Items where School is "The Sainsbury Laboratory

Article

Belhaj, Khaoula, Chaparro-Garcia, Angela, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Patron, Nicola J. and Nekrasov, Vladimir (2015) Editing plant genomes with CRISPR/Cas9. Current Opinion in Biotechnology, 32. pp. 76-84. ISSN 0958-1669

Bourdais, Gildas, Burdiak, Paweł, Gauthier, Adrien, Nitsch, Lisette, Salojärvi, Jarkko, Rayapuram, Channabasavangowda, Idänheimo, Niina, Hunter, Kerri, Kimura, Sachie, Merilo, Ebe, Vaattovaara, Aleksia, Oracz, Krystyna, Kaufholdt, David, Pallon, Andres, Anggoro, Damar Tri, Glów, Dawid, Lowe, Jennifer, Zhou, Ji, Mohammadi, Omid, Puukko, Tuomas, Albert, Andreas, Lang, Hans, Ernst, Dieter, Kollist, Hannes, Brosché, Mikael, Durner, Jörg, Borst, Jan Willem, Collinge, David B., Karpiński, Stanisław, Lyngkjær, Michael F., Robatzek, Silke, Wrzaczek, Michael and Kangasjärvi, Jaakko (2015) Large-scale phenomics identifies primary and fine-tuning roles for CRKs in responses related to oxidative stress. PLoS Genetics, 11 (7). ISSN 1553-7390

Bozkurt, Tolga O., Belhaj, Khaoula, Dagdas, Yasin F., Chaparro-Garcia, Angela, Wu, Chih-hang, Cano, Liliana M. and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) Rerouting of plant late endocytic trafficking toward a pathogen interface. Traffic, 16 (2). pp. 204-226. ISSN 1398-9219

Chaparro-Garcia, Angela, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Nekrasov, Vladimir (2015) Boosting plant immunity with CRISPR/Cas. Genome Biology, 16. ISSN 1474-760X

Chaparro-Garcia, Angela, Schwizer, Simon, Sklenar, Jan, Yoshida, Kentaro, Petre, Benjamin, Bos, Jorunn I. B., Schornack, Sebastian, Jones, Alexandra M. E., Bozkurt, Tolga O. and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) Phytophthora infestans RXLR-WY effector AVR3a associates with dynamin-related protein 2 required for endocytosis of the plant pattern recognition receptor FLS2. PLoS One, 10 (9). ISSN 1932-6203

Couto, Daniel, Stransfeld, Lena, Arruabarrena, Ana, Zipfel, Cyril and Lozano-Durán, Rosa (2015) Broad application of a simple and affordable protocol for isolating plant RNA. BMC Research Notes, 8. ISSN 1756-0500

Dong, Suomeng, Raffaele, Sylvain and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) The two-speed genomes of filamentous pathogens:Waltz with plants. Current Opinion in Genetics and Development, 35. pp. 57-65. ISSN 0959-437X

Du, Juan, Verzaux, Estelle, Chaparro-Garcia, Angela, Bijsterbosch, Gerard, Keizer, L. C. Paul, Zhou, Ji, Liebrand, Thomas W. H., Xie, Conghua, Govers, Francine, Robatzek, Silke, Van Der Vossen, Edwin A. G., Jacobsen, Evert, Visser, Richard G. F., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Vleeshouwers, Vivianne G. A. A. (2015) Elicitin recognition confers enhanced resistance to Phytophthora infestans in potato. Nature Plants, 1 (4). ISSN 2055-026X

Fujisaki, Koki, Abe, Yoshiko, Ito, Akiko, Saitoh, Hiromasa, Yoshida, Kentaro, Kanzaki, Hiroyuki, Kanzaki, Eiko, Utsushi, Hiroe, Yamashita, Tetsuro, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Terauchi, Ryohei (2015) Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity. The Plant Journal, 83 (5). pp. 875-887. ISSN 0960-7412

Giannakopoulou, Artemis, Steele, John F C, Segretin, Maria Eugenia, Bozkurt, Tolga O., Zhou, Ji, Robatzek, Silke, Banfield, Mark J., Pais, Marina and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) Tomato I2 immune receptor can be engineered to confer partial resistance to the oomycete phytophthora infestans in addition to the fungus fusarium oxysporum. Molecular Plant-Microbe Interactions, 28 (12). pp. 1316-1329. ISSN 0894-0282

