Items where Author is "Huber, Katharina"

Article

Huber, Katharina T., van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2025) Is this network proper forest-based? Information Processing Letters, 187. ISSN 0020-0190

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2024) Shared ancestry graphs and symbolic arboreal maps. SIAM Journal on Discrete Mathematics, 38 (4). pp. 2553-2577. ISSN 0895-4801

Huber, Katharina, Linz, Simone, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2024) Phylogenetic trees defined by at most three characters. Electronic Journal of Combinatorics. ISSN 1077-8926 (In Press)

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Owen, Megan, Spillner, Andreas and St. John, Katherine (2024) The space of equidistant phylogenetic cactuses. Annals of Combinatorics, 28. pp. 1-32. ISSN 0218-0006

Huber, Katharina T., van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Murakami, Yuki and Semple, Charles (2024) Orienting undirected phylogenetic networks. Journal of Computer and System Sciences, 140. ISSN 0022-0000

Holland, Barbara, Huber, Katharina T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2024) A distance-based model for convergent evolution. Journal of Mathematical Biology, 88. ISSN 0303-6812

Bryant, David, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Tupper, Paul F. (2023) Diversities and the generalized circumradius. Discrete and Computational Geometry, 70 (4). 1862–1883. ISSN 0179-5376

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2023) Computing consensus networks for collections of 1-nested phylogenetic networks. Journal of Graph Algorithms and Applications, 27 (7). pp. 541-563. ISSN 1526-1719

Hellmuth, Marc, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Scholz, Guillaume E. and Stadler, Peter F. (2023) Injective split systems. Graphs and Combinatorics, 39 (4). ISSN 0911-0119

Huber, Katharina T. and Maher, Liam J. (2023) Autopolyploidy, allopolyploidy, and phylogenetic networks with horizontal arcs. Bulletin of Mathematical Biology, 85 (5). ISSN 0092-8240

Francis, Andrew, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2023) Encoding and ordering X-cactuses. Advances in Applied Mathematics, 142. ISSN 0196-8858

Huber, Katharina T. and Maher, Liam J. (2022) The hybrid number of a ploidy profile. Journal of Mathematical Biology, 85 (3). ISSN 0303-6812

Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, G. E. (2022) Forest-based networks. Bulletin of Mathematical Biology, 84. ISSN 0092-8240

Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume (2022) Overlaid species forests. Discrete Applied Mathematics, 309. pp. 110-122. ISSN 0166-218X

Huber, Katharina, van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yuki (2022) Level-2 networks from shortest and longest distances. Discrete Applied Mathematics, 306. pp. 138-165. ISSN 0166-218X

Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2021) Optimal realizations and the block decomposition of a finite metric space. Discrete Applied Mathematics, 302. pp. 103-113. ISSN 0166-218X

Huber, Katharina T., Linz, Simone and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2021) The rigid hybrid number for two phylogenetic trees. Journal of Mathematical Biology, 82 (5). ISSN 0303-6812

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2020) Evolution through segmental duplications and losses: A super-reconciliation approach. Algorithms for Molecular Biology, 15 (1). ISSN 1748-7188

Hayamizu, Momoko, Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yukihiro (2020) Recognizing and realizing cactus metrics. Information Processing Letters, 157. ISSN 0020-0190

Huber, Katharina and Scholz, Guillaume E. (2020) Phylogenetic networks that are their own fold-ups. Advances in Applied Mathematics, 113. ISSN 0196-8858

Hellmuth, Marc, Huber, Katharina and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) Reconciling event-labeled gene trees with MUL-trees and species networks. Journal of Mathematical Biology, 79 (5). pp. 1885-1925. ISSN 0303-6812

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2019) Three-way symbolic tree-maps and ultrametrics. Journal of Classification, 36 (3). pp. 513-540. ISSN 0176-4268

Scholz, Guillaume E., Popescu, Andrei-Alin, Taylor, Martin I. ORCID: https://orcid.org/0000-0002-3858-0712, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. (2019) OSF-Builder: A new tool for constructing and representing evolutionary histories involving introgression. Systematic Biology, 68 (5). 717–729. ISSN 1063-5157

Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2019) Hierarchies from lowest stable ancestors in nonbinary phylogenetic networks. Journal of Classification, 36 (2). pp. 200-231. ISSN 0176-4268

Huber, Katharina T, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2019) Exploring and visualising spaces of tree reconciliations. Systematic Biology, 68 (4). pp. 607-618. ISSN 1063-5157

Huber, Katharina, Koolen, Jack H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) The polytopal structure of the tight-span of a totally split-decomposable metric. Discrete Mathematics, 342 (3). pp. 868-878. ISSN 0012-365X

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2019) Phylogenetic flexibility via Hall-type inequalities and submodularity. Journal of Mathematical Biology, 81 (2). 598–617. ISSN 0303-6812

Lafond, Manuel, El-Mabrouk, Nadia, Huber, Katharina T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. Theoretical Computer Science, 760. pp. 15-34. ISSN 0304-3975

Bordewich, Magnus, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2018) Recovering normal networks from shortest inter-taxa distance information. Journal of Mathematical Biology, 77 (3). 571–594. ISSN 0303-6812

Grunewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2018) Combinatorial properties of triplet covers for binary trees. Advances in Applied Mathematics, 99. pp. 59-82. ISSN 0196-8858

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2018) Geometric medians in reconciliation spaces of phylogenetic trees. Information Processing Letters, 136. pp. 96-101. ISSN 0020-0190

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Quarnet inference rules for level-1 networks. Bulletin of Mathematical Biology, 80 (8). 2137–2153. ISSN 0092-8240

Francis, Andrew, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Bounds for phylogenetic network space metrics. Journal of Mathematical Biology, 76 (5). 1229–1248. ISSN 0303-6812

Francis, Andrew, Huber, Katharina and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Tree-based unrooted phylogenetic networks. Bulletin of Mathematical Biology, 80 (2). 404–416. ISSN 0092-8240

Huber, Katharina and Scholz, Guillaume (2018) Beyond representing orthology relations by trees. Algorithmica, 80 (1). 73–103. ISSN 0178-4617

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2017) Minimum triplet covers of binary phylogenetic X-trees. Journal of Mathematical Biology, 75 (6-7). 1827–1840. ISSN 0303-6812

Gambette, Philippe, Huber, Katharina T. and Scholz, Guillaume E. (2017) Uprooted phylogenetic networks. Bulletin of Mathematical Biology, 79 (9). 2022–2048. ISSN 0092-8240

Gambette, Philippe, Huber, K. T. and Kelk, S. (2017) On the challenge of reconstructing level-1 phylogenetic networks from triplets and clusters. Journal of Mathematical Biology, 74 (7). 1729–1751. ISSN 0303-6812

Huber, Katharina, van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Scornavacca, Celine and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2017) Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. Algorithmica, 77 (1). pp. 173-200. ISSN 0178-4617

Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Steel, Mike and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2016) Folding and unfolding phylogenetic trees and networks. Journal of Mathematical Biology, 73 (6). 1761–1780. ISSN 0303-6812

Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2016) Transforming phylogenetic networks: Moving beyond tree space. Journal of Theoretical Biology, 404. pp. 30-39. ISSN 0022-5193

Dress, A, Huber, Katharina, Koolen, Jack, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2016) Characterizing block graphs in terms of their vertex-induced partitions. Australasian Journal of Combinatorics, 66 (1). pp. 1-9. ISSN 1034-4942

Huber, Katharina T., Linz, Simone, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2016) Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations. Journal of Mathematical Biology, 72 (3). pp. 699-725. ISSN 0303-6812

Popescu, Andrei-Alin and Huber, Katharina (2015) PSIKO2: a fast and versatile tool to infer population stratification on various levels in GWAS. Bioinformatics, 31 (21). pp. 3552-3554. ISSN 1367-4803

