Items where Author is "Huber, Katharina"

[up]

Group by: Item Type | Status | No Grouping

Jump to: Article | Book Section | Conference or Workshop Item | Book

Number of items: 133.

Article

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Overman, Darren ORCID: https://orcid.org/0009-0009-3453-1639 (2026) Arboreal networks and their underlying trees. Journal of Mathematical Biology, 92 (3). ISSN 0303-6812

Holtgrefe, Niels, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Jones, Mark and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2025) Characterizing semi-directed phylogenetic networks and their multi-rootable variants. Theory in Biosciences. ISSN 1431-7613 (In Press)

Bryant, David, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2025) Subtree distances, tight spans and diversities. Topology and its Applications, 373. ISSN 0166-8641

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Jones, Mark, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Veenema-Nipius, Leonie (2025) When are quarnets sufficient to reconstruct semi-directed phylogenetic networks? Bulletin of Mathematical Biology, 87 (10). ISSN 0092-8240

Bryant, David, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2025) Buneman graphs, partial splits and subtree distances. Discrete Applied Mathematics, 369. pp. 28-44. ISSN 0166-218X

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Linz, Simone and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2025) Cherry picking in forests: A new characterization for the unrooted hybrid number of two phylogenetic trees. Discrete Mathematics and Theoretical Computer Science, 272 (2). ISSN 1462-7264

Holtgrefe, Niels, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Jones, Mark, Martin, Samuel and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2025) SQUIRREL: Reconstructing semi-directed phylogenetic level-1 networks from four-leaved networks or sequence alignments. Molecular Biology and Evolution, 42 (4). ISSN 0737-4038

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2025) Is this network proper forest-based? Information Processing Letters, 187. ISSN 0020-0190

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2024) Shared ancestry graphs and symbolic arboreal maps. SIAM Journal on Discrete Mathematics, 38 (4). pp. 2553-2577. ISSN 0895-4801

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Linz, Simone, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2024) Phylogenetic trees defined by at most three characters. Electronic Journal of Combinatorics, 31 (4). ISSN 1077-8926

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Owen, Megan, Spillner, Andreas and St. John, Katherine (2024) The space of equidistant phylogenetic cactuses. Annals of Combinatorics, 28. pp. 1-32. ISSN 0218-0006

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Murakami, Yuki and Semple, Charles (2024) Orienting undirected phylogenetic networks. Journal of Computer and System Sciences, 140. ISSN 0022-0000

Holland, Barbara, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2024) A distance-based model for convergent evolution. Journal of Mathematical Biology, 88. ISSN 0303-6812

Bryant, David, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Tupper, Paul F. (2023) Diversities and the generalized circumradius. Discrete and Computational Geometry, 70 (4). 1862–1883. ISSN 0179-5376

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2023) Computing consensus networks for collections of 1-nested phylogenetic networks. Journal of Graph Algorithms and Applications, 27 (7). pp. 541-563. ISSN 1526-1719

Hellmuth, Marc, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Scholz, Guillaume E. and Stadler, Peter F. (2023) Injective split systems. Graphs and Combinatorics, 39 (4). ISSN 0911-0119

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Maher, Liam J. (2023) Autopolyploidy, allopolyploidy, and phylogenetic networks with horizontal arcs. Bulletin of Mathematical Biology, 85 (5). ISSN 0092-8240

Francis, Andrew, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2023) Encoding and ordering X-cactuses. Advances in Applied Mathematics, 142. ISSN 0196-8858

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Maher, Liam J. (2022) The hybrid number of a ploidy profile. Journal of Mathematical Biology, 85 (3). ISSN 0303-6812

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, G. E. (2022) Forest-based networks. Bulletin of Mathematical Biology, 84. ISSN 0092-8240

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume (2022) Overlaid species forests. Discrete Applied Mathematics, 309. pp. 110-122. ISSN 0166-218X

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yuki (2022) Level-2 networks from shortest and longest distances. Discrete Applied Mathematics, 306. pp. 138-165. ISSN 0166-218X

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2021) Optimal realizations and the block decomposition of a finite metric space. Discrete Applied Mathematics, 302. pp. 103-113. ISSN 0166-218X