Gou, Mingyue, Zhang, Zemin, Zhang, Ning, Huang, Quansheng, Monaghan, Jacqueline, Yang, Huijun, Shi, Zhenying, Zipfel, Cyril and Hua, Jian (2015) Opposing effects on two phases of defense responses from concerted actions of HEAT SHOCK COGNATE70 and BONZAI1 in Arabidopsis. Plant Physiology, 169 (3). pp. 2304-2323. ISSN 0032-0889

Gupta, Yogesh K., Dagdas, Yasin F., Martinez-Rocha, Ana Lilia, Kershaw, Michael J., Littlejohn, George R., Ryder, Lauren S., Sklenar, Jan, Menke, Frank ORCID: https://orcid.org/0000-0003-2490-4824 and Talbot, Nicholas J. ORCID: https://orcid.org/0000-0001-6434-7757 (2015) Septin-dependent assembly of the exocyst is essential for plant infection by Magnaporthe oryzae. Plant Cell, 27 (11). pp. 3277-3289. ISSN 1040-4651

Holton, Nicholas, Nekrasov, Vladimir, Ronald, Pamela C and Zipfel, Cyril (2015) The phylogenetically-related pattern recognition receptors EFR and XA21 recruit similar immune signaling components in monocots and dicots. PLoS Pathogens, 11 (1). ISSN 1553-7374

Ilyas, Muhammad, Hörger, Anja C., Bozkurt, Tolga O., Van Den Burg, Harrold A., Kaschani, Farnusch, Kaiser, Markus, Belhaj, Khaoula, Smoker, Matthew, Joosten, Matthieu H. A. J., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and van der Hoorn, Renier A. L. (2015) Functional divergence of two secreted immune proteases of tomato. Current Biology, 25 (17). pp. 2300-2306. ISSN 0960-9822

Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Furzer, Oliver, Jones, Jonathan D. G., Judelson, Howard S., Ali, Gul Shad, Dalio, Ronaldo J. D., Roy, Sanjoy Guha, Schena, Leonardo, Zambounis, Antonios, Panabières, Franck, Cahill, David, Ruocco, Michelina, Figueiredo, Andreia, Chen, Xiao-ren, Hulvey, Jon, Stam, Remco, Lamour, Kurt, Gijzen, Mark, Tyler, Brett M., Grünwald, Niklaus J., Mukhtar, M. Shahid, Tomé, Daniel F. A., Tör, Mahmut, Van Den Ackerveken, Guido, Mcdowell, John, Daayf, Fouad, Fry, William E., Lindqvist-kreuze, Hannele, Meijer, Harold J. G., Petre, Benjamin, Ristaino, Jean, Yoshida, Kentaro, Birch, Paul R. J. and Govers, Francine (2015) The Top 10 oomycete pathogens in molecular plant pathology:Top 10 oomycete plant pathogens. Molecular Plant Pathology, 16 (4). pp. 413-434. ISSN 1464-6722

Kong, Guanghui, Zhao, Yao, Jing, Maofeng, Huang, Jie, Yang, Jin, Xia, Yeqiang, Kong, Liang, Ye, Wenwu, Xiong, Qin, Qiao, Yongli, Dong, Suomeng, Ma, Wenbo and Wang, Yuanchao (2015) The activation of Phytophthora effector Avr3b by plant cyclophilin is required for the Nudix hydrolase activity of Avr3b. PLoS Pathogens, 11 (8). ISSN 1553-7366

Ma, Ka Wai, Jiang, Shushu, Hawara, Eva, Lee, Donghyuk, Pan, Songqin, Coaker, Gitta, Song, Jikui and Ma, Wenbo (2015) Two serine residues in Pseudomonas syringae effector HopZ1a are required for acetyltransferase activity and association with the host co-factor. New Phytologist, 208 (4). pp. 1157-1168. ISSN 0028-646X

Maqbool, A., Saitoh, H., Franceschetti, M., Stevenson, C. E M, Uemura, A., Kanzaki, H., Kamoun, S. ORCID: https://orcid.org/0000-0002-0290-0315, Terauchi, R. and Banfield, M. J. (2015) Structural basis of pathogen recognition by an integrated HMA domain in a plant NLR immune receptor. eLife, 4. ISSN 2050-084X

McMullan, Mark, Gardiner, Anastasia, Bailey, Kate, Kemen, Eric, Ward, Ben J., Cevik, Volkan, Robert-Seilaniantz, Alexandre, Schultz-Larsen, Torsten, Balmuth, Alexi, Holub, Eric, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Jones, Jonathan D. G. (2015) Evidence for suppression of immunity as a driver for genomic introgressions and host range expansion in races of Albugo candida, a generalist parasite. eLife, 4. ISSN 2050-084X

