Items where Author is "O'Grady, Justin"

Article

Moragues-Solanas, Lluis, Le-Viet, Thanh, McSorley, Elinor, Halford, Carl, Lockhart, Daniel S., Aydin, Alp, Kay, Gemma L., Elumogo, Ngozi, Mullen, William, O'Grady, Justin and Gilmour, Matthew W. (2024) Development and proof-of-concept demonstration of a clinical metagenomics method for the rapid detection of bloodstream infection. BMC Medical Genomics, 17. ISSN 1755-8794

Bloomfield, Samuel J., Zomer, Aldert L., O'Grady, Justin, Kay, Gemma L., Wain, John, Janecko, Nicol, Palau, Raphaëlle and Mather, Alison E. (2023) Determination and quantification of microbial communities and antimicrobial resistance on food through host DNA-depleted metagenomics. Food Microbiology, 110. ISSN 0740-0020

Enne, Virve I., Aydin, Alp, Baldan, Rossella, Owen, Dewi R., Richardson, Hollian, Ricciardi, Federico, Russell, Charlotte, Nomamiukor-Ikeji, Brenda O., Swart, Ann Marie ORCID: https://orcid.org/0000-0002-9359-6995, High, Juliet ORCID: https://orcid.org/0000-0003-2555-2349, Colles, Antony, Barber, Julie A., Gant, Vanya, Livermore, David M. and O'Grady, Justin and INHALE WP1 Study Group (2022) Multicentre evaluation of two multiplex PCR platforms for the rapid microbiological investigation of nosocomial pneumonia in UK ICUs: the INHALE WP1 study. Thorax, 77 (12). pp. 1220-1228. ISSN 0040-6376

Ravi, Anuradha, Troncoso-Rey, Perla, Ahn-Jarvis, Jennifer, Corbin, Kendall R., Harris, Suzanne, Harris, Hannah, Aydin, Alp, Kay, Gemma L., Le Viet, Thanh, Gilroy, Rachel, Pallen, Mark J. ORCID: https://orcid.org/0000-0003-1807-3657, Page, Andrew J., O'Grady, Justin and Warren, Frederick J. (2022) Hybrid metagenome assemblies link carbohydrate structure with function in the human gut microbiome. Communications Biology, 5. ISSN 2399-3642

Hurst, Rachel, Meader, Emma, Gihawi, Abraham ORCID: https://orcid.org/0000-0002-3676-5561, Rallapalli, Ghanasyam, Clark, Jeremy, Kay, Gemma L., Webb, Martyn, Manley, Kate, Curley, Helen, Walker, Helen, Kumar, Ravi, Schmidt, Katarzyna, Crossman, Lisa, Eeles, Rosalind A., Wedge, David C., Lynch, Andy G., Massie, Charlie E., Yazbek-Hanna, Marcelino, Rochester, Mark, Mills, Robert D., Mithen, Richard F., Traka, Maria H., Ball, Richard Y., O'Grady, Justin, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794, Wain, John and Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 (2022) Microbiomes of urine and the prostate are linked to human prostate cancer risk groups. European Urology Oncology, 5 (4). pp. 412-419. ISSN 2588-9311

Alikhan, Nabil-Fareed, Moreno, Luisa Zanolli, Castellanos, Luis Ricardo, Chattaway, Marie Anne, McLauchlin, Jim, Lodge, Martin, O'Grady, Justin, Zamudio, Roxana, Doughty, Emma, Petrovska, Liljana, Cunha, Marcos Paulo Vieira, Knöbl, Terezinha, Moreno, Andrea Micke and Mather, Alison E. (2022) Dynamics of Salmonella enterica and antimicrobial resistance in the Brazilian poultry industry and global impacts on public health. PLoS Genetics, 18 (6). ISSN 1553-7390

Mashe, Tapfumanei, Takawira, Faustinos Tatenda, De Oliveira Martins, Leonardo, Gudza-Mugabe, Muchaneta, Chirenda, Joconiah, Munyanyi, Manes, Chaibva, Blessmore V., Tarupiwa, Andrew, Gumbo, Hlanai, Juru, Agnes, Nyagupe, Charles, Ruhanya, Vurayai, Phiri, Isaac, Manangazira, Portia, Goredema, Alexander, Danda, Sydney, Chabata, Israel, Jonga, Janet, Munharira, Rutendo, Masunda, Kudzai, Mukeredzi, Innocent, Mangwanya, Douglas, Trotter, Alex, Le Viet, Thanh, Rudder, Steven, Kay, Gemma, Baker, David, Thilliez, Gaetan, Gutierrez, Ana Victoria, O'Grady, Justin, Hove, Maxwell, Mutapuri-Zinyowera, Sekesai, Page, Andrew J., Kingsley, Robert A. and Mhlanga, Gibson (2021) Genomic epidemiology and the role of international and regional travel in the SARS-CoV-2 epidemic in Zimbabwe: a retrospective study of routinely collected surveillance data. The Lancet Global Health, 9 (12). e1658-e1666. ISSN 2214-109X