Huber, Katharina T. and Kettleborough, George (2015) Distinguished minimal topological lassos. SIAM Journal on Discrete Mathematics, 29 (2). 940–961. ISSN 0895-4801

Huber, Vincent T., van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2015) How much information is needed to infer reticulate evolutionary histories? Systematic Biology, 64 (1). pp. 102-111. ISSN 1063-5157

Kettleborough, George, Dicks, Jo L., Roberts, Ian N. and Huber, Katharina T. (2015) Reconstructing (super)trees from data sets with missing distances: Not all is lost. Molecular Biology and Evolution, 32 (6). pp. 1628-1642. ISSN 0737-4038

Popescu, Andrei-Alin, Harper, Andrea, Trick, Martin, Bancroft, Ian and Huber, Katharina T. (2014) A novel and fast approach for population structure inference using kernel-PCA and optimization (PSIKO). Genetics, 198 (4). pp. 1421-31. ISSN 1943-2631

Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Wu, T. ORCID: https://orcid.org/0000-0002-2663-2001 (2014) Representing partitions on trees. SIAM Journal on Discrete Mathematics, 28 (3). pp. 1152-1172. ISSN 0895-4801

Huber, Katharina T. and Steel, Mike (2014) Reconstructing fully-resolved trees from triplet cover distances. Electronic Journal of Combinatorics, 21 (2). ISSN 1077-8926

Dress, Andreas, Huber, Katharina T. and Steel, Mike (2014) A matroid associated with a phylogenetic tree. Discrete Mathematics and Theoretical Computer Science, 16 (2). pp. 41-56. ISSN 1365-8050

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica, 66 (3). pp. 714-738. ISSN 0178-4617

Popescu, Andrei-Alin and Huber, Katharina T. (2013) Lassoing and corralling rooted phylogenetic trees. Bulletin of Mathematical Biology, 75 (3). pp. 444-465. ISSN 0092-8240

Hellmuth, Marc, Hernandez-Rosales, Maribel, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Stadler, Peter F. and Wieseke, Nicolas (2013) Orthology relations, symbolic ultrametrics and cographs. Journal of Mathematical Biology, 66 (1-2). pp. 399-420.

Dress, Andreas W. M., Huber, Katharina T. and Steel, Mike (2012) ‘Lassoing’ a phylogenetic tree I: basic properties, shellings, and covers. Journal of Mathematical Biology, 65 (1). pp. 77-105. ISSN 0303-6812

Gambette, Philippe and Huber, Katharina T. (2012) On encodings of phylogenetic networks of bounded level. Journal of Mathematical Biology, 65 (1). pp. 157-180. ISSN 0303-6812

Herrmann, Sven, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2012) Recognizing treelike k-dissimilarities. Journal of Classification, 29 (3). pp. 321-340.

Huber, KT and Moulton, V (2012) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica. (In Press)

Popescu, Andrei-Alin, Huber, Katharina T. and Paradis, Emmanuel (2012) ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R. Bioinformatics, 28 (11). pp. 1536-1537. ISSN 1367-4803

Dress, A. W. M., Huber, K. T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Blocks and cut vertices of the Buneman graph. SIAM Journal on Discrete Mathematics, 25 (4). pp. 1902-1919.

Huber, Katharina T., Spillner, Andreas, Suchecki, Radoslaw and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Metrics on multi-labelled trees: interrelationships and diameter bounds. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (4). pp. 1029-1040. ISSN 1545-5963

Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158, Wagner, Gerd K., Wu, Qiong and Huber, Katharina T. (2010) Functional significance may underlie the taxonomic utility of single amino acid substitutions in conserved proteins. Journal of Molecular Evolution, 70 (4). pp. 395-402. ISSN 1432-1432

Byrka, Jaroslaw, Gawrychowski, Pawel, Huber, Katharina T. and Kelk, Steven (2010) Worst-case optimal approximation algorithms for maximizing triplet consistency within phylogenetic networks. Journal of Discrete Algorithms, 8 (1). pp. 65-75. ISSN 1570-8667

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2010) An algorithm for computing cutpoints in finite metric spaces. Journal of Classification, 27 (2). pp. 158-172.

