Items where Author is "Greenman, Christopher"

Published

Greenman, Chris D. (2023) Reaction diffusion systems and extensions of quantum stochastic processes. Journal of Physics A: Mathematical and Theoretical, 56 (23). ISSN 1751-8113

Greenman, Chris D. (2022) Time series path integral expansions for stochastic processes. Journal of Statistical Physics, 187 (3). ISSN 0022-4715

Greenman, Chris D. (2020) Duality relations between spatial birth-death processes and diffusions in Hilbert space. Journal of Physics A: Mathematical and Theoretical, 53 (44). ISSN 1751-8113

Greenman, Christopher, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Penso Dolfin, Luca (2020) The complexity of genome rearrangement combinatorics under the infinite sites model. Journal of Theoretical Biology, 501. ISSN 0022-5193

Xia, Mingtao, Greenman, Chris D. and Chou, Tom (2020) PDE models of adder mechanisms in cellular proliferation. SIAM Journal on Applied Mathematics (SIAP), 80 (3). 1307–1335. ISSN 0036-1399

Greenman, Chris D. (2018) Doi-Peliti path integral methods for stochastic systems with partial exclusion. Physica A: Statistical Mechanics and Its Applications, 505. pp. 211-221. ISSN 0378-4371

Wedge, David C., Gundem, Gunes, Mitchell, Thomas, Woodcock, Dan J., Martincorena, Inigo, Ghori, Mohammed, Zamora, Jorge, Butler, Adam, Whitaker, Hayley, Kote-Jarai, Zsofia, Alexandrov, Ludmil B., Van Loo, Peter, Massie, Charlie E., Dentro, Stefan, Warren, Anne Y., Verrill, Clare, Berney, Dan M., Dennis, Nening, Merson, Sue, Hawkins, Steve, Howat, William, Lu, Yong-Jie, Lambert, Adam, Kay, Jonathan, Kremeyer, Barbara, Karaszi, Katalin, Luxton, Hayley, Camacho, Niedzica, Marsden, Luke, Edwards, Sandra, Matthews, Lucy, Bo, Valeria, Leongamornlert, Daniel, McLaren, Stuart, Ng, Anthony, Yu, Yongwei, Zhang, Hongwei, Dadaev, Tokhir, Thomas, Sarah, Easton, Douglas F., Ahmed, Mahbubl, Bancroft, Elizabeth, Fisher, Cyril, Livni, Naomi, Nicol, David, Tavaré, Simon, Gill, Pelvender, Greenman, Christopher, Khoo, Vincent, Van As, Nicholas, Kumar, Pardeep, Ogden, Christopher, Cahill, Declan, Thompson, Alan, Mayer, Erik, Rowe, Edward, Dudderidge, Tim, Gnanapragasam, Vincent, Shah, Nimish C., Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Teague, Jon, Hazell, Steven, Corbishley, Cathy, de Bono, Johann, Attard, Gerhardt, Isaacs, William, Visakorpi, Tapio, Fraser, Michael, Boutros, Paul C., Bristow, Robert G., Workman, Paul, Sander, Chris, Hamdy, Freddie C., Futreal, Andrew, McDermott, Ultan, Al-Lazikani, Bissan, Lynch, Andrew G., Bova, G. Steven, Foster, Christopher S., Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794, Neal, David E., Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 and Eeles, Rosalind A. (2018) Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets. Nature Genetics, 50. 682–692. ISSN 1061-4036

Fishwick, Carl, Higgins, Janet, Percival-Alwyn, Lawrence, Hustler, Arianna, Pearson, Joanna, Bastkowski, Sarah, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Swarbreck, David, Greenman, Chris D. and Southgate, Jennifer (2017) Heterarchy of transcription factors driving basal and luminal cell phenotypes in human urothelium. Cell Death and Differentiation, 24. pp. 809-818. ISSN 1350-9047

Greenman, Christopher (2017) A path integral approach to age dependent branching processes. Journal of Statistical Mechanics: Theory and Experiment, 2017 (March). ISSN 1742-5468