Wilkinson, Eduan, Giovanetti, Marta, Tegally, Houriiyah, San, James E., Lessells, Richard, Cuadros, Diego, Martin, Darren P., Rasmussen, David A., Zekri, Abdel Rahman N., Sangare, Abdoul K., Ouedraogo, Abdoul Salam, Sesay, Abdul K., Priscilla, Abechi, Kemi, Adedotun Sulaiman, Olubusuyi, Adewunmi M., Oluwapelumi, Adeyemi O. O., Hammami, Adnène, Amuri, Adrienne A., Sayed, Ahmad, Ouma, Ahmed E. O., Elargoubi, Aida, Ajayi, Nnennaya A., Victoria, Ajogbasile F., Kazeem, Akano, George, Akpede, Trotter, Alexander J., Yahaya, Ali A., Keita, Alpha K., Diallo, Amadou, Kone, Amadou, Souissi, Amal, Chtourou, Amel, Gutierrez, Ana V., Page, Andrew J., Vinze, Anika, Iranzadeh, Arash, Lambisia, Arnold, Ismail, Arshad, Rosemary, Audu, Sylverken, Augustina, Femi, Ayoade, Ibrahimi, Azeddine, Marycelin, Baba, Oderinde, Bamidele S., Bolajoko, Bankole, Dhaala, Beatrice, Herring, Belinda L., Njanpop-Lafourcade, Berthe Marie, Kleinhans, Bronwyn, McInnis, Bronwyn, Tegomoh, Bryan, Brook, Cara, Pratt, Catherine B., Scheepers, Cathrine, Akoua-Koffi, Chantal G., Agoti, Charles N., Peyrefitte, Christophe, Daubenberger, Claudia, Morang’a, Collins M., Nokes, D. James, Amoako, Daniel G., Bugembe, Daniel L., Park, Danny, Baker, David, Doolabh, Deelan, Ssemwanga, Deogratius, Tshiabuila, Derek, Bassirou, Diarra, Amuzu, Dominic S. Y., Goedhals, Dominique, Omuoyo, Donwilliams O., Maruapula, Dorcas, Foster-Nyarko, Ebenezer, Lusamaki, Eddy K., Simulundu, Edgar, Ong’era, Edidah M., Ngabana, Edith N., Shumba, Edwin, El Fahime, Elmostafa, Lokilo, Emmanuel, Mukantwari, Enatha, Philomena, Eromon, Belarbi, Essia, Simon-Loriere, Etienne, Anoh, Etilé A., Leendertz, Fabian, Ajili, Faida, Enoch, Fakayode O., Wasfi, Fares, Abdelmoula, Fatma, Mosha, Fausta S., Takawira, Faustinos T., Derrar, Fawzi, Bouzid, Feriel, Onikepe, Folarin, Adeola, Fowotade, Muyembe, Francisca M., Tanser, Frank, Dratibi, Fred A., Mbunsu, Gabriel K., Thilliez, Gaetan, Kay, Gemma L., Githinji, George, van Zyl, Gert, Awandare, Gordon A., Schubert, Grit, Maphalala, Gugu P., Ranaivoson, Hafaliana C., Lemriss, Hajar, Anise, Happi, Abe, Haruka, Karray, Hela H., Nansumba, Hellen, Elgahzaly, Hesham A., Gumbo, Hlanai, Smeti, Ibtihel, Ayed, Ikhlas B., Odia, Ikponmwosa, Boubaker, Ilhem Boutiba Ben, Gaaloul, Imed, Gazy, Inbal, Mudau, Innocent, Ssewanyana, Isaac, Konstantinus, Iyaloo, Lekana-Douk, Jean B., Makangara, Jean Claude C., Tamfum, Jean Jacques M., Heraud, Jean Michel, Shaffer, Jeffrey G., Giandhari, Jennifer, Li, Jingjing, Yasuda, Jiro, Mends, Joana Q., Kiconco, Jocelyn, Morobe, John M., Gyapong, John O., Okolie, Johnson C., Kayiwa, John T., Edwards, Johnathan A., Gyamfi, Jones, Farah, Jouali, Nakaseegu, Joweria, Ngoi, Joyce M., Namulondo, Joyce, Andeko, Julia C., Lutwama, Julius J., O’Grady, Justin, Siddle, Katherine, Adeyemi, Kayode T., Tumedi, Kefentse A., Said, Khadija M., Hae-Young, Kim, Duedu, Kwabena O., Belyamani, Lahcen, Fki-Berrajah, Lamia, Singh, Lavanya, Martins, Leonardo de O., Tyers, Lynn, Ramuth, Magalutcheemee, Mastouri, Maha, Aouni, Mahjoub, el Hefnawi, Mahmoud, Matsheka, Maitshwarelo I., Kebabonye, Malebogo, Diop, Mamadou, Turki, Manel, Paye, Marietou, Nyaga, Martin M., Mareka, Mathabo, Damaris, Matoke Muhia, Mburu, Maureen W., Mpina, Maximillian, Nwando, Mba, Owusu, Michael, Wiley, Michael R., Youtchou, Mirabeau T., Ayekaba, Mitoha O., Abouelhoda, Mohamed, Seadawy, Mohamed G., Khalifa, Mohamed K., Sekhele, Mooko, Ouadghiri, Mouna, Diagne, Moussa M., Mwenda, Mulenga, Allam, Mushal, Phan, My V.T., Abid, Nabil, Touil, Nadia, Rujeni, Nadine, Kharrat, Najla, Ismael, Nalia, Dia, Ndongo, Mabunda, Nedio, Hsiao, Nei Yuan, Silochi, Nelson B., Nsenga, Ngoy, Gumede, Nicksy, Mulder, Nicola, Ndodo, Nnaemeka, Razanajatovo, Norosoa H., Iguosadolo, Nosamiefan, Judith, Oguzie, Kingsley, Ojide C., Sylvanus, Okogbenin, Peter, Okokhere, Femi, Oladiji, Idowu, Olawoye, Testimony, Olumade, Chukwuma, Omoruyi E., Ogah, Onwe E., Onwuamah, Chika K., Cyril, Oshomah, Faye, Ousmane, Tomori, Oyewale, Ondoa, Pascale, Combe, Patrice, Semanda, Patrick, Oluniyi, Paul E., Arnaldo, Paulo, Quashie, Peter K., Dussart, Philippe, Bester, Phillip A., Mbala, Placide K., Ayivor-Djanie, Reuben, Njouom, Richard, Phillips, Richard O., Gorman, Richmond, Kingsley, Robert A. ORCID: https://orcid.org/0000-0002-0194-6485, Carr, Rosina A.A., El Kabbaj, Saâd, Gargouri, Saba, Masmoudi, Saber, Sankhe, Safietou, Lawal, Salako B., Kassim, Samar, Trabelsi, Sameh, Metha, Samar, Kammoun, Sami, Lemriss, Sanaâ, Agwa, Sara H.A., Calvignac-Spencer, Sébastien, Schaffner, Stephen F., Doumbia, Seydou, Mandanda, Sheila M., Aryeetey, Sherihane, Ahmed, Shymaa S., Elhamoumi, Siham, Andriamandimby, Soafy, Tope, Sobajo, Lekana-Douki, Sonia, Prosolek, Sophie, Ouangraoua, Soumeya, Mundeke, Steve A., Rudder, Steven, Panji, Sumir, Pillay, Sureshnee, Engelbrecht, Susan, Nabadda, Susan, Behillil, Sylvie, Budiaki, Sylvie L., van der Werf, Sylvie, Mashe, Tapfumanei, Aanniz, Tarik, Mohale, Thabo, Le-Viet, Thanh, Schindler, Tobias, Anyaneji, Ugochukwu J., Chinedu, Ugwu, Ramphal, Upasana, Jessica, Uwanibe, George, Uwem, Fonseca, Vagner, Enouf, Vincent, Gorova, Vivianne, Roshdy, Wael H., Ampofo, William K., Preiser, Wolfgang, Choga, Wonderful T., Bediako, Yaw, Naidoo, Yeshnee, Butera, Yvan, de Laurent, Zaydah R., Sall, Amadou A., Rebai, Ahmed, von Gottberg, Anne, Kouriba, Bourema, Williamson, Carolyn, Bridges, Daniel J., Chikwe, Ihekweazu, Bhiman, Jinal N., Mine, Madisa, Cotten, Matthew, Moyo, Sikhulile, Gaseitsiwe, Simani, Saasa, Ngonda, Sabeti, Pardis C., Kaleebu, Pontiano, Tebeje, Yenew K., Tessema, Sofonias K., Happi, Christian, Nkengasong, John and de Oliveira, Tulio (2021) A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa. Science, 374 (6566). pp. 423-431. ISSN 0036-8075

Mu, Shengrui, Hu, Long, Zhang, Ye, Liu, Yingmei, Cui, Xiaojing, Zou, Xiaohui, Wang, Yeming, Lu, Binghuai, Zhou, Shuilian, Liang, Xiaoxue, Liang, Chen, Xiao, Nick, O’Grady, Justin, Lee, Shela and Cao, Bin (2021) Prospective evaluation of a rapid clinical metagenomics test for bacterial pneumonia. Frontiers in Cellular and Infection Microbiology, 11. ISSN 2235-2988