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Linz, Simone and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2021) The rigid hybrid number for two phylogenetic trees. Journal of Mathematical Biology, 82 (5). ISSN 0303-6812

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2020) Evolution through segmental duplications and losses: A super-reconciliation approach. Algorithms for Molecular Biology, 15 (1). ISSN 1748-7188

Hayamizu, Momoko, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yukihiro (2020) Recognizing and realizing cactus metrics. Information Processing Letters, 157. ISSN 0020-0190

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Scholz, Guillaume E. (2020) Phylogenetic networks that are their own fold-ups. Advances in Applied Mathematics, 113. ISSN 0196-8858

Hellmuth, Marc, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) Reconciling event-labeled gene trees with MUL-trees and species networks. Journal of Mathematical Biology, 79 (5). pp. 1885-1925. ISSN 0303-6812

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2019) Three-way symbolic tree-maps and ultrametrics. Journal of Classification, 36 (3). pp. 513-540. ISSN 0176-4268

Scholz, Guillaume E., Popescu, Andrei-Alin, Taylor, Martin I. ORCID: https://orcid.org/0000-0002-3858-0712, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2019) OSF-Builder: A new tool for constructing and representing evolutionary histories involving introgression. Systematic Biology, 68 (5). 717–729. ISSN 1063-5157

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2019) Hierarchies from lowest stable ancestors in nonbinary phylogenetic networks. Journal of Classification, 36 (2). pp. 200-231. ISSN 0176-4268

Huber, Katharina T ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2019) Exploring and visualising spaces of tree reconciliations. Systematic Biology, 68 (4). pp. 607-618. ISSN 1063-5157

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jack H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) The polytopal structure of the tight-span of a totally split-decomposable metric. Discrete Mathematics, 342 (3). pp. 868-878. ISSN 0012-365X

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2019) Phylogenetic flexibility via Hall-type inequalities and submodularity. Journal of Mathematical Biology, 81 (2). 598–617. ISSN 0303-6812

Lafond, Manuel, El-Mabrouk, Nadia, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. Theoretical Computer Science, 760. pp. 15-34. ISSN 0304-3975

Bordewich, Magnus, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2018) Recovering normal networks from shortest inter-taxa distance information. Journal of Mathematical Biology, 77 (3). 571–594. ISSN 0303-6812

Grunewald, Stefan, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2018) Combinatorial properties of triplet covers for binary trees. Advances in Applied Mathematics, 99. pp. 59-82. ISSN 0196-8858

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2018) Geometric medians in reconciliation spaces of phylogenetic trees. Information Processing Letters, 136. pp. 96-101. ISSN 0020-0190

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Quarnet inference rules for level-1 networks. Bulletin of Mathematical Biology, 80 (8). 2137–2153. ISSN 0092-8240

Francis, Andrew, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Bounds for phylogenetic network space metrics. Journal of Mathematical Biology, 76 (5). 1229–1248. ISSN 0303-6812

Francis, Andrew, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Tree-based unrooted phylogenetic networks. Bulletin of Mathematical Biology, 80 (2). 404–416. ISSN 0092-8240

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Scholz, Guillaume (2018) Beyond representing orthology relations by trees. Algorithmica, 80 (1). 73–103. ISSN 0178-4617

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2017) Minimum triplet covers of binary phylogenetic X-trees. Journal of Mathematical Biology, 75 (6-7). 1827–1840. ISSN 0303-6812

Gambette, Philippe, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Scholz, Guillaume E. (2017) Uprooted phylogenetic networks. Bulletin of Mathematical Biology, 79 (9). 2022–2048. ISSN 0092-8240

Gambette, Philippe, Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Kelk, S. (2017) On the challenge of reconstructing level-1 phylogenetic networks from triplets and clusters. Journal of Mathematical Biology, 74 (7). 1729–1751. ISSN 0303-6812

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Scornavacca, Celine and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2017) Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. Algorithmica, 77 (1). pp. 173-200. ISSN 0178-4617

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Steel, Mike and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2016) Folding and unfolding phylogenetic trees and networks. Journal of Mathematical Biology, 73 (6). 1761–1780. ISSN 0303-6812