Behjati, Sam, Gundem, Gunes, Wedge, David C., Roberts, Nicola D., Tarpey, Patrick S., Cooke, Susanna L., Van Loo, Peter, Alexandrov, Ludmil B., Ramakrishna, Manasa, Davies, Helen, Nik-Zainal, Serena, Hardy, Claire, Latimer, Calli, Raine, Keiran M., Stebbings, Lucy, Menzies, Andy, Jones, David, Shepherd, Rebecca, Butler, Adam P., Teague, Jon W., Jorgensen, Mette, Khatri, Bhavisha, Pillay, Nischalan, Shlien, Adam, Futreal, P. Andrew, Badie, Christophe, Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042, Eeles, Rosalind A., Easton, Douglas, Foster, Christopher, Neal, David E., Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794, Hamdy, Freddie, Lu, Yong-Jie, Lynch, Andrew G., Massi, Charlie E., Ng, Anthony, Whitaker, Hayley C., Yu, Yongwei, Zhang, Hongwei, Bancroft, Elizabeth, Berney, Dan, Camacho, Niedzica, Corbishley, Cathy, Dadaev, Tokhir, Dennis, Nening, Dudderidge, Tim, Edwards, Sandra, Fisher, Cyril, Ghori, Jilur, Gnanapragasam, Vincent J., Greenman, Christopher, Hawkins, Steve, Hazell, Steven, Howat, Will, Karaszi, Katalin, Kay, Jonathan, Kote-Jarai, Zsofia, Kremeyer, Barbara, Kumar, Pardeep, Lambert, Adam, Leongamornlert, Daniel, Livni, Naomi, Luxton, Hayley, Matthews, Lucy, Mayer, Erik, Merson, Susan, Nicol, David, Ogden, Christopher, O'Meara, Sarah, Pelvender, Gill, Shah, Nimish C., Tavare, Simon, Thomas, Sarah, Thompson, Alan, Verrill, Claire, Warren, Anne, Zamora, Jorge, McDermott, Ultan, Bova, G. Steven, Richardson, Andrea L., Flanagan, Adrienne M., Stratton, Michael R. and Campbell, Peter J. (2016) Mutational signatures of ionizing radiation in second malignancies. Nature Communications, 7. ISSN 2041-1723

Chou, Tom and Greenman, Chris D. (2016) A hierarchical kinetic theory of birth, death, and fission in age-structured interacting populations. Journal of Statistical Physics, 164 (1). pp. 49-76. ISSN 0022-4715

Beerenwenko, Niko, Greenman, Christopher and Lagergren, Jens (2016) Computational cancer biology: An evolutionary perspective. PLoS Computational Biology, 12 (2). ISSN 1553-734X

Greenman, Christopher and Chou, Tom (2016) Kinetic theory of age-structured stochastic birth-death processes. Physical Review E, 93 (1). ISSN 1539-3755

Greenman, C. D., Cooke, S. L., Marshall, J., Stratton, M. R. and Campbell, P. J. (2016) Modeling the evolution space of breakage fusion bridge cycles with a stochastic folding process. Journal of Mathematical Biology, 72 (1). pp. 47-86. ISSN 0303-6812

Chedom, Donatien F., Murcia, Pablo R. and Greenman, Chris D. (2015) Inferring the clonal structure of viral populations from time series sequencing. PLoS Computational Biology, 11 (11). ISSN 1553-7358

Penso-Dolfin, L., Wu, T. ORCID: https://orcid.org/0000-0002-2663-2001 and Greenman, C. (2015) The combinatorics of tandem duplication. Discrete Applied Mathematics, 194. 1–22. ISSN 0166-218X

Kelly, Steven, Greenman, Christopher, Cook, Peter R. and Papantonis, Argyris (2015) Exon skipping is correlated with exon circularization. Journal of Molecular Biology, 427 (15). pp. 2414-2417. ISSN 0022-2836

Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042, Eeles, Rosalind A., Wedge, David C., Van Loo, Peter, Gundem, Gunes, Alexandrov, Ludmil B., Kreymer, Barbara, Butler, Adam, Lynch, Andrew, Edwards, Sandra E., Camacho, Niedzica, Massie, Charlie E., Kote-Jarai, Zsofia, Dennis, Nening, Merson, Sue, Leongamornlert, Daniel A., Zamora, Jorge, Kay, Jonathan, Luxton, Hayley J., Corbishley, Cathy, Thomas, Sarah, Nik-Zainal, Serena, Ramakrishna, Manasa, O'Meara, Sarah, Matthews, Lucy, Clark, Jeremy, Hurst, Rachel, Mithen, Richard, Bristow, Robert G., Boutros, Paul C., Fraser, Michael, Cooke, Susanna, Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Hinton, Jon, Teague, Jon, McLaren, Stuart, Mudie, Laura, Hardy, Claire, Anderson, Elizabeth, Joseph, Olivia, Goody, Victoria, Robinson, Ben, Maddison, Mark, Gamble, Stephen J., Greenman, Christopher, Berney, Dan, Hazell, Steven, Livni, Naomi, Fisher, Cyril, Ogden, Christopher, Kumar, Pardeep, Thompson, Alan, Woodhouse, Christopher J., Nicol, David, Mayer, Erik, Dudderidge, Tim, Shah, Nimish, Gnanapragasam, Vincent, Voet, Thierry, Campbell, Peter, Futreal, P. Andrew, Easton, Douglas F., Warren, Anne Y., Foster, Christopher S., Stratton, Michael R., Whitaker, Hayley C., McDermott, Ultan, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794 and Neal, David E. and the ICGC Prostate Group (2015) Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue. Nature Genetics, 47. 367–372. ISSN 1061-4036

Roshan, A., Jones, P. H. and Greenman, C. D. (2014) Exact, time-independent estimation of clone size distributions in normal and mutated cells. Journal of The Royal Society Interface, 11 (99). ISSN 1742-5689

Newman, Scott, Howarth, Karen D., Greenman, Christopher, Bignell, Graham R., Tavaré, Simon and Edwards, Paul A. W. (2013) The relative timing of mutations in a breast cancer genome. PLoS One, 8 (6). ISSN 1932-6203

McBride, David J., Etemadmoghadam, Dariush, Cooke, Susanna L., Alsop, Kathryn, George, Joshy, Butler, Adam, Cho, Juok, Galappaththige, Danushka, Greenman, Christopher, Howarth, Karen D., Lau, King W., Ng, Charlotte K., Raine, Keiran, Teague, Jon, Wedge, David C., Caubit, Xavier, Stratton, Michael R., Brenton, James D., Campbell, Peter J., Futreal, P. Andrew and Bowtell, David D. L. and Australian Ovarian Cancer Study Group (2012) Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes. The Journal of Pathology, 227 (4). pp. 446-455. ISSN 0022-3417

Greenman, C. D. (2012) Haploinsufficient gene selection in cancer. Science, 337 (6090). pp. 47-48. ISSN 0036-8075

Stephens, Philip J., Tarpey, Patrick S., Davies, Helen, Van Loo, Peter, Greenman, Chris, Wedge, David C., Zainal, Serena Nik, Martin, Sancha, Varela, Ignacio, Bignell, Graham R., Yates, Lucy R., Papaemmanuil, Elli, Beare, David, Butler, Adam, Cheverton, Angela, Gamble, John, Hinton, Jonathan, Jia, Mingming, Jayakumar, Alagu, Jones, David, Latimer, Calli, Lau, King Wai, McLaren, Stuart, McBride, David J., Menzies, Andrew, Mudie, Laura, Raine, Keiran, Rad, Roland, Spencer Chapman, Michael, Teague, Jon, Easton, Douglas, Langerød, Anita, Lee, Ming Ta Michael, Shen, Chen-Yang, Tee, Benita Tan Kiat, Huimin, Bernice Wong, Broeks, Annegien, Vargas, Ana Cristina, Turashvili, Gulisa, Martens, John, Fatima, Aquila, Miron, Penelope, Chin, Suet-Feung, Thomas, Gilles, Boyault, Sandrine, Mariani, Odette, Lakhani, Sunil R., van de Vijver, Marc, van't Veer, Laura, Foekens, John, Desmedt, Christine, Sotiriou, Christos, Tutt, Andrew, Caldas, Carlos, Reis-Filho, Jorge S., Aparicio, Samuel A. J. R., Vincent Salomon, Anne, Børresen-Dale, Anne-Lise, Richardson, Andrea L., Campbell, Peter J., Futreal, P. Andrew and Stratton, Michael R. and The Oslo Breast Cancer Consortium (OSBREAC) (2012) The landscape of cancer genes and mutational processes in breast cancer. Nature, 486 (7403). 400–404. ISSN 0028-0836