High, Juliet ORCID: https://orcid.org/0000-0003-2555-2349, Enne, Virve I., Barber, Julie A., Brealey, David, Turner, David A. ORCID: https://orcid.org/0000-0002-1689-4147, Horne, Robert, Peters, Mark, Dhesi, Zaneeta, Wagner, Adam P. ORCID: https://orcid.org/0000-0002-9101-3477, Pandolfo, Alyssa M., Stirling, Sue, Russell, Charlotte, O’Grady, Justin, Swart, Ann Marie ORCID: https://orcid.org/0000-0002-9359-6995, Gant, Vanya and Livermore, David M. ORCID: https://orcid.org/0000-0002-9856-3703 (2021) INHALE: the impact of using FilmArray Pneumonia Panel molecular diagnostics for hospital-acquired and ventilator-associated pneumonia on antimicrobial stewardship and patient outcomes in UK Critical Care—study protocol for a multicentre randomised controlled trial. Trials, 22 (1). ISSN 1745-6215

Page, Andrew J., Mather, Alison E., Le-Viet, Thanh, Meader, Emma J., Alikhan, Nabil-Fareed, Kay, Gemma L., De Oliveira Martins, Leonardo, Aydin, Alp, Baker, David J., Trotter, Alexander J., Rudder, Steven, Tedim, Ana P., Kolyva, Anastasia, Stanley, Rachael, Yasir, Muhammad, Diaz, Maria, Potter, Will, Stuart, Claire, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Thomson, Nicholas M., Adriaenssens, Evelien M., Swingler, Tracey, Gilroy, Rachel A. J., Griffith, Luke, Sethi, Dheeraj K., Aggarwal, Dinesh, Brown, Colin S., Davidson, Rose K. ORCID: https://orcid.org/0000-0002-6624-4011, Kingsley, Robert A., Bedford, Luke, Coupland, Lindsay J., Charles, Ian G., Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Webber, Mark A., Smith, S. J. Louise, Chand, Meera, Dervisevic, Samir and O’Grady, Justin (2021) Large-scale sequencing of SARS-CoV-2 genomes from one region allows detailed epidemiology and enables local outbreak management. Microbial Genomics, 7 (6). ISSN 2057-5858

Pandolfo, Alyssa M., Horne, Robert, Jani, Yogini, Reader, Tom W., Bidad, Natalie, Brealey, David, Enne, Virve I., Livermore, David M. ORCID: https://orcid.org/0000-0002-9856-3703, Gant, Vanya, Brett, Stephen J., Barber, Julie, Shallcross, Laura, Cuesta, Jeronimo, Peters, Mark, Klein, Nigel, Moondi, Parvez, O’Grady, Justin, High, Juliet ORCID: https://orcid.org/0000-0003-2555-2349, Russell, Charlotte, Swart, Ann Marie ORCID: https://orcid.org/0000-0002-9359-6995, Turner, David ORCID: https://orcid.org/0000-0002-1689-4147 and Singh, Suveer (2021) Intensivists’ beliefs about rapid multiplex molecular diagnostic testing and its potential role in improving prescribing decisions and antimicrobial stewardship: a qualitative study. Antimicrobial Resistance & Infection Control, 10 (1). ISSN 2047-2994

O’Sullivan, Denise M., Doyle, Ronan M., Temisak, Sasithon, Redshaw, Nicholas, Whale, Alexandra S., Logan, Grace, Huang, Jiabin, Fischer, Nicole, Amos, Gregory C. A., Preston, Mark D., Marchesi, Julian R., Wagner, Josef, Parkhill, Julian, Motro, Yair, Denise, Hubert, Finn, Robert D., Harris, Kathryn A., Kay, Gemma L., O’Grady, Justin, Ransom-Jones, Emma, Wu, Huihai, Laing, Emma, Studholme, David J., Benavente, Ernest Diez, Phelan, Jody, Clark, Taane G., Moran-Gilad, Jacob and Huggett, Jim F. (2021) An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities. Scientific Reports, 11. ISSN 2045-2322

Mashe, Tapfumanei, Takawira, Faustinos Tatenda, Gumbo, Hlanai, Juru, Agnes, Nyagupe, Charles, Maeka, Kenneth K., Mtapuri-Zinyowera, Sekesai, Gudza-Mugabe, Muchaneta, de Oliveira Martins, Leonardo, O'Grady, Justin, Kingsley, Robert A. ORCID: https://orcid.org/0000-0002-0194-6485, Page, Andrew J. and Simbi, Raiva (2021) Surveillance of SARS-CoV-2 in Zimbabwe shows dominance of variants of concern. The Lancet Microbe, 2 (5). ISSN 2666-5247

Moragues-Solanas, Lluís, Scotti, Riccardo and O'Grady, Justin (2021) Rapid metagenomics for diagnosis of bloodstream and respiratory tract nosocomial infections: current status and future prospects. Expert Review of Molecular Diagnostics, 21 (4). pp. 371-380. ISSN 1473-7159

Baker, Dave J., Aydin, Alp, Le Viet, Thanh, Kay, Gemma L., Rudder, Steven, de Oliveira Martins, Leonardo, Tedim, Ana P., Kolyva, Anastasia, Diaz, Maria, Alikhan, Nabil-Fareed, Meadows, Lizzie, Bell, Andrew, Gutierrez, Ana Victoria, Trotter, Alexander J., Thomson, Nicholas M., Gilroy, Rachel, Griffith, Luke, Adriaenssens, Evelien M., Stanley, Rachael, Charles, Ian, Franslem-Elumogo, Ngozi, Wain, John, Prakash, Reenesh, Meader, Emma, Mather, Alison, Webber, Mark, Dervisevic, Samir, Page, Andrew J. and O'Grady, Justin (2021) CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes. Genome Medicine, 13. ISSN 1756-994X

Foster-Nyarko, Ebenezer, Alikhan, Nabil-Fareed, Ikumapayi, Usman N, Sarwar, Golam, Okoi, Catherine, Tientcheu, Peggy-Estelle Maguiagueu, Defernez, Marianne, O'Grady, Justin, Antonio, Martin and Pallen, Mark J ORCID: https://orcid.org/0000-0003-1807-3657 (2021) Genomic diversity of Escherichia coli from healthy children in rural Gambia. PeerJ, 9. ISSN 2167-8359

Foster-Nyarko, Ebenezer, Alikhan, Nabil-Fareed, Ravi, Anuradha, Thomson, Nicholas M., Jarju, Sheikh, Kwambana-Adams, Brenda A., Secka, Arss, O'Grady, Justin, Antonio, Martin and Pallen, Mark John ORCID: https://orcid.org/0000-0003-1807-3657 (2021) Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia. Microbial Genomics, 7 (1). ISSN 2057-5858

Foster-Nyarko, Ebenezer, Alikhan, Nabil-Fareed, Ravi, Anuradha, Thilliez, Gaëtan, Thomson, Nicholas M, Baker, David, Kay, Gemma, Cramer, Jennifer D, O'Grady, Justin, Antonio, Martin and Pallen, Mark J ORCID: https://orcid.org/0000-0003-1807-3657 (2020) Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia. Microbial Genomics, 6 (9). ISSN 2057-5858

Baker, Dave J., Kay, Gemma L., Aydin, Alp, Le-Viet, Thanh, Rudder, Steven, Tedim, Ana P., Kolyva, Anastasia, Diaz, Maria, de Oliveira Martins, Leonardo, Alikhan, Nabil-Fareed, Meadows, Lizzie, Bell, Andrew, Gurierrez, Ana Victoria, Trotter, Alexander J., Thomson, Nicholas M., Gilroy, Rachel, Griffith, Luke, Adriaenssens, Evelien M., Stanley, Rachael, Charles, Ian G., Elumogo, Nzogi, Wain, John, Prakash, Reenesh, Meader, Emma, Mather, Alison E., Webber, Mark A., Dervisevic, Samir, Page, Andrew J. and O'Grady, Justin (2020) CoronaHiT: High throughput sequencing of SARS-CoV-2 genomes.