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2016) Transforming phylogenetic networks: Moving beyond tree space. Journal of Theoretical Biology, 404. pp. 30-39. ISSN 0022-5193

Dress, A, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jack, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2016) Characterizing block graphs in terms of their vertex-induced partitions. Australasian Journal of Combinatorics, 66 (1). pp. 1-9. ISSN 1034-4942

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Linz, Simone, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2016) Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations. Journal of Mathematical Biology, 72 (3). pp. 699-725. ISSN 0303-6812

Popescu, Andrei-Alin and Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 (2015) PSIKO2: a fast and versatile tool to infer population stratification on various levels in GWAS. Bioinformatics, 31 (21). pp. 3552-3554. ISSN 1367-4803

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Kettleborough, George (2015) Distinguished minimal topological lassos. SIAM Journal on Discrete Mathematics, 29 (2). 940–961. ISSN 0895-4801

Huber, Vincent T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2015) How much information is needed to infer reticulate evolutionary histories? Systematic Biology, 64 (1). pp. 102-111. ISSN 1063-5157

Kettleborough, George, Dicks, Jo L., Roberts, Ian N. and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2015) Reconstructing (super)trees from data sets with missing distances: Not all is lost. Molecular Biology and Evolution, 32 (6). pp. 1628-1642. ISSN 0737-4038

Popescu, Andrei-Alin, Harper, Andrea, Trick, Martin, Bancroft, Ian and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2014) A novel and fast approach for population structure inference using kernel-PCA and optimization (PSIKO). Genetics, 198 (4). pp. 1421-31. ISSN 1943-2631

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Wu, T. ORCID: https://orcid.org/0000-0002-2663-2001 (2014) Representing partitions on trees. SIAM Journal on Discrete Mathematics, 28 (3). pp. 1152-1172. ISSN 0895-4801

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Steel, Mike (2014) Reconstructing fully-resolved trees from triplet cover distances. Electronic Journal of Combinatorics, 21 (2). ISSN 1077-8926

Dress, Andreas, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Steel, Mike (2014) A matroid associated with a phylogenetic tree. Discrete Mathematics and Theoretical Computer Science, 16 (2). pp. 41-56. ISSN 1365-8050

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica, 66 (3). pp. 714-738. ISSN 0178-4617

Popescu, Andrei-Alin and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2013) Lassoing and corralling rooted phylogenetic trees. Bulletin of Mathematical Biology, 75 (3). pp. 444-465. ISSN 0092-8240

Hellmuth, Marc, Hernandez-Rosales, Maribel, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Stadler, Peter F. and Wieseke, Nicolas (2013) Orthology relations, symbolic ultrametrics and cographs. Journal of Mathematical Biology, 66 (1-2). pp. 399-420.

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Steel, Mike (2012) ‘Lassoing’ a phylogenetic tree I: basic properties, shellings, and covers. Journal of Mathematical Biology, 65 (1). pp. 77-105. ISSN 0303-6812

Gambette, Philippe and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2012) On encodings of phylogenetic networks of bounded level. Journal of Mathematical Biology, 65 (1). pp. 157-180. ISSN 0303-6812

Herrmann, Sven, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2012) Recognizing treelike k-dissimilarities. Journal of Classification, 29 (3). pp. 321-340.

Huber, KT and Moulton, V (2012) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica. (In Press)

Popescu, Andrei-Alin, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Paradis, Emmanuel (2012) ape 3.0: New tools for distance-based phylogenetics and evolutionary analysis in R. Bioinformatics, 28 (11). pp. 1536-1537. ISSN 1367-4803

Dress, A. W. M., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Blocks and cut vertices of the Buneman graph. SIAM Journal on Discrete Mathematics, 25 (4). pp. 1902-1919.