Nik-Zainal, Serena, Alexandrov, Ludmil B., Wedge, David C., Van Loo, Peter, Greenman, Christopher D., Raine, Keiran, Jones, David, Hinton, Jonathan, Marshall, John, Stebbings, Lucy A., Menzies, Andrew, Martin, Sancha, Leung, Kenric, Chen, Lina, Leroy, Catherine, Ramakrishna, Manasa, Rance, Richard, Lau, King Wai, Mudie, Laura J., Varela, Ignacio, McBride, David J., Bignell, Graham R., Cooke, Susanna L., Shlien, Adam, Gamble, John, Whitmore, Ian, Maddison, Mark, Tarpey, Patrick S., Davies, Helen R., Papaemmanuil, Elli, Stephens, Philip J., McLaren, Stuart, Butler, Adam P., Teague, Jon W., Jönsson, Göran, Garber, Judy E., Silver, Daniel, Miron, Penelope, Fatima, Aquila, Boyault, Sandrine, Langerød, Anita, Tutt, Andrew, Martens, John W. M., Aparicio, Samuel A. J. R., Borg, Åke, Vincent Salomon, Anne, Thomas, Gilles, Børresen-Dale, Anne-Lise, Richardson, Andrea L., Neuberger, Michael S., Futreal, P. Andrew, Campbell, Peter J. and Stratton, Michael R. (2012) Mutational processes molding the genomes of 21 breast cancers. Cell, 149 (5). pp. 979-993. ISSN 0092-8674

Nik-Zainal, Serena, Van Loo, Peter, Wedge, David C., Alexandrov, Ludmil B., Greenman, Christopher D., Lau, King Wai, Raine, Keiran, Jones, David, Marshall, John, Ramakrishna, Manasa, Shlien, Adam, Cooke, Susanna L., Hinton, Jonathan, Menzies, Andrew, Stebbings, Lucy A., Leroy, Catherine, Jia, Mingming, Rance, Richard, Mudie, Laura J., Gamble, Stephen J., Stephens, Philip J., McLaren, Stuart, Tarpey, Patrick S., Papaemmanuil, Elli, Davies, Helen R., Varela, Ignacio, McBride, David J., Bignell, Graham R., Leung, Kenric, Butler, Adam P., Teague, Jon W., Martin, Sancha, Jönsson, Göran, Mariani, Odette, Boyault, Sandrine, Miron, Penelope, Fatima, Aquila, Langerød, Anita, Aparicio, Samuel A. J. R., Tutt, Andrew, Sieuwerts, Anieta M., Borg, Åke, Thomas, Gilles, Vincent Salomon, Anne, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Futreal, P. Andrew, Stratton, Michael R. and Campbell, Peter J. (2012) The life history of 21 breast cancers. Cell, 149 (5). pp. 994-1007. ISSN 0092-8674

Greenman, Chris D., Pleasance, Erin D., Newman, Scott, Yang, Fengtang, Fu, Beiyuan, Nik-Zainal, Serena, Jones, David, Lau, King Wai, Carter, Nigel, Edwards, Paul A. W., Futreal, P. Andrew, Stratton, Michael R. and Campbell, Peter J. (2012) Estimation of rearrangement phylogeny for cancer genomes. Genome Research, 22 (2). pp. 346-361. ISSN 1088-9051

Greenman, Christopher, Pleasance, Erin D., Newman, Scott, Yang, Fengtang, Fu, Beiyuan, Nik-Zainal, Serena, Jones, David, Lau, King Wai, Carter, Nigel, Edwards, Paul A. W., Futreal, P. Andrew, Stratton, Michael R. and Campbell, Peter J. (2012) Estimation of rearrangement phylogeny in cancer. Genome Research, 22. pp. 346-361. ISSN 1549-5469

