Items where Research Group is "Computational Biology

C

Czabarka, E, Erdős, P L, Johnson, V and Moulton, V (2013) Generating functions for multi-labeled trees. Discrete Applied Mathematics, 161 (1-2). pp. 107-117. ISSN 0166-218X

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Dress, A., Moulton, Vincent, Wu, Taoyang and Spillner, A. (2013) Obtaining splits from cut sets of tight spans. Discrete Applied Mathematics, 161 (10-11). pp. 1409-1420. ISSN 0166-218X

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Fisher, M, Dorgham, O and Laycock, S (2013) Fast reconstructed radiographs from Octree compressed volumetric data. International Journal of Computer Assisted Radiology and Surgery, 8 (2). pp. 313-322.

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Grünewald, Stefan, Spillner, Andreas, Bastkowski, Sarah, Bögershausen, Anja and Moulton, Vincent (2013) SuperQ:computing supernetworks from quartets. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (1). pp. 151-60. ISSN 1557-9964

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Hellmuth, Marc, Hernandez-Rosales, Maribel, Huber, Katharina T., Moulton, Vincent, Stadler, Peter F. and Wieseke, Nicolas (2013) Orthology relations, symbolic ultrametrics and cographs. Journal of Mathematical Biology, 66 (1-2). pp. 399-420.

Herrmann, Sven, Moulton, Vincent and Spillner, Andreas (2013) Searching for realizations of finite metric spaces in tight spans. Discrete Optimization, 10 (4). pp. 310-319. ISSN 1572-5286

Huber, K. T. and Moulton, V. (2013) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica, 66 (3). pp. 714-738. ISSN 0178-4617

Humphries, Peter J. and Wu, Taoyang (2013) On the neighborhoods of trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (3). pp. 721-728. ISSN 1545-5963

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Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Verweij, Walter, Kawashima, Cintia G., Iqbal, Zamin, Jones, Jonathan D. G., Caccamo, Mario and MacLean, Daniel (2013) Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de Bruijn graphs. PLoS One, 8 (3). ISSN 1932-6203

Li, Si, Choi, Kwok Pui and Wu, Taoyang (2013) Degree distribution of large networks generated by the partial duplication model. Theoretical Computer Science, 476. pp. 94-108.

Li, Si, Choi, Kwok Pui, Wu, Taoyang and Zhang, Louxin (2013) Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (6). pp. 1412-1421. ISSN 1545-5963

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MacLean, Dan, Yoshida, Kentaro, Edwards, Anne, Crossman, Lisa, Clavijo, Bernardo, Clark, Matt, Swarbreck, David, Bashton, Matthew, Chapman, Patrick, Gijzen, Mark, Caccamo, Mario, Downie, Allan, Kamoun, Sophien and Saunders, Diane G. O. (2013) Crowdsourcing genomic analyses of ash and ash dieback - power to the people. GigaScience, 2 (1). ISSN 2047-217X

Madera Ramirez, F., Laycock, S. and Herrera, C. (2013) Ray-triangle collision detection to approximate objects with spheres. In: IASTED Internation Conference on Computer Graphics and Imaging, 2013-02-12 - 2013-02-14.

Mapleson, Daniel, Moxon, Simon, Dalmay, Tamas and Moulton, Vincent (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Mohorianu, Irina-Ioana, Stocks, Matthew Benedict, Wood, John, Dalmay, Tamas and Moulton, Vincent (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biology, 10 (7). pp. 1221-1230. ISSN 1547-6286

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Newman, Scott, Howarth, Karen D., Greenman, Christopher, Bignell, Graham R., Tavaré, Simon and Edwards, Paul A. W. (2013) The relative timing of mutations in a breast cancer genome. PLoS One, 8 (6). ISSN 1932-6203

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Popescu, Andrei-Alin and Huber, Katharina T. (2013) Lassoing and corralling rooted phylogenetic trees. Bulletin of Mathematical Biology, 75 (3). pp. 444-465. ISSN 0092-8240

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Tam, Matthew D. B. S., Laycock, Stephen, Jayne, David, Babar, Judith and Noble, Brendon (2013) 3-D printouts of the tracheobronchial tree generated from CT DICOM files as an aid to planning future interventional management in a case of extensive tracheobronchial chondromalacia caused by advanced relapsing polychondritis. Journal of Radiology Case Reports, 7 (8). pp. 34-43. ISSN 1943-0922

Tam, Matthew D. B. S., Laycock, Stephen D., Brown, James R. I. and Jakeways, Matthew (2013) 3D printing of an aortic aneurysm to facilitate decision making and device selection for endovascular aneurysm repair in complex neck anatomy. Journal of Endovascular Therapy, 20 (6). pp. 863-867. ISSN 1526-6028

Taylor, Daniel, Cawley, Gavin and Hayward, Steven (2013) Classification of protein domain movements using Dynamic Contact Graphs. PLoS One, 8 (11). ISSN 1932-6203

Toseland, A., Daines, S. J., Clark, J. R., Kirkham, Amy, Strauss, J., Uhlig, C., Lenton, T. M., Valentin, K., Pearson, G. A., Moulton, V. and Mock, T. (2013) The impact of temperature on marine phytoplankton resource allocation and metabolism. Nature Climate Change, 3 (11). pp. 979-984. ISSN 1758-678X

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Woodhams, Michael, Steane, Dorothy A., Jones, Rebecca C., Nicolle, Dean, Moulton, V. and Holland, Barbara R. (2013) Novel distances for Dollo data. Systematic Biology, 62 (1). pp. 62-77. ISSN 1063-5157

Woolfenden, H.C., Gates, A.J., Bocking, C., Blyth, M.G., Richardson, D.J. and Moulton, V. (2013) Modeling the effect of copper availability on bacterial denitrification. MicrobiologyOpen, 2 (5). pp. 756-765. ISSN 2045-8827