Huber, Katharina T., van Iersel, Leo, Kelk, Steven and Suchecki, Radosław (2010) A practical algorithm for reconstructing level-1 phylogenetic networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (3). pp. 635-649. ISSN 1557-9964

Lott, Martin, Spillner, Andreas, Huber, Katharina T., Petri, Anna, Oxelman, Bengt and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Inferring polyploid phylogenies from multiply-labeled gene trees. BMC Evolutionary Biology, 9. ISSN 1471-2148

Grünewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Spillner, Andreas (2009) Characterizing weak compatibility in terms of weighted quartets. Advances in Applied Mathematics, 42 (3). pp. 329-341. ISSN 0196-8858

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) A graph-theoretical invariant of topological spaces. Applied Mathematics Letters, 22 (2). pp. 159-162.

Bordewich, Magnus, Gascuel, Olivier, Huber, Katharina T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 110-117. ISSN 1545-5963

Lott, Martin, Spillner, Andreas, Huber, Katharina T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) PADRE: A Package for Analyzing and Displaying Reticulate Evolution. Bioinformatics, 25 (9). pp. 1199-1200. ISSN 1367-4803

Holland, Barbara R., Benthin, Steffi, Lockhart, Peter J., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. (2008) Using supernetworks to distinguish hybridization from lineage-sorting. BMC Evolutionary Biology, 8. ISSN 1471-2148

Choe, Y., Koolen, J., Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Won, Y. (2008) Counting vertices and cubes in median graphs associated to circular split systems. European Journal of Combinatorics, 29 (2). pp. 443-456.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Cut points in metric spaces. Applied Mathematics Letters, 21 (6). pp. 545-548.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Compatible decompositions and block realizations of finite metrics. European Journal of Combinatorics, 29 (7). pp. 1617-1633.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Block realizations of finite metrics and the tight-span construction I: The embedding theorem. Applied Mathematics Letters (2). pp. 1306-1309.

Grünewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2008) Encoding phylogenetic trees in terms of weighted quartets. Journal of Mathematical Biology, 56 (4). pp. 465-477. ISSN 0303-6812

Grünewald, Stefan, Huber, Katharina T. and Wu, Qiong (2008) Two novel closure rules for constructing phylogenetic super-networks. Bulletin of Mathematical Biology, 70 (7). pp. 1906-1924. ISSN 0092-8240

Huber, Katharina T., Koolen, Jacobus, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2008) Characterizing cell-decomposable metrics. Electronic Journal of Combinatorics, 15 (1). ISSN 1077-8926

Huber, Katharina T., Lott, Martin, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2008) The complexity of deriving multi-labeled trees from bipartitions. Journal of Computational Biology, 15 (6). pp. 639-651. ISSN 1557-8666

Wu, Qiong, James, Steve A., Roberts, Ian N., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T (2008) Exploring contradictory phylogenetic relationships in yeasts. FEMS Yeast Research, 8 (4). pp. 641-650. ISSN 1567-1364

Brysting, Anne K., Oxelman, Bengt, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Brochmann, Christian (2007) Untangling complex histories of genome mergings in high polyploids. Systematic Biology, 56 (3). pp. 467-476. ISSN 1063-5157

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Some uses of the Farris Transform in mathematics and phylogenetics - A review. Annals of Combinatorics, 11 (1). pp. 1-37. ISSN 0218-0006

Holland, B., Conner, Glenn, Huber, Katharina T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Imputing supertrees and supernetworks from quartets. Systematic Biology, 56 (1). pp. 57-67. ISSN 1063-5157

Huber, K.T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2006) On the structure of the tight-span of a totally split-decomposable metric. European Journal of Combinatorics, 27 (3). pp. 461-479. ISSN 0195-6698

