Items where Research Group is "Computational Biology

Published

Czabarka, E, Erdős, P L, Johnson, V and Moulton, V ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Generating functions for multi-labeled trees. Discrete Applied Mathematics, 161 (1-2). pp. 107-117. ISSN 0166-218X

Dress, A., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Spillner, A. (2013) Obtaining splits from cut sets of tight spans. Discrete Applied Mathematics, 161 (10-11). pp. 1409-1420. ISSN 0166-218X

Fisher, M, Dorgham, O and Laycock, S (2013) Fast reconstructed radiographs from Octree compressed volumetric data. International Journal of Computer Assisted Radiology and Surgery, 8 (2). pp. 313-322.

Grünewald, Stefan, Spillner, Andreas, Bastkowski, Sarah, Bögershausen, Anja and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) SuperQ:computing supernetworks from quartets. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (1). pp. 151-60. ISSN 1557-9964

Hellmuth, Marc, Hernandez-Rosales, Maribel, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Stadler, Peter F. and Wieseke, Nicolas (2013) Orthology relations, symbolic ultrametrics and cographs. Journal of Mathematical Biology, 66 (1-2). pp. 399-420.

Herrmann, Sven, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2013) Searching for realizations of finite metric spaces in tight spans. Discrete Optimization, 10 (4). pp. 310-319. ISSN 1572-5286

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica, 66 (3). pp. 714-738. ISSN 0178-4617

Humphries, Peter J. and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2013) On the neighborhoods of trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (3). pp. 721-728. ISSN 1545-5963

Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Verweij, Walter, Kawashima, Cintia G., Iqbal, Zamin, Jones, Jonathan D. G., Caccamo, Mario and MacLean, Daniel ORCID: https://orcid.org/0000-0003-1032-0887 (2013) Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de Bruijn graphs. PLoS One, 8 (3). ISSN 1932-6203

Li, Si, Choi, Kwok Pui and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2013) Degree distribution of large networks generated by the partial duplication model. Theoretical Computer Science, 476. pp. 94-108.

Li, Si, Choi, Kwok Pui, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Zhang, Louxin (2013) Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (6). pp. 1412-1421. ISSN 1545-5963

MacLean, Dan ORCID: https://orcid.org/0000-0003-1032-0887, Yoshida, Kentaro, Edwards, Anne, Crossman, Lisa, Clavijo, Bernardo, Clark, Matt, Swarbreck, David, Bashton, Matthew, Chapman, Patrick, Gijzen, Mark, Caccamo, Mario, Downie, Allan, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Saunders, Diane G. O. (2013) Crowdsourcing genomic analyses of ash and ash dieback - power to the people. GigaScience, 2 (1). ISSN 2047-217X

Madera Ramirez, F., Laycock, S. and Herrera, C. (2013) Ray-triangle collision detection to approximate objects with spheres. In: IASTED Internation Conference on Computer Graphics and Imaging, 2013-02-12 - 2013-02-14.

Mapleson, Daniel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Mohorianu, Irina-Ioana, Stocks, Matthew Benedict, Wood, John, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biology, 10 (7). pp. 1221-1230. ISSN 1547-6286

Newman, Scott, Howarth, Karen D., Greenman, Christopher, Bignell, Graham R., Tavaré, Simon and Edwards, Paul A. W. (2013) The relative timing of mutations in a breast cancer genome. PLoS One, 8 (6). ISSN 1932-6203

Popescu, Andrei-Alin and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2013) Lassoing and corralling rooted phylogenetic trees. Bulletin of Mathematical Biology, 75 (3). pp. 444-465. ISSN 0092-8240

Tam, Matthew D. B. S., Laycock, Stephen, Jayne, David, Babar, Judith and Noble, Brendon (2013) 3-D printouts of the tracheobronchial tree generated from CT DICOM files as an aid to planning future interventional management in a case of extensive tracheobronchial chondromalacia caused by advanced relapsing polychondritis. Journal of Radiology Case Reports, 7 (8). pp. 34-43. ISSN 1943-0922

Tam, Matthew D. B. S., Laycock, Stephen D., Brown, James R. I. and Jakeways, Matthew (2013) 3D printing of an aortic aneurysm to facilitate decision making and device selection for endovascular aneurysm repair in complex neck anatomy. Journal of Endovascular Therapy, 20 (6). pp. 863-867. ISSN 1526-6028

Taylor, Daniel, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095 and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2013) Classification of protein domain movements using Dynamic Contact Graphs. PLoS One, 8 (11). ISSN 1932-6203

Toseland, A., Daines, S. J., Clark, J. R., Kirkham, Amy, Strauss, J., Uhlig, C., Lenton, T. M., Valentin, K., Pearson, G. A., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Mock, T. ORCID: https://orcid.org/0000-0001-9604-0362 (2013) The impact of temperature on marine phytoplankton resource allocation and metabolism. Nature Climate Change, 3 (11). pp. 979-984. ISSN 1758-678X

Woodhams, Michael, Steane, Dorothy A., Jones, Rebecca C., Nicolle, Dean, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Holland, Barbara R. (2013) Novel distances for Dollo data. Systematic Biology, 62 (1). pp. 62-77. ISSN 1063-5157

Woolfenden, H.C., Gates, A.J. ORCID: https://orcid.org/0000-0002-4594-5038, Bocking, C., Blyth, M.G., Richardson, D.J. ORCID: https://orcid.org/0000-0002-6847-1832 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Modeling the effect of copper availability on bacterial denitrification. MicrobiologyOpen, 2 (5). pp. 756-765. ISSN 2045-8827