Momany, Michelle, Di Pietro, Antonio, Alexander, William G., Barker, Bridget M., Harb, Omar S., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Martin, Francis, Pires, J. Chris, Stajich, Jason E., Thomma, Bart P H J and Unruh, Sarah (2015) Meeting report:Fungal genomics meets social media: Highlights of the 28th fungal genetics conference at asilomar. G3-Genes Genomes Genetics, 5 (12). pp. 2523-2525. ISSN 2160-1836

Oliva, Ricardo F., Cano, Liliana M., Raffaele, Sylvain, Win, Joe, Bozkurt, Tolga O., Belhaj, Khaoula, Oh, Sang-keun, Thines, Marco and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) A recent expansion of the RXLR effector gene Avrblb2 is maintained in global populations of Phytophthora infestans indicating different contributions to virulence. Molecular Plant-Microbe Interactions, 28 (8). pp. 901-912. ISSN 0894-0282

Patron, Nicola J., Orzaez, Diego, Marillonnet, Sylvestre, Warzecha, Heribert, Matthewman, Colette, Youles, Mark, Raitskin, Oleg, Leveau, Aymeric, Farré, Gemma, Rogers, Christian, Smith, Alison, Hibberd, Julian, Webb, Alex A. R., Locke, James, Schornack, Sebastian, Ajioka, Jim, Baulcombe, David C., Zipfel, Cyril, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Jones, Jonathan D. G., Kuhn, Hannah, Robatzek, Silke, Van Esse, H. Peter, Sanders, Dale, Oldroyd, Giles, Martin, Cathie, Field, Rob ORCID: https://orcid.org/0000-0001-8574-0275, O'Connor, Sarah, Fox, Samantha, Wulff, Brande, Miller, Ben ORCID: https://orcid.org/0000-0003-0882-033X, Breakspear, Andy, Radhakrishnan, Guru, Delaux, Pierre-Marc, Loqué, Dominique, Granell, Antonio, Tissier, Alain, Shih, Patrick, Brutnell, Thomas P., Quick, W. Paul, Rischer, Heiko, Fraser, Paul D., Aharoni, Asaph, Raines, Christine, South, Paul F., Ané, Jean-Michel, Hamberger, Björn R., Langdale, Jane, Stougaard, Jens, Bouwmeester, Harro, Udvardi, Michael, Murray, James A. H., Ntoukakis, Vardis, Schäfer, Patrick, Denby, Katherine, Edwards, Keith J., Osbourn, Anne and Haseloff, Jim (2015) Standards for plant synthetic biology: A common syntax for exchange of DNA parts. New Phytologist, 208 (1). pp. 13-19. ISSN 0028-646X

Petre, Benjamin, Saunders, Diane G. O., Sklenar, Jan, Lorrain, Cécile, Win, Joe, Duplessis, Sébastien and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) Candidate effector proteins of the rust pathogen Melampsora larici-populina target diverse plant cell compartments. Molecular Plant-Microbe Interactions, 28 (6). pp. 689-700. ISSN 0894-0282

Qiao, Yongli, Shi, Jinxia, Zhai, Yi, Hou, Yingnan and Ma, Wenbo (2015) Phytophthora effector targets a novel component of small RNA pathway in plants to promote infection. Proceedings of the National Academy of Sciences of the United States of America, 112 (18). pp. 5850-5855. ISSN 0027-8424

Rallapalli, Ghanasyam, Players, Fraxinus, Saunders, Diane Go, Yoshida, Kentaro, Edwards, Anne, Lugo, Carlos A., Collin, Steve, Clavijo, Bernardo, Corpas, Manuel, Swarbreck, David, Clark, Matthew, Downie, J. Allan, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and MacLean, Dan and Team Cooper (2015) Lessons from fraxinus, a crowd-sourced citizen science game in genomics. eLife, 4. ISSN 2050-084X

Rickett, L. M. and Blyth, M. G. (2015) Flow in a slowly-tapering channel with oscillating walls. Acta Mechanica, 226 (4). pp. 1167-1181. ISSN 0001-5970

Rickett, Lydia, Penfold, Robert, Blyth, Mark, Purvis, Richard and Cooker, Mark (2015) Incipient mixing by Marangoni effects in slow viscous flow of two immiscible fluid layers. IMA Journal of Applied Mathematics, 80 (5). pp. 1582-1618. ISSN 0272-4960