Dhesi, Zaneeta, Enne, Virve I, O'Grady, Justin, Gant, Vanya and Livermore, David M. ORCID: https://orcid.org/0000-0002-9856-3703 (2020) Rapid and point-of-care testing in respiratory tract infections: An antibiotic guardian? ACS Pharmacology & Translational Science, 3 (3). pp. 401-417. ISSN 2575-9108

Reddington, Kate, Eccles, David, O'Grady, Justin, Drown, Devin M., Hansen, Lars Hestbjerg, Nielsen, Tue Kjærgaard, Ducluzeau, Anne-Lise, Leggett, Richard M., Heavens, Darren, Peel, Ned, Snutch, Terrance P., Bayega, Anthony, Oikonomopoulos, Spyridon, Ragoussis, Ioannis, Barry, Thomas, van der Helm, Eric, Jolic, Dino, Richardson, Hollian, Jansen, Hans, Tyson, John R., Jain, Miten and Brown, Bonnie L. (2020) Metagenomic analysis of planktonic riverine microbial consortia using nanopore sequencing reveals insight into river microbe taxonomy and function. GigaScience, 9 (6). ISSN 2047-217X

Trotter, Alexander J., Dean, Rachael, Whitehouse, Celia E., Mikalsen, Jarle, Hill, Claire, Brunton-Sim, Roxanne, Kay, Gemma L., Shakokani, Majeed, Durst, Alexander Z. E., Wain, John, Mcnamara, Iain and O’Grady, Justin (2020) Preliminary evaluation of a rapid lateral flow calprotectin test for the diagnosis of prosthetic joint infection. Bone and Joint Research, 9 (5). pp. 202-210. ISSN 2046-3758

Cox, Michael J., Loman, Nicholas, Bogaert, Debby and O'Grady, Justin (2020) Co-infections: potentially lethal and unexplored in COVID-19. The Lancet Microbe, 1 (1). ISSN 2666-5247

Brinda, Karel, Callendrello, Alanna, Ma, Kevin C., MacFadden, Derek R., Charalampous, Themoula, Lee, Robyn S., Cowley, Lauren, Wadsworth, Christa B., Grad, Yonatan H., Kucherov, Gregory, O'Grady, Justin, Baym, Michael and Hanage, William P. (2020) Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing. Nature Microbiology, 5 (3). pp. 455-464. ISSN 2058-5276

Street, Teresa L., Barker, Leanne, Sanderson, Nicholas D., Kavanagh, James, Hoosdally, Sarah, Cole, Kevin, Newnham, Robert, Selvaratnam, Mathyruban, Andersson, Monique, Llewelyn, Martin J., O'Grady, Justin, Crook, Derrick W. and Eyre, David W. (2020) Optimizing DNA extraction methods for nanopore sequencing of Neisseria gonorrhoeae directly from urine samples. Journal of Clinical Microbiology, 58 (3). ISSN 0095-1137

Yang, Libing, Haidar, Ghady, Zia, Haris, Nettles, Rachel, Qin, Shulin, Wang, Xiaohong, Shah, Faraaz, Rapport, Sarah F, Charalampous, Themoula, Methé, Barbara, Fitch, Adam, Morris, Alison, McVerry, Bryan J, O'Grady, Justin and Kitsios, Georgios D (2019) Metagenomic identification of severe pneumonia pathogens in mechanically-ventilated patients:a feasibility and clinical validity study. Respiratory Research, 20 (1). p. 265. ISSN 1465-9921

Trotter, Alexander J., Aydin, Alp, Strinden, Michael J. and O'Grady, Justin (2019) Recent and emerging technologies for the rapid diagnosis of infection and antimicrobial resistance. Current Opinion in Microbiology, 51. pp. 39-45. ISSN 1369-5274

Charalampous, Themoula, Kay, Gemma, Richardson, Hollian, Aydin, Alp, Baldan, Rossella, Jeanes, Christopher, Rae, Duncan, Grundy, Sara, Turner, Daniel J., Wain, John, Leggett, Richard M., Livermore, David ORCID: https://orcid.org/0000-0002-9856-3703 and O'Grady, Justin (2019) Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection. Nature Biotechnology, 37. 783–792. ISSN 1087-0156

Phelan, Jody E., O'Sullivan, Denise M., Machado, Diana, Ramos, Jorge, Oppong, Yaa E. A., Campino, Susana, O'Grady, Justin, McNerney, Ruth, Hibberd, Martin L., Viveiros, Miguel, Huggett, Jim F. and Clark, Taane G. (2019) Integrating informatics tools and portable sequencing technology for rapid detection of resistance to anti-tuberculous drugs. Genome Medicine, 11. ISSN 1756-994X

Schmidt, K., Stanley, K. K., Hale, R., Smith, L., Wain, J., O'Grady, J. and Livermore, D. M. ORCID: https://orcid.org/0000-0002-9856-3703 (2019) Evaluation of multiplex tandem PCR (MT-PCR) assays for the detection of bacterial resistance genes among Enterobacteriaceae in clinical urines. Journal of Antimicrobial Chemotherapy, 74 (2). 349–356. ISSN 0305-7453

O’Grady, Justin (2019) A powerful, non-invasive test to rule out infection. Nature Microbiology, 4 (4). pp. 554-555. ISSN 2058-5276

Taylor, G. Michael, Murphy, Eileen M., Mendum, Tom A., Pike, Alistair W.G., Linscott, Bethan, Wu, Huihai, O’Grady, Justin, Richardson, Hollian, O’Donovan, Edmond, Troy, Carmelita and Stewart, Graham R. (2018) Leprosy at the edge of Europe—Biomolecular, isotopic and osteoarchaeological findings from medieval Ireland. PLoS One, 13 (12). ISSN 1932-6203