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Spillner, Andreas, Suchecki, Radoslaw and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Metrics on multi-labelled trees: interrelationships and diameter bounds. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (4). pp. 1029-1040. ISSN 1545-5963

Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158, Wagner, Gerd K., Wu, Qiong and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2010) Functional significance may underlie the taxonomic utility of single amino acid substitutions in conserved proteins. Journal of Molecular Evolution, 70 (4). pp. 395-402. ISSN 1432-1432

Byrka, Jaroslaw, Gawrychowski, Pawel, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Kelk, Steven (2010) Worst-case optimal approximation algorithms for maximizing triplet consistency within phylogenetic networks. Journal of Discrete Algorithms, 8 (1). pp. 65-75. ISSN 1570-8667

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2010) An algorithm for computing cutpoints in finite metric spaces. Journal of Classification, 27 (2). pp. 158-172.

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Kelk, Steven and Suchecki, Radosław (2010) A practical algorithm for reconstructing level-1 phylogenetic networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (3). pp. 635-649. ISSN 1557-9964

Lott, Martin, Spillner, Andreas, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Petri, Anna, Oxelman, Bengt and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Inferring polyploid phylogenies from multiply-labeled gene trees. BMC Evolutionary Biology, 9. ISSN 1471-2148

Grünewald, Stefan, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Spillner, Andreas (2009) Characterizing weak compatibility in terms of weighted quartets. Advances in Applied Mathematics, 42 (3). pp. 329-341. ISSN 0196-8858

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) A graph-theoretical invariant of topological spaces. Applied Mathematics Letters, 22 (2). pp. 159-162.

Bordewich, Magnus, Gascuel, Olivier, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 110-117. ISSN 1545-5963

Lott, Martin, Spillner, Andreas, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) PADRE: A Package for Analyzing and Displaying Reticulate Evolution. Bioinformatics, 25 (9). pp. 1199-1200. ISSN 1367-4803

Holland, Barbara R., Benthin, Steffi, Lockhart, Peter J., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2008) Using supernetworks to distinguish hybridization from lineage-sorting. BMC Evolutionary Biology, 8. ISSN 1471-2148

Choe, Y., Koolen, J., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Won, Y. (2008) Counting vertices and cubes in median graphs associated to circular split systems. European Journal of Combinatorics, 29 (2). pp. 443-456.

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Cut points in metric spaces. Applied Mathematics Letters, 21 (6). pp. 545-548.

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Compatible decompositions and block realizations of finite metrics. European Journal of Combinatorics, 29 (7). pp. 1617-1633.

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Block realizations of finite metrics and the tight-span construction I: The embedding theorem. Applied Mathematics Letters (2). pp. 1306-1309.

Grünewald, Stefan, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2008) Encoding phylogenetic trees in terms of weighted quartets. Journal of Mathematical Biology, 56 (4). pp. 465-477. ISSN 0303-6812

Grünewald, Stefan, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Wu, Qiong (2008) Two novel closure rules for constructing phylogenetic super-networks. Bulletin of Mathematical Biology, 70 (7). pp. 1906-1924. ISSN 0092-8240

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2008) Characterizing cell-decomposable metrics. Electronic Journal of Combinatorics, 15 (1). ISSN 1077-8926

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Lott, Martin, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2008) The complexity of deriving multi-labeled trees from bipartitions. Journal of Computational Biology, 15 (6). pp. 639-651. ISSN 1557-8666

Wu, Qiong, James, Steve A., Roberts, Ian N., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T ORCID: https://orcid.org/0000-0002-6368-7511 (2008) Exploring contradictory phylogenetic relationships in yeasts. FEMS Yeast Research, 8 (4). pp. 641-650. ISSN 1567-1364

Brysting, Anne K., Oxelman, Bengt, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Brochmann, Christian (2007) Untangling complex histories of genome mergings in high polyploids. Systematic Biology, 56 (3). pp. 467-476. ISSN 1063-5157

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Some uses of the Farris Transform in mathematics and phylogenetics - A review. Annals of Combinatorics, 11 (1). pp. 1-37. ISSN 0218-0006

Holland, B., Conner, Glenn, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2007) Imputing supertrees and supernetworks from quartets. Systematic Biology, 56 (1). pp. 57-67. ISSN 1063-5157

Huber, K.T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2006) On the structure of the tight-span of a totally split-decomposable metric. European Journal of Combinatorics, 27 (3). pp. 461-479. ISSN 0195-6698

