Items where Research Group is "Computational Biology

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Czabarka, E, Erdős, P L, Johnson, V and Moulton, V ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Generating functions for multi-labeled trees. Discrete Applied Mathematics, 161 (1-2). pp. 107-117. ISSN 0166-218X

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Dress, A., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Spillner, A. (2013) Obtaining splits from cut sets of tight spans. Discrete Applied Mathematics, 161 (10-11). pp. 1409-1420. ISSN 0166-218X

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Grünewald, Stefan, Spillner, Andreas, Bastkowski, Sarah, Bögershausen, Anja and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) SuperQ:computing supernetworks from quartets. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (1). pp. 151-60. ISSN 1557-9964

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Hellmuth, Marc, Hernandez-Rosales, Maribel, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Stadler, Peter F. and Wieseke, Nicolas (2013) Orthology relations, symbolic ultrametrics and cographs. Journal of Mathematical Biology, 66 (1-2). pp. 399-420.

Herrmann, Sven, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2013) Searching for realizations of finite metric spaces in tight spans. Discrete Optimization, 10 (4). pp. 310-319. ISSN 1572-5286

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica, 66 (3). pp. 714-738. ISSN 0178-4617

Humphries, Peter J. and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2013) On the neighborhoods of trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (3). pp. 721-728. ISSN 1545-5963

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Li, Si, Choi, Kwok Pui and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2013) Degree distribution of large networks generated by the partial duplication model. Theoretical Computer Science, 476. pp. 94-108.

Li, Si, Choi, Kwok Pui, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Zhang, Louxin (2013) Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (6). pp. 1412-1421. ISSN 1545-5963

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Mapleson, Daniel, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Mohorianu, Irina-Ioana, Stocks, Matthew Benedict, Wood, John, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biology, 10 (7). pp. 1221-1230. ISSN 1547-6286

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Newman, Scott, Howarth, Karen D., Greenman, Christopher, Bignell, Graham R., Tavaré, Simon and Edwards, Paul A. W. (2013) The relative timing of mutations in a breast cancer genome. PLoS One, 8 (6). ISSN 1932-6203

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Popescu, Andrei-Alin and Huber, Katharina T. (2013) Lassoing and corralling rooted phylogenetic trees. Bulletin of Mathematical Biology, 75 (3). pp. 444-465. ISSN 0092-8240

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Taylor, Daniel, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095 and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2013) Classification of protein domain movements using Dynamic Contact Graphs. PLoS One, 8 (11). ISSN 1932-6203

Toseland, A., Daines, S. J., Clark, J. R., Kirkham, Amy, Strauss, J., Uhlig, C., Lenton, T. M., Valentin, K., Pearson, G. A., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Mock, T. ORCID: https://orcid.org/0000-0001-9604-0362 (2013) The impact of temperature on marine phytoplankton resource allocation and metabolism. Nature Climate Change, 3 (11). pp. 979-984. ISSN 1758-678X

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Woodhams, Michael, Steane, Dorothy A., Jones, Rebecca C., Nicolle, Dean, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Holland, Barbara R. (2013) Novel distances for Dollo data. Systematic Biology, 62 (1). pp. 62-77. ISSN 1063-5157

Woolfenden, H.C., Gates, A.J. ORCID: https://orcid.org/0000-0002-4594-5038, Bocking, C., Blyth, M.G., Richardson, D.J. ORCID: https://orcid.org/0000-0002-6847-1832 and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2013) Modeling the effect of copper availability on bacterial denitrification. MicrobiologyOpen, 2 (5). pp. 756-765. ISSN 2045-8827