Jain, Miten, Koren, Sergey, Miga, Karen H., Quick, Josh, Rand, Arthur C., Sasani, Thomas A., Tyson, John R., Beggs, Andrew D., Dilthey, Alexander T., Fiddes, Ian T., Malla, Sunir, Marriott, Hannah, Nieto, Tom, O'Grady, Justin, Olson, Hugh E., Pedersen, Brent S., Rhie, Arang, Richardson, Hollian, Quinlan, Aaron R., Snutch, Terrance P., Tee, Louise, Paten, Benedict, Phillippy, Adam M., Simpson, Jared T., Loman, Nicholas J. and Loose, Matthew (2018) Nanopore sequencing and assembly of a human genome with ultra-long reads. Nature Biotechnology, 36. 338–345. ISSN 1087-0156

Angers-Loustau, Alexandre, Petrillo, Mauro, Bengtsson-Palme, Johan, Berendonk, Thomas, Blais, Burton, Chan, Kok-Gan, Coque, Teresa M, Hammer, Paul, Heß, Stefanie, Kagkli, Dafni M, Krumbiegel, Carsten, Lanza, Val F, Madec, Jean-Yves, Naas, Thierry, O'Grady, Justin, Paracchini, Valentina, Rossen, John W A, Ruppé, Etienne, Vamathevan, Jessica, Venturi, Vittorio and Van den Eede, Guy (2018) The challenges of designing a benchmark strategy for bioinformatics pipelines in the identification of antimicrobial resistance determinants using next generation sequencing technologies. F1000Research, 7. ISSN 2046-1402

Charalampous, Themoula, Richardson, Hollian, Kay, Gemma, Baldan, Rossella, Jeanes, Christopher, Turner, Daniel, Wain, John, Livermore, David ORCID: https://orcid.org/0000-0002-9856-3703, Leggett, Richard and O'Grady, Justin (2018) Diagnosis of lower respiratory tract infections using nanopore sequencing. European Respiratory Journal, 52 (Suppl.). ISSN 0903-1936

Burnham, Carey-Ann D, Leeds, Jennifer, Nordmann, Patrice, O'Grady, Justin and Patel, Jean (2017) Diagnosing antimicrobial resistance. Nature Reviews Microbiology, 15 (11). pp. 697-703. ISSN 1740-1526

Ozongwu, C., Personne, Y., Platt, G., Jeanes, C., Aydin, S., Kozato, N., Gant, V., O'Grady, J. and Enne, V.I. (2017) The Unyvero P55 ‘sample-in, answer-out’ pneumonia assay: A performance evaluation. Biomolecular Detection and Quantification, 13. pp. 1-6. ISSN 2214-7535

Polepole, Pascal, Kabwe, Mwila, Kasonde, Mpanga, Tembo, John, Shibemba, Aaron, O'Grady, Justin, Kapata, Nathan, Zumla, Alimuddin and Bates, Matthew (2017) Performance of the Xpert MTB/RIF assay in the diagnosis of tuberculosis in formalin-fixed, paraffin-embedded tissues. International Journal of Mycobacteriology, 6 (1). pp. 87-93. ISSN 2212-5531

Schmidt, K., Mwaigwisya, S., Crossman, L. C., Doumith, M., Munroe, D., Pires, C., Khan, A. M., Woodford, N., Saunders, N. J., Wain, J., O'Grady, J. and Livermore, D. M. ORCID: https://orcid.org/0000-0002-9856-3703 (2017) Identification of bacterial pathogens and antimicrobial resistance directly from clinical urines by nanopore-based metagenomic sequencing. Journal of Antimicrobial Chemotherapy, 72 (1). pp. 104-114. ISSN 0305-7453

Phelan, Jody, O’Sullivan, Denise M., Machado, Diana, Ramos, Jorge, Whale, Alexandra S., O'Grady, Justin, Dheda, Keertan, Campino, Susana, McNerney, Ruth, Viveiros, Miguel, Huggett, Jim F. and Clark, Taane G. (2016) The variability and reproducibility of whole genome sequencing technology for detecting resistance to anti-tuberculous drugs. Genome Medicine, 8.

Bates, Matthew, Polepole, Pascal, Kapata, Nathan, Loose, Matt and O'Grady, Justin (2016) Application of highly portable MinION nanopore sequencing technology for the monitoring of nosocomial tuberculosis infection. International Journal of Mycobacteriology, 5 Suppl 1. S24. ISSN 2212-5531

Jeanes, Christopher and O'Grady, Justin (2016) Diagnosing tuberculosis in the 21st century – Dawn of a genomics revolution? International Journal of Mycobacteriology, 5 (4). pp. 384-391. ISSN 2212-5531

Ip, Camilla L. C., Loose, Matthew, Tyson, John R., de Cesare, Mariateresa, Brown, Bonnie L., Jain, Miten, Leggett, Richard M., Eccles, David A., Zalunin, Vadim, Urban, John M., Piazza, Paolo, Bowden, Rory J., Paten, Benedict, Mwaigwisya, Solomon, Batty, Elizabeth M., Simpson, Jared T., Snutch, Terrance P., Birney, Ewan, Buck, David, Goodwin, Sara, Jansen, Hans J., O'Grady, Justin and Olsen, Hugh E. (2015) MinION Analysis and Reference Consortium: Phase 1 data release and analysis. F1000Research, 4 (1075). ISSN 2046-1402

Donoghue, Helen D, Spigelman, Mark, O'Grady, Justin, Szikossy, Ildikó, Pap, Ildikó, Lee, Oona Y-C, Wu, Houdini H T, Besra, Gurdyal S and Minnikin, David E (2015) Ancient DNA analysis - An established technique in charting the evolution of tuberculosis and leprosy. Tuberculosis, 95 (1). S140-S144. ISSN 1873-281X

Mwaigwisya, Solomon, Assiri, Rasha Assad M and O'Grady, Justin (2015) Emerging commercial molecular tests for the diagnosis of bloodstream infection. Expert Review of Molecular Diagnostics, 15 (5). pp. 681-692. ISSN 1744-8352

Donoghue, Helen D, Michael Taylor, G, Marcsik, Antónia, Molnár, Erika, Pálfi, Gyorgy, Pap, Ildikó, Teschler-Nicola, Maria, Pinhasi, Ron, Erdal, Yilmaz S, Velemínsky, Petr, Likovsky, Jakub, Belcastro, Maria Giovanna, Mariotti, Valentina, Riga, Alessandro, Rubini, Mauro, Zaio, Paola, Besra, Gurdyal S, Lee, Oona Y-C, Wu, Houdini H T, Minnikin, David E, Bull, Ian D, O'Grady, Justin and Spigelman, Mark (2015) A migration-driven model for the historical spread of leprosy in medieval Eastern and Central Europe. Infection, Genetics and Evolution, 31. pp. 250-256. ISSN 1567-7257

O'Grady, Justin, Kik, Sandra V. and Ferrara, Giovanni (2015) Extra-pulmonary tuberculosis and Xpert® MTB/RIF: All about meta-analyses? International Journal of Tuberculosis and Lung Disease, 19 (3). p. 254. ISSN 1027-3719

Ashton, Philip, Nair, Satheesh, Dallman, Tim, Rubino, Salvatore, Rabsch, Wolfgang, Mwaigwisya, Solomon, Wain, John and O'Grady, Justin (2015) MinION nanopore sequencing identifies the position and structure of a bacterial antibiotic resistance island. Nature Biotechnology, 33 (3). 296–300. ISSN 1546-1696