Garnett, Mathew J., Edelman, Elena J., Heidorn, Sonja J., Dastur, Anahita, Lau, King Wai, Greninger, Patricia, Thompson, I. Richard, Luo, Xi, Soares, Jorge, Liu, Qingsong, Iorio, Francesco, Surdez, Didier, Chen, Li, Milano, Randy J., Bignell, Graham R., Tam, Ah T., Davies, Helen, Stevenson, Jesse A., Barthorpe, Syd, Lutz, Stephen R., Kogera, Fiona, Lawrence, Karl, Mclaren-douglas, Anne, Mitropoulos, Xeni, Mironenko, Tatiana, Thi, Helen, Richardson, Laura, Zhou, Wenjun, Jewitt, Frances, Zhang, Tinghu, O'Brien, Patrick, Boisvert, Jessica L., Price, Stacey, Hur, Wooyoung, Yang, Wanjuan, Deng, Xianming, Butler, Adam, Choi, Hwan Geun, Chang, Jae Won, Baselga, Jose, Stamenkovic, Ivan, Engelman, Jeffrey A., Sharma, Sreenath V., Delattre, Olivier, Saez-rodriguez, Julio, Gray, Nathanael S., Settleman, Jeffrey, Futreal, P. Andrew, Haber, Daniel A., Stratton, Michael R., Ramaswamy, Sridhar, Mcdermott, Ultan, Benes, Cyril H. and Greenman, Christopher (2012) Systematic identification of genomic markers of drug sensitivity in cancer cells. Nature, 483 (7391). pp. 570-575. ISSN 0028-0836

Fischer, Andrej, Greenman, Chris and Mustonen, Ville (2011) Germline fitness based scoring of cancer mutations. Genetics, 188 (2). pp. 383-393. ISSN 1943-2631

Varela, Ignacio, Tarpey, Patrick, Raine, Keiran, Huang, Dachuan, Ong, Choon Kiat, Stephens, Philip, Davies, Helen, Jones, David, Lin, Meng-lay, Teague, Jon, Bignell, Graham, Butler, Adam, Cho, Juok, Dalgliesh, Gillian L., Galappaththige, Danushka, Hardy, Claire, Jia, Mingming, Latimer, Calli, Lau, King Wai, Marshall, John, Mclaren, Stuart, Menzies, Andrew, Mudie, Laura, Stebbings, Lucy, Largaespada, David A., Wessels, L. F. A., Richard, Stephane, Kahnoski, Richard J., Anema, John, Tuveson, David A., Perez-Mancera, Pedro A., Mustonen, Ville, Fischer, Andrej, Adams, David J., Rust, Alistair, Chan-on, Waraporn, Subimerb, Chutima, Dykema, Karl, Furge, Kyle, Campbell, Peter J., Teh, Bin Tean, Stratton, Michael R., Futreal, P. Andrew and Greenman, Christopher (2011) Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature, 469 (7331). pp. 539-542. ISSN 1476-4687

Stephens, Philip J., Greenman, Chris D., Fu, Beiyuan, Yang, Fengtang, Bignell, Graham R., Mudie, Laura J., Pleasance, Erin D., Lau, King Wai, Beare, David, Stebbings, Lucy A., McLaren, Stuart, Lin, Meng-Lay, McBride, David J., Varela, Ignacio, Nik-Zainal, Serena, Leroy, Catherine, Jia, Mingming, Menzies, Andrew, Butler, Adam P., Teague, Jon W., Quail, Michael A., Burton, John, Swerdlow, Harold, Carter, Nigel P., Morsberger, Laura A., Iacobuzio-Donahue, Christine, Follows, George A., Green, Anthony R., Flanagan, Adrienne M., Stratton, Michael R., Futreal, P. Michael and Campbell, Peter J. (2011) Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell, 144 (1). pp. 27-40. ISSN 0092-8674