Dress, Andreas, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Lesser, Alice and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2006) Hereditarily optimal realizations of consistent metrics. Annals of Combinatorics, 10 (1). pp. 63-67. ISSN 0218-0006

Grünewald, S. and Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 (2006) A novel insight into the perfect phylogeny problem. Annals of Combinatorics, 10 (1). pp. 97-109. ISSN 0218-0006

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2006) Phylogenetic networks from multi-labelled trees. Journal of Mathematical Biology, 52 (5). pp. 613-632. ISSN 0303-6812

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Oxelman, Bengt, Lott, Martin and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2006) Reconstructing the evolutionary history of polyploids from multilabeled trees. Molecular Biology and Evolution, 23 (9). pp. 1784-1791. ISSN 0737-4038

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The tight span of an antipodal metric space: Part 1 - Combinatorial properties. Discrete Mathematics, 303 (1-3). pp. 65-79. ISSN 0012-365X

Bordewich, Magnus, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Semple, Charles (2005) Identifying phylogenetic trees. Discrete Mathematics, 300 (1-3). pp. 30-43. ISSN 0012-365X

Dress, A., Holland, B., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Weyer-Menkoff, J. (2005) Delta- additive and Delta-ultra-additive maps, Gromov's trees and the Farris transform. Discrete Applied Mathematics, 146 (1). pp. 51-73. ISSN 0166-218X

Holland, B., Huber, K.T. ORCID: https://orcid.org/0000-0002-6368-7511, Penny, D. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The MinMax Squeeze: Guaranteeing a minimal tree for population data. Molecular Biology and Evolution, 22 (2). pp. 235-242. ISSN 0737-4038

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Steel, M. (2005) Recovering a phylogenetic tree using pairwise closure operations. Applied Mathematics Letters, 18 (3). pp. 361-366. ISSN 0893-9659

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2005) Four characters suffice to convexly define a phylogenetic tree. SIAM Journal on Discrete Mathematics, 18 (4). pp. 835-843. ISSN 0895-4801

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2004) Replacing cliques by stars in quasi-median graphs. Discrete Applied Mathematics, 143 (1-3). pp. 194-203. ISSN 0166-218X

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 (2004) Recovering trees from well-separated multi-state characters. Discrete Mathematics, 278 (1-3). pp. 151-164. ISSN 0012-365X

Holland, Barbara R., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Lockhart, Peter J. (2004) Using consensus networks to visualize contradictory evidence for species phylogeny. Molecular Biology and Evolution, 21 (7). pp. 1459-1461. ISSN 0737-4038

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2004) The tight span of an antipodal metric space: Part II - Geometrical properties. Discrete and Computational Geometry, 31 (4). pp. 567-586. ISSN 0179-5376

Cieslik, D., Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2003) Connectivity calculus. Applied Mathematics Letters, 16 (3). pp. 395-399. ISSN 0893-9659

Holland, B. R., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Dress, A. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) δ Plots: A tool for analyzing phylogenetic distance data. Molecular Biology and Evolution, 19 (12). pp. 2041-2059. ISSN 0737-4038

Bandelt, H.-J., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Quasi-median graphs from sets of partitions. Discrete Applied Mathematics, 122 (1-3). pp. 23-35. ISSN 0166-218X

Cieslik, D., Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Embedding complexity and discrete optimization I: A new divide and conquer approach to discrete optimization. Annals of Combinatorics, 6 (3-4). pp. 257-273. ISSN 0218-0006

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) An explicit computation of the injective hull of certain finite metric spaces in terms of their associated Buneman complex. Advances in Mathematics, 168 (1). pp. 1-28. ISSN 0001-8708

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) The relation graph. Discrete Mathematics, 244 (1-3). pp. 153-166. ISSN 0012-365X

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Antipodal metrics and split systems. European Journal of Combinatorics, 23 (2). pp. 187-200. ISSN 0195-6698

Cieslik, D., Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2002) Embedding complexity and discrete optimization II: A dynamical programming approach to the Steiner-Tree Problem. Annals of Combinatorics, 6 (3-4). pp. 275-283. ISSN 0218-0006

