Items where Research Group is "Computational Biology

Czabarka, E, Erdős, P L, Johnson, V and Moulton, V (2013) Generating functions for multi-labeled trees. Discrete Applied Mathematics, 161 (1-2). pp. 107-117. ISSN 0166-218X

Dress, A., Moulton, Vincent, Wu, Taoyang and Spillner, A. (2013) Obtaining splits from cut sets of tight spans. Discrete Applied Mathematics, 161 (10-11). pp. 1409-1420. ISSN 0166-218X

Grünewald, Stefan, Spillner, Andreas, Bastkowski, Sarah, Bögershausen, Anja and Moulton, Vincent (2013) SuperQ:computing supernetworks from quartets. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (1). pp. 151-60. ISSN 1557-9964

Hellmuth, Marc, Hernandez-Rosales, Maribel, Huber, Katharina T., Moulton, Vincent, Stadler, Peter F. and Wieseke, Nicolas (2013) Orthology relations, symbolic ultrametrics and cographs. Journal of Mathematical Biology, 66 (1-2). pp. 399-420.

Herrmann, Sven, Moulton, Vincent and Spillner, Andreas (2013) Searching for realizations of finite metric spaces in tight spans. Discrete Optimization, 10 (4). pp. 310-319. ISSN 1572-5286

Huber, K. T. and Moulton, V. (2013) Encoding and constructing 1-nested phylogenetic networks with trinets. Algorithmica, 66 (3). pp. 714-738. ISSN 0178-4617

Humphries, Peter J. and Wu, Taoyang (2013) On the neighborhoods of trees. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (3). pp. 721-728. ISSN 1545-5963

Leggett, Richard M., Ramirez-Gonzalez, Ricardo H., Verweij, Walter, Kawashima, Cintia G., Iqbal, Zamin, Jones, Jonathan D. G., Caccamo, Mario and MacLean, Daniel (2013) Identifying and classifying trait linked polymorphisms in non-reference species by walking coloured de Bruijn graphs. PLoS One, 8 (3). ISSN 1932-6203

Li, Si, Choi, Kwok Pui and Wu, Taoyang (2013) Degree distribution of large networks generated by the partial duplication model. Theoretical Computer Science, 476. pp. 94-108.

Li, Si, Choi, Kwok Pui, Wu, Taoyang and Zhang, Louxin (2013) Maximum likelihood inference of the evolutionary history of a PPI network from the duplication history of its proteins. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10 (6). pp. 1412-1421. ISSN 1545-5963

MacLean, Dan, Yoshida, Kentaro, Edwards, Anne, Crossman, Lisa, Clavijo, Bernardo, Clark, Matt, Swarbreck, David, Bashton, Matthew, Chapman, Patrick, Gijzen, Mark, Caccamo, Mario, Downie, Allan, Kamoun, Sophien and Saunders, Diane G. O. (2013) Crowdsourcing genomic analyses of ash and ash dieback - power to the people. GigaScience, 2 (1). ISSN 2047-217X

Mapleson, Daniel, Moxon, Simon, Dalmay, Tamas and Moulton, Vincent (2013) MirPlex:a tool for identifying miRNAs in high-throughput sRNA datasets without a genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 320 (1). pp. 47-56. ISSN 1552-5015

Mohorianu, Irina-Ioana, Stocks, Matthew Benedict, Wood, John, Dalmay, Tamas and Moulton, Vincent (2013) CoLIde: A bioinformatics tool for CO-expression-based small RNA Loci Identification using high-throughput sequencing data. RNA Biology, 10 (7). pp. 1221-1230. ISSN 1547-6286

Newman, Scott, Howarth, Karen D., Greenman, Christopher, Bignell, Graham R., Tavaré, Simon and Edwards, Paul A. W. (2013) The relative timing of mutations in a breast cancer genome. PLoS One, 8 (6). ISSN 1932-6203

Popescu, Andrei-Alin and Huber, Katharina T. (2013) Lassoing and corralling rooted phylogenetic trees. Bulletin of Mathematical Biology, 75 (3). pp. 444-465. ISSN 0092-8240

Taylor, Daniel, Cawley, Gavin and Hayward, Steven (2013) Classification of protein domain movements using Dynamic Contact Graphs. PLoS One, 8 (11). ISSN 1932-6203

Toseland, A., Daines, S. J., Clark, J. R., Kirkham, Amy, Strauss, J., Uhlig, C., Lenton, T. M., Valentin, K., Pearson, G. A., Moulton, V. and Mock, T. (2013) The impact of temperature on marine phytoplankton resource allocation and metabolism. Nature Climate Change, 3 (11). pp. 979-984. ISSN 1758-678X

Woodhams, Michael, Steane, Dorothy A., Jones, Rebecca C., Nicolle, Dean, Moulton, V. and Holland, Barbara R. (2013) Novel distances for Dollo data. Systematic Biology, 62 (1). pp. 62-77. ISSN 1063-5157

Woolfenden, H.C., Gates, A.J., Bocking, C., Blyth, M.G., Richardson, D.J. and Moulton, V. (2013) Modeling the effect of copper availability on bacterial denitrification. MicrobiologyOpen, 2 (5). pp. 756-765. ISSN 2045-8827