Dress, Andreas, Huber, Katharina T., Lesser, Alice and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2006) Hereditarily optimal realizations of consistent metrics. Annals of Combinatorics, 10 (1). pp. 63-67. ISSN 0218-0006

Grünewald, S. and Huber, K. T. (2006) A novel insight into the perfect phylogeny problem. Annals of Combinatorics, 10 (1). pp. 97-109. ISSN 0218-0006

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2006) Phylogenetic networks from multi-labelled trees. Journal of Mathematical Biology, 52 (5). pp. 613-632. ISSN 0303-6812

Huber, Katharina T., Oxelman, Bengt, Lott, Martin and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2006) Reconstructing the evolutionary history of polyploids from multilabeled trees. Molecular Biology and Evolution, 23 (9). pp. 1784-1791. ISSN 0737-4038

Huber, K. T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The tight span of an antipodal metric space: Part 1 - Combinatorial properties. Discrete Mathematics, 303 (1-3). pp. 65-79. ISSN 0012-365X

Bordewich, Magnus, Huber, Katharina T. and Semple, Charles (2005) Identifying phylogenetic trees. Discrete Mathematics, 300 (1-3). pp. 30-43. ISSN 0012-365X

Dress, A., Holland, B., Huber, K. T., Koolen, J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Weyer-Menkoff, J. (2005) Delta- additive and Delta-ultra-additive maps, Gromov's trees and the Farris transform. Discrete Applied Mathematics, 146 (1). pp. 51-73. ISSN 0166-218X

Holland, B., Huber, K.T., Penny, D. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The MinMax Squeeze: Guaranteeing a minimal tree for population data. Molecular Biology and Evolution, 22 (2). pp. 235-242. ISSN 0737-4038

Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Steel, M. (2005) Recovering a phylogenetic tree using pairwise closure operations. Applied Mathematics Letters, 18 (3). pp. 361-366. ISSN 0893-9659

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2005) Four characters suffice to convexly define a phylogenetic tree. SIAM Journal on Discrete Mathematics, 18 (4). pp. 835-843. ISSN 0895-4801

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2004) Replacing cliques by stars in quasi-median graphs. Discrete Applied Mathematics, 143 (1-3). pp. 194-203. ISSN 0166-218X

Huber, K. T. (2004) Recovering trees from well-separated multi-state characters. Discrete Mathematics, 278 (1-3). pp. 151-164. ISSN 0012-365X

Holland, Barbara R., Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Lockhart, Peter J. (2004) Using consensus networks to visualize contradictory evidence for species phylogeny. Molecular Biology and Evolution, 21 (7). pp. 1459-1461. ISSN 0737-4038

Huber, Katharina T., Koolen, Jacobus H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2004) The tight span of an antipodal metric space: Part II - Geometrical properties. Discrete and Computational Geometry, 31 (4). pp. 567-586. ISSN 0179-5376

Cieslik, D., Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2003) Connectivity calculus. Applied Mathematics Letters, 16 (3). pp. 395-399. ISSN 0893-9659

Holland, B. R., Huber, K. T., Dress, A. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) δ Plots: A tool for analyzing phylogenetic distance data. Molecular Biology and Evolution, 19 (12). pp. 2041-2059. ISSN 0737-4038

Bandelt, H.-J., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Quasi-median graphs from sets of partitions. Discrete Applied Mathematics, 122 (1-3). pp. 23-35. ISSN 0166-218X

Cieslik, D., Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Embedding complexity and discrete optimization I: A new divide and conquer approach to discrete optimization. Annals of Combinatorics, 6 (3-4). pp. 257-273. ISSN 0218-0006

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) An explicit computation of the injective hull of certain finite metric spaces in terms of their associated Buneman complex. Advances in Mathematics, 168 (1). pp. 1-28. ISSN 0001-8708

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) The relation graph. Discrete Mathematics, 244 (1-3). pp. 153-166. ISSN 0012-365X

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Antipodal metrics and split systems. European Journal of Combinatorics, 23 (2). pp. 187-200. ISSN 0195-6698