Huggett, Jim, O'Grady, Justin and Bustin, Stephen (2015) qPCR, dPCR, NGS – A journey. Biomolecular Detection and Quantification, 3. A1-A5. ISSN 2214-7535

Kroidl, Inge, Clowes, Petra, Reither, Klaus, Mtafya, Bariki, Rojas-Ponce, Gabriel, Ntinginya, Elias N., Kalomo, Mariam, Minja, Lilian T., Kowuor, Dickens, Saathoff, Elmar, Kroidl, Arne, Heinrich, Norbert, Maboko, Leonard, Bates, Matthew, O'Grady, Justin, Zumla, Alimuddin, Hoelscher, Michael and Rachow, Andrea (2015) Performance of urine lipoarabinomannan assays for paediatric tuberculosis in Tanzania. European Respiratory Journal, 46 (3). pp. 761-770. ISSN 0903-1936

Huggett, Jim, O'Grady, Justin and Bustin, Stephen (2014) How to make Mathematics Biology's next and better microscope. Biomolecular Detection and Quantification, 1 (1). A1-A3. ISSN 2214-7535

Bates, Matthew, Ahmed, Yusuf, Chilukutu, Lophina, Tembo, John, Cheelo, Busiku, Sinyangwe, Sylvester, Kapata, Nathan, Maeurer, Markus, O'Grady, Justin, Mwaba, Peter and Zumla, Alimuddin (2013) Use of the Xpert MTB/RIF assay for diagnosing pulmonary tuberculosis comorbidity and multidrug-resistant TB in obstetrics and gynaecology inpatient wards at the University Teaching Hospital, Lusaka, Zambia. Tropical Medicine & International Health, 18 (9). pp. 1134-40. ISSN 1365-3156

Gómez, Diego, McGuinness, Sheila, Reddington, Kate, O'Grady, Justin, Yangüela, Javier and Barry, Thomas (2013) Evaluation of a novel Listeria enrichment broth combined with a real-time PCR diagnostics assay for the specific detection of Listeria monocytogenes in RTE pork products. International Journal of Food Science & Technology, 48 (5). pp. 1103-1108. ISSN 1365-2621

Reddington, Kate, Tuite, Nina, Barry, Thomas, O'Grady, Justin and Zumla, Alimuddin (2013) Advances in multiparametric molecular diagnostics technologies for respiratory tract infections. Current Opinion in Pulmonary Medicine, 19 (3). pp. 298-304. ISSN 1070-5287

Bates, Matthew, O'Grady, Justin, Maeurer, Markus, Tembo, John, Chilukutu, Lophina, Chabala, Chishala, Kasonde, Richard, Mulota, Peter, Mzyece, Judith, Chomba, Mumba, Mukonda, Lukundo, Mumba, Maxwell, Kapata, Nathan, Rachow, Andrea, Clowes, Petra, Hoelscher, Michael, Mwaba, Peter and Zumla, Alimuddin (2013) Assessment of the Xpert MTB/RIF assay for diagnosis of tuberculosis with gastric lavage aspirates in children in sub-Saharan Africa: A prospective descriptive study. The Lancet Infectious Diseases, 13 (1). pp. 36-42. ISSN 1474-4457

Kapata, Nathan, Chanda-Kapata, Pascalina, O'Grady, Justin, Bates, Matthew, Mwaba, Peter, Janssen, Saskia, Marais, Ben, Cobelens, Frank, Grobusch, Martin and Zumla, Alimuddin (2013) Trends in childhood tuberculosis in Zambia: A situation analysis. Journal of Tropical Pediatrics, 59 (2). pp. 134-139. ISSN 1465-3664

O'Grady, Justin, Bates, Matthew, Chilukutu, Lophina, Mzyece, Judith, Cheelo, Busiku, Chilufya, Moses, Mukonda, Lukundo, Mumba, Maxwell, Tembo, John, Chomba, Mumba, Kapata, Nathan, Maeurer, Markus, Rachow, Andrea, Clowes, Petra, Hoelscher, Michael, Mwaba, Peter and Zumla, Alimuddin (2012) Evaluation of the Xpert MTB/RIF assay at a tertiary care referral hospital in a setting where tuberculosis and HIV infection are highly endemic. Clinical Infectious Diseases, 55 (9). pp. 1171-1178. ISSN 1058-4838

Bates, Matthew, O'Grady, Justin, Mwaba, Peter, Chilukutu, Lophina, Mzyece, Judith, Cheelo, Busiku, Chilufya, Moses, Mukonda, Lukundo, Mumba, Maxwell, Tembo, John, Chomba, Mumba, Kapata, Nathan, Rachow, Andrea, Clowes, Petra, Maeurer, Markus, Hoelscher, Michael and Zumla, Alimuddin (2012) Evaluation of the burden of unsuspected pulmonary tuberculosis and co-morbidity with non-communicable diseases in sputum producing adult inpatients. PLoS One, 7 (7). ISSN 1932-6203

Abouzeid, Mohammad S., Zumla, Alimuddin I., Felemban, Shaza, Alotaibi, Badriah, O'Grady, Justin and Memish, Ziad A. (2012) Tuberculosis trends in Saudis and non-Saudis in the Kingdom of Saudi Arabia – A 10 year retrospective study (2000–2009). PLoS One, 7 (6). ISSN 1932-6203

Bates, Matthew, O'Grady, Justin, Mudenda, Victor, Shibemba, Aaron and Zumla, Alimuddin (2012) New Global Estimates of Malaria Deaths. The Lancet, 380 (9841). pp. 560-561. ISSN 1474-547X

Cummings, Ian, O'Grady, Justin, Pai, Vasudev, Kolvekar, Shyam and Zumla, Alimuddin (2012) Surgery and Tuberculosis. Current Opinion in Pulmonary Medicine, 18 (3). pp. 241-245. ISSN 1070-5287

Iademarco, Michael F., O'Grady, Justin and Lönnroth, Knut (2012) Chest radiography for tuberculosis screening is back on the agenda. International Journal of Tuberculosis and Lung Disease, 16 (11). pp. 1421-1422. ISSN 1815-7920

Kapata, N, Chanda-Kapata, P, Grobusch, MP, O'Grady, J, Schwank, S, Bates, M, Jansenn, S, Mwinga, A, Cobelens, F, Mwaba, P and Zumla, A (2012) Scale-up of TB and HIV Programme Collaborative Activities in Zambia - a 10-year Review. Tropical Medicine & International Health, 17 (6). pp. 760-766. ISSN 1365-3156

Kapata, Nathan, Chanda-Kapata, Pascalina, Grobusch, Martin Peter, O'Grady, Justin, Bates, Matthew, Mwaba, Peter and Zumla, Alimuddin (2012) Leprosy Trends in Zambia 1991-2009. Tropical Medicine & International Health, 17 (10). pp. 1289-1293. ISSN 1365-3156

McGuinness, Sheila, Barry, Thomas and O'Grady, Justin (2012) Development and preliminary validation of a real-time RT-PCR based method targeting tmRNA for the rapid and specific detection of Salmonella. Food Research International, 45 (2). pp. 989-992. ISSN 1873-7145