Stjernqvist, Susann, Ryden, Tobias and Greenman, Chris D. (2011) Model-integrated estimation of normal tissue contamination for cancer SNP allelic copy number data. Cancer Informatics, 10. pp. 159-173. ISSN 1176-9351

Santarius, Thomas, Bignell, Graham R., Greenman, Christopher, Widaa, Sara, Chen, Lina, Mahoney, Claire L., Butler, Adam, Edkins, Sarah, Waris, Sahar, Thornalley, Paul J., Futreal, P. Andrew and Stratton, Michael R. (2010) GLO1-A novel amplified gene in human cancer. Genes, Chromosomes & Cancer, 49 (8). pp. 711-725. ISSN 1045-2257

Bignell, Graham R., Greenman, Chris D., Davies, Helen, Butler, Adam P., Edkins, Sarah, Andrews, Jenny M., Buck, Gemma, Chen, Lina, Beare, David, Latimer, Calli, Widaa, Sara, Hinton, Jonathon, Fahey, Ciara, Fu, Beiyuan, Swamy, Sajani, Dalgliesh, Gillian L., Teh, Bin T., Deloukas, Panos, Yang, Fengtang, Campbell, Peter J., Futreal, P. Andrew and Stratton, Michael R. (2010) Signatures of mutation and selection in the cancer genome. Nature, 463 (7283). pp. 893-898. ISSN 1476-4687

Dalgliesh, Gillian L., Furge, Kyle, Greenman, Chris, Chen, Lina, Bignell, Graham, Butler, Adam, Davies, Helen, Edkins, Sarah, Hardy, Claire, Latimer, Calli, Teague, Jon, Andrews, Jenny, Barthorpe, Syd, Beare, Dave, Buck, Gemma, Campbell, Peter J., Forbes, Simon, Jia, Mingming, Jones, David, Knott, Henry, Kok, Chai Yin, Lau, King Wai, Leroy, Catherine, Lin, Meng-Lay, McBride, David J., Maddison, Mark, Maguire, Simon, McLay, Kirsten, Menzies, Andrew, Mironenko, Tatiana, Mulderrig, Lee, Mudie, Laura, O'Meara, Sarah, Pleasance, Erin, Rajasingham, Aarjunan, Shepherd, Rebecca, Smith, Raffaella, Stebbings, Lucy, Stephens, Philip, Tang, Gurpreet, Tarpey, Patrick S., Turrell, Kelly, Dykema, Karl J., Khoo, Sok Kean, Petillo, David, Wondergem, Bill, Anema, John, Kahnoski, Richard J., Teh, Bin Tean, Stratton, Michael R. and Futreal, P. Andrew (2010) Systematic sequencing of renal carcinoma reveals inactivation of histone modifying genes. Nature, 463 (7279). pp. 360-363. ISSN 1476-4687

Pleasance, Erin D., Cheetham, R. Keira, Stephens, Philip J., McBride, David J., Humphray, Sean J., Greenman, Christopher, Varela, Ignacio, Lin, Meng-Lay, Ordóñez, Gonzalo R., Bignell, Graham R., Ye, Kai, Alipaz, Julie, Bauer, Markus J., Beare, David, Butler, Adam, Carter, Richard J., Chen, Lina, Cox, Anthony J., Edkins, Sarah, Kokko-Gonzales, Paula I., Gormley, Niall A., Grocock, Russell J., Haudenschild, Christian D., Hims, Matthew M., James, Terena, Jia, Mingming, Kingsbury, Zoya, Leroy, Catherine, Marshall, John, Menzies, Andrew, Mudie, Laura J., Ning, Zemin, Royce, Tom, Schulz-Trieglaff, Ole B., Spiridou, Anastassia, Stebbings, Lucy A., Szajkowski, Lukasz, Teague, Jon, Williamson, David, Chin, Lynda, Ross, Mark T., Campbell, Peter J., Bentley, David R., Futreal, P. Andrew and Stratton, Michael R. (2010) A comprehensive catalogue of somatic mutations from a human cancer genome. Nature, 463 (7278). pp. 191-196. ISSN 1476-4687