Cieslik, D., Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Embedding complexity and discrete optimization II: A dynamical programming approach to the Steiner-Tree Problem. Annals of Combinatorics, 6 (3-4). pp. 275-283. ISSN 0218-0006

Huber, Katharina T., Langton, Michael, Penny, David, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Hendy, Michael (2002) Spectronet: A package for computing spectra and median networks. Applied Bioinformatics, 1 (3). pp. 159-161. ISSN 1175-5636

Dress, A., Huber, K. T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2001) Six points suffice: How to check for metric consistency. European Journal of Combinatorics, 22 (4). pp. 465-474. ISSN 0195-6698

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Lockhart, Peter and Dress, Andreas (2001) Pruned median networks: a technique for reducing the complexity of median networks. Molecular Phylogenetics and Evolution, 19 (2). pp. 302-310. ISSN 1055-7903

Huber, K. T., Watson, E. E. and Hendy, M. D. (2001) An algorithm for constructing local regions in a phylogenetic network. Molecular Phylogenetics and Evolution, 19 (1). pp. 1-8. ISSN 1055-7903

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2001) Totally Split-Decomposable Metrics of Combinatorial Dimension Two. Annals of Combinatorics, 5 (1). pp. 99-112. ISSN 0218-0006

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2000) Affine maps that induce polyhedral complex isomorphisms. Discrete and Computational Geometry, 24 (1). pp. 49-60. ISSN 0179-5376

Dress, A. W. M., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2000) An exceptional split geometry. Annals of Combinatorics, 4 (1). pp. 1-11. ISSN 0218-0006

Book Section

Huber, Katharina and Gusfield, Dan (2019) 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). In: 19th International Workshop on Algorithms in Bioinformatics. Schloss Dagstuhl – Leibniz-Zentrum für Informatik GmbH, Dagstuhl Publishing, Saarbrücken/Wadern, Germany., LIPICS. ISBN 978-3-95977-123-8

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2018) Reconstructing the History of Syntenies Through Super-Reconciliation. In: Comparative Genomics. Lecture Notes in Computer Science, 11183 . Springer, pp. 179-195. ISBN 978-3-030-00833-8

Gruenewald, S and Huber, Katharina T. (2012) Identifying and defining trees. In: Reconstructing evolution: New Mathematical and computational advances. UNSPECIFIED.

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. (2012) Network analyses for exploring evolutionary relationships. In: The Phylogenetic Handbook 2nd edition. UNSPECIFIED.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jack H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) An algorithm for computing virtual cut points in finite metric spaces. In: Combinatorial Optimization and Applications. Lecture Notes in Computer Sciences . Springer. ISBN 978-3-540-73555-7

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) An algorithm for computing virtual cut points in finite metric spaces. In: Combinatorial Optimization and Applications. Lecture Notes in Computing Science, 4616 . Springer Berlin / Heidelberg, pp. 4-10.

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Phylogenetic networks. In: Mathematics of Evolution and Phylogeny. Oxford University Press, pp. 178-200. ISBN 978-0-19-856610-6

Conference or Workshop Item

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, A, Storandt, S and Suchecki, Radoslaw (2012) Computing a consensus of multilabeled trees. In: Meeting on Algorithm Engineering & Experiments (ALENEX12), 2012-01-16 - 2012-01-16.

Hernandez-Rosales, M, Hellmuth, M, Wieseke, N, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Stadler, PF (2012) From event-labeled gene trees to species trees. In: UNSPECIFIED.

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2003) Four characters suffice. In: Formal Power Series and Algebraic Combinatorics, 2003-06-23 - 2003-06-27, Linköping University.

Dress, A., Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2001) Metric spaces in pure and applied mathematics. In: Conference on Quadratic Forms and Related Topics, 2001-03-26 - 2001-03-30.

Book

Dress, A, Huber, Katharina, Koolen, J, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, A (2004) Basic Phylogenetic Combinatorics. Cambridge University Press.