McNerney, Ruth, Maeurer, Markus, Abubakar, Ibrahim, Marais, Ben, Mchugh, Timothy D., Ford, Nathan, Weyer, Karin, Lawn, Steve, Grobusch, Martin P., Memish, Ziad, Squire, S. Bertel, Pantaleo, Giuseppe, Chakaya, Jeremiah, Casenghi, Martina, Migliori, Giovanni-Batista, Mwaba, Peter, Zijenah, Lynn, Hoelscher, Michael, Cox, Helen, Swaminathan, Soumya, Kim, Peter S., Schito, Marco, Harari, Alexandre, Bates, Matthew, Schwank, Samana, O'Grady, Justin, Pletschette, Michel, Ditui, Lucica, Atun, Rifat and Zumla, Alimuddin (2012) Tuberculosis diagnostics and biomarkers: needs, challenges, recent advances, and opportunities. Journal of Infectious Diseases, 205 (suppl 2). S147-S158. ISSN 0022-1899

Mudenda, Victor, Lucas, Sebastian, Shibemba, Aaron, O'Grady, Justin, Bates, Matthew, Kapata, Nathan, Schwank, Samana, Mwaba, Peter, Atun, Rifat, Hoelscher, Michael, Maeurer, Markus and Zumla, Alimuddin (2012) Tuberculosis and tuberculosis/HIV/AIDS-associated mortality in Africa: The urgent need to expand and invest in routine and research autopsies. Journal of Infectious Diseases, 205 (suppl 2). S340-S346. ISSN 0022-1899

Reddington, Kate, Zumla, Alimuddin, Bates, Matthew, van Soolingen, Dick, Niemann, Stefan, Barry, Thomas and O'Grady, Justin (2012) SeekTB, a two-stage multiplex real-time-PCR-based method for differentiation of the Mycobacterium tuberculosis complex. Journal of Clinical Microbiology, 50 (7). pp. 2203-2206. ISSN 0095-1137

Zumla, Alimuddin, Abubakar, Ibrahim, Raviglione, Mario, Hoelscher, Michael, Ditiu, Lucica, McHugh, Timothy D., Squire, S. Bertel, Cox, Helen, Ford, Nathan, McNerney, Ruth, Marais, Ben, Grobusch, Martin, Lawn, Stephen D., Migliori, Giovanni-Battista, Mwaba, Peter, O'Grady, Justin, Pletschette, Michel, Ramsay, Andrew, Chakaya, Jeremiah, Schito, Marco, Swaminathan, Soumya, Memish, Ziad, Maeurer, Markus and Atun, Rifat (2012) Drug-resistant tuberculosis: Current dilemmas, unanswered questions, challenges and priority needs. Journal of Infectious Diseases, 205 (suppl 2). S228-S240. ISSN 0022-1899

Kapata, Nathan, Chanda-Kapata, Pascalina, O'Grady, Justin, Schwank, Samana, Bates, Mathew, Mukonka, Victor, Zumla, Alimuddin and Mwaba, Peter (2011) Trends of Zambia’s tuberculosis burden over the past two decades. Tropical Medicine & International Health, 16 (11). pp. 1404-1409. ISSN 1365-3156

Reddington, Kate, O'Grady, Justin, Dorai-Raj, Siobhan, Niemann, Stefan, van Soolingen, Dick and Barry, Thomas (2011) A novel multiplex real-time PCR for the identification of Mycobacteria associated with zoonotic tuberculosis. PLoS One, 6 (8). ISSN 1932-6203

Rachow, Andrea, Zumla, Alimuddin, Heinrich, Norbert, Rojas-Ponce, Gabriel, Mtafya, Bariki, Reither, Klaus, Ntinginya, Elias N., O'Grady, Justin, Huggett, Jim, Dheda, Keertan, Boehme, Catharina, Perkins, Mark, Saathoff, Elmar and Hoelscher, Michael (2011) Rapid and accurate detection of Mycobacterium tuberculosis in sputum samples by Cepheid Xpert MTB/RIF assay: A clinical validation study. PLoS One, 6 (6). ISSN 1932-6203

Évinger, S., Bernert, Zs., Fóthi, E., Wolff, K., Kővári, I., Marcsik, A, Donoghue, H. D., O'Grady, J., Kiss, K. K. and Hajdu, T. (2011) New skeletal tuberculosis cases in past populations from Western Hungary (Transdanubia). HOMO - Journal of Comparative Human Biology, 62 (3). pp. 165-183.

Reddington, Kate, O'Grady, Justin, Dorai-Raj, Siobhan, Maher, Majella, van Soolingen, Dick and Barry, Thomas (2011) Novel multiplex real-time PCR diagnostic assay for identification and differentiation of Mycobacterium tuberculosis, Mycobacterium canettii, and Mycobacterium tuberculosis complex strains. Journal of Clinical Microbiology, 49 (2). pp. 651-657. ISSN 0095-1137

Zumla, Alimuddin, Atun, Rifat, Maeurer, Markus, Mwaba, Peter, Ma, Zhenkun, O'Grady, Justin, Bates, Matthew, Dheda, Keertan, Hoelscher, Michael and Grange, John (2011) Viewpoint: Scientific dogmas, paradoxes and mysteries of latent Mycobacterium tuberculosis infection. Tropical Medicine & International Health, 16 (1). pp. 79-83. ISSN 1365-3156

Dorai-Raj, Siobhan, O'Grady, Justin, Cormican, Martin and Colleran, Emer (2011) Identification of host-specific Bacteroidales 16S rDNA sequences from human sewage and ruminant feces. Journal of Basic Microbiology, 52 (3). pp. 277-284. ISSN 1521-4028

Ferrara, G., O'Grady, J., Zumla, A. and Maeurer, M. (2011) Xpert MTB/RIF test for tuberculosis. The Lancet, 378 (9790). p. 482. ISSN 1474-547X

McNerney, Ruth, Ferrara, Giovanni, O'Grady, Justin, Maeurer, Markus and Zumla, Alimuddin (2011) Screening of immigrants in the UK for latent tuberculosis. Expert Review of Respiratory Medicine, 5 (4). pp. 483-486. ISSN 1747-6348

Mwaba, Peter, McNerney, Ruth, Grobusch, Martin Peter, O'Grady, Justin, Bates, Matthew, Kapata, Nathan, Maeurer, Markus and Zumla, Alimuddin (2011) Achieving STOP TB Partnership goals: perspectives on development of new diagnostics, drugs and vaccines for tuberculosis. Tropical Medicine & International Health, 16 (7). pp. 819-827. ISSN 1365-3156

O'Grady, J., Maeurer, M., Atun, R., Abubakar, I., Mwaba, P., Bates, M., Kapata, N., Ferrara, G., Hoelscher, M. and Zumla, A. (2011) Tuberculosis in prisons: Anatomy of global neglect. European Respiratory Journal, 38 (4). pp. 752-754. ISSN 0903-1936