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Langton, Michael, Penny, David, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Hendy, Michael (2002) Spectronet: A package for computing spectra and median networks. Applied Bioinformatics, 1 (3). pp. 159-161. ISSN 1175-5636

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2001) Six points suffice: How to check for metric consistency. European Journal of Combinatorics, 22 (4). pp. 465-474. ISSN 0195-6698

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Lockhart, Peter and Dress, Andreas (2001) Pruned median networks: a technique for reducing the complexity of median networks. Molecular Phylogenetics and Evolution, 19 (2). pp. 302-310. ISSN 1055-7903

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Watson, E. E. and Hendy, M. D. (2001) An algorithm for constructing local regions in a phylogenetic network. Molecular Phylogenetics and Evolution, 19 (1). pp. 1-8. ISSN 1055-7903

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2001) Totally split-decomposable metrics of combinatorial dimension two. Annals of Combinatorics, 5 (1). pp. 99-112. ISSN 0218-0006

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2000) Affine maps that induce polyhedral complex isomorphisms. Discrete and Computational Geometry, 24 (1). pp. 49-60. ISSN 0179-5376

Dress, A. W. M., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2000) An exceptional split geometry. Annals of Combinatorics, 4 (1). pp. 1-11. ISSN 0218-0006

Book Section

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Gusfield, Dan (2019) 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). In: 19th International Workshop on Algorithms in Bioinformatics. Schloss Dagstuhl – Leibniz-Zentrum für Informatik GmbH, Dagstuhl Publishing, Saarbrücken/Wadern, Germany., LIPICS. ISBN 978-3-95977-123-8

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2018) Reconstructing the History of Syntenies Through Super-Reconciliation. In: Comparative Genomics. Lecture Notes in Computer Science, 11183 . Springer, pp. 179-195. ISBN 978-3-030-00833-8

Gruenewald, S and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2012) Identifying and defining trees. In: Reconstructing evolution: New Mathematical and computational advances. UNSPECIFIED.

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2012) Network analyses for exploring evolutionary relationships. In: The Phylogenetic Handbook 2nd edition. UNSPECIFIED.

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jack H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) An algorithm for computing virtual cut points in finite metric spaces. In: Combinatorial Optimization and Applications. Lecture Notes in Computer Sciences . Springer. ISBN 978-3-540-73555-7

Dress, Andreas W. M., Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2007) An algorithm for computing virtual cut points in finite metric spaces. In: Combinatorial Optimization and Applications. Lecture Notes in Computing Science, 4616 . Springer Berlin / Heidelberg, pp. 4-10.

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Phylogenetic networks. In: Mathematics of Evolution and Phylogeny. Oxford University Press, pp. 178-200. ISBN 978-0-19-856610-6

Conference or Workshop Item

Jones, Adam, Ponte, Santiago, Iglesias, Isaac, Tonge, Nicola, Williamson, David, Martos, Vera, Orth, Till, Schoenberger, Torsten, Cobas, Carlos, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Kemsley, E. Kate ORCID: https://orcid.org/0000-0003-0669-3883 (2025) Message Passing Neural Networks for Predicting 1H and 19F Chemical Shifts. In: Experimental Nuclear Magnetic Resonance Conference 2025, 2025-04-06 - 2025-04-10, Asilomar Conference Center, Pacific Grove, California.

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, A, Storandt, S and Suchecki, Radoslaw (2012) Computing a consensus of multilabeled trees. In: Meeting on Algorithm Engineering & Experiments (ALENEX12), 2012-01-16 - 2012-01-16.

Hernandez-Rosales, M, Hellmuth, M, Wieseke, N, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Stadler, PF (2012) From event-labeled gene trees to species trees. In: UNSPECIFIED.

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2003) Four characters suffice. In: Formal Power Series and Algebraic Combinatorics, 2003-06-23 - 2003-06-27, Linköping University.

Dress, A., Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2001) Metric spaces in pure and applied mathematics. In: Conference on Quadratic Forms and Related Topics, 2001-03-26 - 2001-03-30.

Book

Dress, A, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, J, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, A (2004) Basic Phylogenetic Combinatorics. Cambridge University Press.

This list was generated on Fri Jul 3 13:26:43 2026 UTC.