Rickett, Lydia M, Pullen, Nick, Hartley, Matthew, Zipfel, Cyril, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Baranyi, József and Morris, Richard J (2015) Incorporating prior knowledge improves detection of differences in bacterial growth rate. BMC Systems Biology, 9. ISSN 1752-0509

Sarris, Panagiotis F., Duxbury, Zane, Huh, Sung Un, Ma, Yan, Segonzac, Cécile, Sklenar, Jan, Derbyshire, Paul, Cevik, Volkan, Rallapalli, Ghanasyam, Saucet, Simon B., Wirthmueller, Lennart, Menke, Frank L. H. ORCID: https://orcid.org/0000-0003-2490-4824, Sohn, Kee Hoon and Jones, Jonathan D. G. (2015) A plant immune receptor detects pathogen effectors that target WRKY transcription factors. Cell, 161 (5). pp. 1089-1100. ISSN 0092-8674

Schoonbeek, Henk-Jan, Wang, Hsi-Hua, Stefanato, Francesca L, Craze, Melanie, Bowden, Sarah, Wallington, Emma, Zipfel, Cyril and Ridout, Christopher J (2015) Arabidopsis EF-Tu receptor enhances bacterial disease resistance in transgenic wheat. New Phytologist, 206 (2). pp. 606-613. ISSN 0028-646X

Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicholas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E, Daudi, Arsalan, Petzold, Christopher J, Singan, Vasanth R, Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L, Zipfel, Cyril and Ronald, Pamela C (2015) Correction:Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses. PLoS Pathogens, 11 (4). ISSN 1553-7374

Schwessinger, Benjamin, Bahar, Ofir, Thomas, Nicholas, Thomas, Nicolas, Holton, Nicolas, Nekrasov, Vladimir, Ruan, Deling, Canlas, Patrick E, Daudi, Arsalan, Petzold, Christopher J, Singan, Vasanth R, Kuo, Rita, Chovatia, Mansi, Daum, Christopher, Heazlewood, Joshua L, Zipfel, Cyril and Ronald, Pamela C (2015) Transgenic expression of the dicotyledonous pattern recognition receptor EFR in rice leads to ligand-dependent activation of defense responses. PLoS Pathogens, 11 (3). ISSN 1553-7374

Sharma, Rahul, Xia, Xiaojuan, Cano, Liliana M., Evangelisti, Edouard, Kemen, Eric, Judelson, Howard, Oome, Stan, Sambles, Christine, van den Hoogen, D. Johan, Kitner, Miloslav, Klein, Joël, Meijer, Harold J G, Spring, Otmar, Win, Joe, Zipper, Reinhard, Bode, Helge B., Govers, Francine, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Schornack, Sebastian, Studholme, David J., Van den Ackerveken, Guido and Thines, Marco (2015) Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora. BMC Genomics, 16 (1). ISSN 1471-2164

Wirthmueller, Lennart, Roth, Charlotte, Fabro, Georgina, Caillaud, Marie-Cécile, Rallapalli, Ghanasyam, Asai, Shuta, Sklenar, Jan, Jones, Alexandra M. E., Wiermer, Marcel, Jones, Jonathan D. G. and Banfield, Mark J. (2015) Probing formation of cargo/importin-α transport complexes in plant cells using a pathogen effector. The Plant Journal, 81 (1). pp. 40-52. ISSN 0960-7412

Yoshida, Kentaro, Sasaki, Eriko and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) Computational analyses of ancient pathogen DNA from herbarium samples:Challenges and prospects. Frontiers in Plant Science, 6. ISSN 1664-462X

Younsi, Reda and Maclean, Dan (2015) Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs. Bioinformatics, 31 (5). pp. 642-646. ISSN 1367-4803

Book Section

Ramamurthy, Balachander, Doonan, John H., Zhou, Ji, Han, Jiwan and Liu, Yonghuai (2015) Skeletonization of 3D plant point cloud using a voxel based thinning algorithm. In: Proceedings of the 23rd European Signal Processing Conference (EUSIPCO). European Association for Signal Processing, Nice, pp. 2686-2690. ISBN 9780992862633

Terauchi, Ryohei, Abe, Akira, Takagi, Hiroki, Tamiru, Muluneh, Fekih, Rym, Natsume, Satoshi, Yaegashi, Hiroki, Kosugi, Shunichi, Kanzaki, Hiroyuki, Matsumura, Hideo, Saitoh, Hiromasa, Yoshida, Kentaro, Cano, Liliana and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2015) Whole genome sequencing to identify genes and QTL in rice. In: Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches. Springer, pp. 33-42. ISBN 9783319171579