Experimental Botany, 67 (8). pp. 2353-2366. ISSN 0022-0957

Morales, Jorge, Kadota, Yasuhiro, Zipfel, Cyril, Molina, Antonio and Torres, Miguel-Angel (2016) The Arabidopsis NADPH oxidases RbohD and RbohF display differential expression patterns and contributions during plant immunity. Journal of Experimental Botany, 67 (6). pp. 1663-1676. ISSN 0022-0957

Petre, Benjamin, Lorrain, Cécile, Saunders, Diane G O, Win, Joe, Sklenar, Jan, Duplessis, Sébastien and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2016) Rust fungal effectors mimic host transit peptides to translocate into chloroplasts. Cellular Microbiology, 18 (4). pp. 453-465. ISSN 1462-5814

Petre, Benjamin, Saunders, Diane G O, Sklenar, Jan, Lorrain, Cécile, Krasileva, Ksenia V, Win, Joe, Duplessis, Sébastien and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2016) Heterologous expression screens in Nicotiana benthamiana identify a candidate effector of the wheat Yellow Rust Pathogen that associates with processing bodies. PLoS One, 11 (2). ISSN 1932-6203

Pfeilmeier, Sebastian, Saur, Isabel Marie-Luise, Rathjen, John Paul, Zipfel, Cyril and Malone, Jacob George ORCID: https://orcid.org/0000-0003-1959-6820 (2016) High levels of cyclic-di-GMP in plant-associated Pseudomonas correlate with evasion of plant immunity. Molecular Plant Pathology, 17 (4). pp. 521-531. ISSN 1464-6722

Salmon, Melissa, Thimmappa, Ramesha B., Minto, Robert E., Melton, Rachel E., Hughes, Richard K., O'Maille, Paul E., Hemmings, Andrew M. ORCID: https://orcid.org/0000-0003-3053-3134 and Osbourn, Anne (2016) A conserved amino acid residue critical for product and substrate specificity in plant triterpene synthases. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 113 (30). E4407–E4414. ISSN 1091-6490

Sarris, Panagiotis, Cevik, Volkan, Dagdas, Gulay, Jones, Jonathan and Krasileva, Ksenia (2016) Comparative analysis of plant immune receptor architectures uncovers host proteins likely targeted by pathogens. BMC Biology, 14. ISSN 1741-7007

Saur, Isabel M L, Kadota, Yasuhiro, Sklenar, Jan, Holton, Nicholas J, Smakowska, Elwira, Belkhadir, Youssef, Zipfel, Cyril and Rathjen, John P (2016) NbCSPR underlies age-dependent immune responses to bacterial cold shock protein in Nicotiana benthamiana. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 113 (12). pp. 3389-3394. ISSN 1091-6490

Steuernagel, Burkhard, Periyannan, Sambasivam K., Hernandez-Pinzon, Inmaculada, Witek, Kamil, Rouse, Matthew N., Yu, Guotai, Hatta, Asyraf, Ayliffe, Mick, Bariana, Harbans, Jones, Jonathan D. G., Lagudah, Evans S. and Wulff, Brande (2016) Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture. Nature Biotechnology, 34 (6). 652–655. ISSN 1087-0156

Trempel, Fabian, Kajiura, Hiroyuki, Ranf, Stefanie, Grimmer, Julia, Westphal, Lore, Zipfel, Cyril, Scheel, Dierk, Fujiyama, Kazuhito and Lee, Justin (2016) Altered glycosylation of exported proteins, including surface immune receptors, compromises calcium and downstream signaling responses to microbe-associated molecular patterns in Arabidopsis thaliana. BMC Plant Biology, 16. ISSN 1471-2229