O'Grady, Justin, Hoelscher, Michael, Atun, Rifat, Bates, Matthew, Mwaba, Peter, Kapata, Nathan, Ferrara, Giovanni, Maeurer, Markus and Zumla, Alimuddin (2011) Tuberculosis in prisons in sub-Saharan Africa – the need for improved health services, surveillance and control. Tuberculosis, 91 (2). pp. 173-178. ISSN 1873-281X

O'Grady, Justin, Maeurer, Markus, Mwaba, Peter, Kapata, Nathan, Bates, Matthew, Hoelscher, Michael and Zumla, Alimuddin (2011) New and improved diagnostics for detection of drug-resistant pulmonary tuberculosis. Current Opinion in Pulmonary Medicine, 17 (3). pp. 134-141. ISSN 1070-5287

O'Grady, Justin, Mwaba, Peter, Bates, Matthew, Kapata, Nathan and Zumla, Alimuddin (2011) Tuberculosis in prisons in sub-Saharan Africa - a potential time bomb. South African Medical Journal, 101 (2). pp. 107-108. ISSN 0256-9574

O'Grady, Justin, Mwaba, Peter and Zumla, Alimuddin (2011) The health of prisoners. The Lancet, 377 (9782). p. 2001. ISSN 1474-547X

Spain, Elaine, Kojima, Robert, Kaner, Richard B., Wallace, Gordon G., O'Grady, Justin, Lacey, Katrina, Barry, Thomas, Keyes, Tia E. and Forster, Robert J. (2011) High sensitivity DNA detection using gold nanoparticle functionalised polyaniline nanofibres. Biosensors and Bioelectronics, 26 (5). pp. 2613-2618. ISSN 1873-4235

Jarand, Julie, Shean, Karen, O’Donnell, Max, Loveday, Marian, Kvasnovsky, Charlotte, Van der Walt, Martie, Adams, Shahieda, Willcox, Paul, O'Grady, Justin, Zumla, Alimuddin and Dheda, Keertan (2010) Extensively drug-resistant tuberculosis (XDR-TB) among health care workers in South Africa. Tropical Medicine & International Health, 15 (10). pp. 1179-1184. ISSN 1365-3156

Migliori, Giovanni Battista, Dheda, Keertan, Centis, Rosella, Mwaba, Peter, Bates, Matthew, O'Grady, Justin, Hoelscher, Michael and Zumla, Alimuddin (2010) Review of multidrug-resistant and extensively drug-resistant TB: global perspectives with a focus on sub-Saharan Africa. Tropical Medicine & International Health, 15 (9). pp. 1052-1066. ISSN 1365-3156

Dorai-Raj, Siobhan, O'Grady, Justin and Colleran, Emer (2009) Specificity and sensitivity evaluation of novel and existing Bacteroidales and Bifidobacteria-specific PCR assays on feces and sewage samples and their application for microbial source tracking in Ireland. Water Research, 43 (19). pp. 4980-4988. ISSN 1879-2448

O'Grady, Justin, Ruttledge, Margaret, Sedano-Balbás, Sara, Smith, Terry J., Barry, Thomas and Maher, Majella (2009) Rapid detection of Listeria monocytogenes in food using culture enrichment combined with real-time PCR. Food Microbiology, 26 (1). pp. 4-7. ISSN 0740-0020

McGuinness, Sheila, McCabe, Evonne, O’Regan, Edel, Dolan, Anthony, Duffy, Geraldine, Burgess, Catherine, Fanning, Seamus, Barry, Thomas and O'Grady, Justin (2009) Development and validation of a rapid real-time PCR based method for the specific detection of Salmonella on fresh meat. Meat Science, 83 (3). pp. 555-562. ISSN 1873-4138

O'Grady, Justin, Lacey, Katrina, Glynn, Barry, Smith, Terry J, Barry, Thomas and Maher, Majella (2009) tmRNA - a novel high-copy-number RNA diagnostic target - its application for Staphylococcus aureus detection using real-time NASBA. FEMS Microbiology Letters, 301 (2). pp. 218-223. ISSN 1574-6968

Glynn, Barry, Lacey, Katrina, O'Grady, Justin, Barry, Thomas, Smith, Terry J. and Maher, Majella (2008) Reusable surface plasmon resonance assay for the specific detection of Streptococcus Pneumoniae tmRNA. Journal of Rapid Methods & Automation in Microbiology, 16 (3). pp. 210-221. ISSN 1745-4581

Dimov, Ivan K, Garcia-Cordero, Jose L, O'Grady, Justin, Poulsen, Claus R, Viguier, Caroline, Kent, Lorcan, Daly, Paul, Lincoln, Bryan, Maher, Majella, O'Kennedy, Richard, Smith, Terry J, Ricco, Antonio J and Lee, Luke P (2008) Integrated microfluidic tmRNA purification and real-time NASBA device for molecular diagnostics. Lab on a Chip, 8 (12). pp. 2071-2078. ISSN 1473-0197

O'Grady, Justin, Sedano-Balbás, Sara, Maher, Majella, Smith, Terry and Barry, Thomas (2008) Rapid real-time PCR detection of Listeria monocytogenes in enriched food samples based on the ssrA gene, a novel diagnostic target. Food Microbiology, 25 (1). pp. 75-84. ISSN 0740-0020

Book Section

Wain, John and O'Grady, Justin (2017) Genomic Diversity in Salmonella enterica. In: Applied Genomics of Foodborne Pathogens. Food Microbiology and Food Safety . Springer, pp. 91-107. ISBN 978-3-319-43749-1

Clancy, Eoin, Reddington, Kate, Barry, Thomas, Huggett, Jim and O'Grady, Justin (2014) Future of Molecular Diagnostics: The Example of Infectious Diseases. In: Molecular Diagnostics: Current Research and Applications. Caister Academic Press.

Huggett, Jim, Dorai-Raj, Siobhan, Falinska, Agnieszka and O'Grady, Justin (2014) Molecular Diagnostics: An Introduction. In: Molecular Diagnostics: Current Research and Applications. Caister Academic Press.

Bateson, A. L., Reddington, K. and O'Grady, J. (2012) Molecular Diagnosis of Active Pulmonary Tuberculosis. In: Tuberculosis: Laboratory Diagnosis and Treatment Strategies. CABI Publishing, pp. 13-33.

Conference or Workshop Item

Nettles, R., Yang, L., Qin, S., Bednash, J.S., Fitch, A., Evankovich, J., Bain, W., Dunlap, D. G., Shah, F., Rapport, S., Lee, J., Morris, A., McVerry, B. J., O'Grady, Justin and Kitsios, G. (2019) Metagenomic Sequencing of Respiratory Microbial Communities for Detection of Etiologic Pathogens of Pneumonia in Mechanically-Ventilated Adult Patients. In: American Thoracic Society 2019 International Conference, 2019-05-17 - 2019-05-22, Dallas.

Garcia-Cordero, J.L., Dimov, I.K., O'Grady, Justin, Ducree, J., Barry, T. and Ricco, A.J. (2009) Monolithic centrifugal microfluidic platform for bacteria capture and concentration, lysis, nucleic-acid amplification, and real-time detection. In: IEEE 22nd International Conference on Micro Electro Mechanical Systems (MEMS)., 2009-01-01.