Vij, Shubha, Kuhl, Heiner, Kuznetsova, Inna S., Komissarov, Aleksey, Yurchenko, Andrey A., Van Heusden, Peter, Singh, Siddharth, Thevasagayam, Natascha M., Prakki, Sai Rama Sridatta, Purushothaman, Kathiresan, Saju, Jolly M., Jiang, Junhui, Kimbung Mbandi, Stanley, Jonas, Mario, Tong, Amy Hin Yan, Mwangi, Sarah, Lau, Doreen, Ngoh, Si Yan, Liew, Woei Chang, Shen, Xueyan, Hon, Lawrence S., Drake, James P., Boitano, Matthew, Hall, Richard, Chin, Chen-Shan, Lachumanan, Ramkumar, Korlach, Jonas, Trifonov, Vladimir, Kabilov, Marsel, Tupikin, Alexey, Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Garvin, Tyler, Sedlazeck, Fritz J., Vurture, Gregory W., Gopalapillai, Gopikrishna, Katneni, Vinaya Kumar, Noble, Tansyn H., Scaria, Vinod, Sivasubbu, Sridhar, Jerry, Dean R., O'Brien, Stephen J., Schatz, Michael C., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Turner, Stephen W., Lok, Si, Christoffels, Alan and Orbán, László (2016) Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding. PLoS Genetics, 12 (4). ISSN 1553-7390

Witek, Kamil, Jupe, Florian, Witek, Agnieszka, Baker, David, Clark, Matthew D. and Jones, Jonathan D. G. (2016) Accelerated cloning of a potato late blight–resistance gene using RenSeq and SMRT sequencing. Nature Biotechnology, 34 (6). 656–660. ISSN 1087-0156

Wu, Chih-Hang, Belhaj, Khaoula, Bozkurt, Tolga O, Birk, Marlène S and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2016) Helper NLR proteins NRC2a/b and NRC3 but not NRC1 are required for Pto-mediated cell death and resistance in Nicotiana benthamiana. New Phytologist, 209 (4). pp. 1344-1352. ISSN 0028-646X

Xin, Xiu-Fang, Nomura, Kinya, Aung, Kyaw, Velásquez, Andre, Yao, Jian, Boutrot, Freddy, Chang, Jeff, Zipfel, Cyril and He, Sheng Yang (2016) Bacteria establish an aqueous living space in plants crucial for virulence. Nature, 539 (7630). 524–529. ISSN 0028-0836

Yeh, Yu-Hung, Panzeri, Dario, Kadota, Yasuhiro, Huang, Yi-Chun, Huang, Pin-Yao, Tao, Chia-Nan, Roux, Milena, Chien, Hsiao-Chiao, Chin, Tzu-Chuan, Chu, Po-Wei, Zipfel, Cyril and Zimmerli, Laurent (2016) The Arabidopsis malectin-like/LRR-RLK IOS1 is critical for BAK1-dependent and BAK1-ndependent pattern-triggered immunity. The Plant Cell, 28 (7). pp. 1701-1721. ISSN 1040-4651

Yoshida, Kentaro, Saunders, Diane G O, Mitsuoka, Chikako, Natsume, Satoshi, Kosugi, Shunichi, Saitoh, Hiromasa, Inoue, Yoshihiro, Chuma, Izumi, Tosa, Yukio, Cano, Liliana M, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Terauchi, Ryohei (2016) Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements. BMC Genomics, 17. ISSN 1471-2164

Yue, Kun, Sandal, Priyanka, Williams, Elisabeth L, Murphy, Evan, Stes, Elisabeth, Nikonorova, Natalia, Ramakrishna, Priya, Czyzewicz, Nathan, Montero-Morales, Laura, Kumpf, Robert, Lin, Zhefeng, van de Cotte, Brigitte, Iqbal, Mudassar, Van Bel, Michiel, Van De Slijke, Eveline, Meyer, Matthew R, Gadeyne, Astrid, Zipfel, Cyril, De Jaeger, Geert, Van Montagu, Marc, Van Damme, Daniël, Gevaert, Kris, Rao, A Gururaj, Beeckman, Tom and De Smet, Ive (2016) PP2A-3 interacts with ACR4 and regulates formative cell division in the Arabidopsis root. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 113 (5). pp. 1447-1452. ISSN 1091-6490