Pleasance, Erin D., Stephens, Philip J., O’Meara, Sarah, McBride, David J., Meynert, Alison, Jones, David, Lin, Meng-lay, Beare, David, Lau, King Wai, Greenman, Christopher, Varela, Ignacio, Nik-Zainal, Serena, Davies, Helen R., Ordoñez, Gonzalo R., Mudie, Laura J., Latimer, Calli, Edkins, Sarah, Stebbings, Lucy, Chen, Lina, Jia, Mingming, Leroy, Catherine, Marshall, John, Menzies, Andrew, Butler, Adam, Teague, Jon W., Mangion, Jonathon, Sun, Yongming A., Mclaughlin, Stephen F., Peckham, Heather E., Tsung, Eric F., Costa, Gina L., Lee, Clarence C., Minna, John D., Gazdar, Adi, Birney, Ewan, Rhodes, Michael D., Mckernan, Kevin J., Stratton, Michael R., Futreal, P. Andrew and Campbell, Peter J. (2010) A small-cell lung cancer genome with complex signatures of tobacco exposure. Nature, 463 (7278). pp. 184-190. ISSN 1476-4687

Greenman, Chris D., Bignell, Graham, Butler, Adam, Edkins, Sarah, Hinton, Jon, Beare, Dave, Swamy, Sajani, Santarius, Thomas, Chen, Lina, Widaa, Sara, Futreal, P. Andy and Stratton, Michael R. (2010) PICNIC: an algorithm to predict absolute allelic copy number variation with microarray cancer data. Biostatistics, 11 (1). pp. 164-175. ISSN 1465-4644

Stephens, Philip J., McBride, David J., Lin, Meng-Lay, Varela, Ignacio, Pleasance, Erin D., Simpson, Jared T., Stebbings, Lucy A., Leroy, Catherine, Edkins, Sarah, Mudie, Laura J., Greenman, Chris D., Jia, Mingming, Latimer, Calli, Teague, Jon W., Lau, King Wai, Burton, John, Quail, Michael A., Swerdlow, Harold, Churcher, Carol, Natrajan, Rachael, Sieuwerts, Anieta M., Martens, John W. M., Silver, Daniel P., Langerød, Anita, Russnes, Hege E. G., Foekens, John A., Reis-Filho, Jorge S., van 't Veer, Laura, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Campbell, Peter J., Futreal, P. Andrew and Stratton, Michael R. (2009) Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature, 462 (7276). pp. 1005-1010. ISSN 1476-4687

Van Haaften, Gijs, Dalgliesh, Gillian L, Davies, Helen, Chen, Lina, Bignell, Graham, Greenman, Christopher, Edkins, Sarah, Hardy, Claire, O'meara, Sarah, Teague, Jon, Butler, Adam, Hinton, Jonathan, Latimer, Calli, Andrews, Jenny, Barthorpe, Syd, Beare, Dave, Buck, Gemma, Campbell, Peter J, Cole, Jennifer, Forbes, Simon, Jia, Mingming, Jones, David, Kok, Chai Yin, Leroy, Catherine, Lin, Meng-lay, Mcbride, David J, Maddison, Mark, Maquire, Simon, Mclay, Kirsten, Menzies, Andrew, Mironenko, Tatiana, Mulderrig, Lee, Mudie, Laura, Pleasance, Erin, Shepherd, Rebecca, Smith, Raffaella, Stebbings, Lucy, Stephens, Philip, Tang, Gurpreet, Tarpey, Patrick S, Turner, Rachel, Turrell, Kelly, Varian, Jennifer, West, Sofie, Widaa, Sara, Wray, Paul, Collins, V Peter, Ichimura, Koichi, Law, Simon, Wong, John, Yuen, Siu Tsan, Leung, Suet Yi, Tonon, Giovanni, Depinho, Ronald A, Tai, Yu-tzu, Anderson, Kenneth C, Kahnoski, Richard J, Massie, Aaron, Khoo, Sok Kean, Teh, Bin Tean, Stratton, Michael R and Futreal, P Andrew (2009) Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer. Nature Genetics, 41 (5). pp. 521-523. ISSN 1061-4036

Tarpey, Patrick S., Smith, Raffaella, Pleasance, Erin, Whibley, Annabel, Edkins, Sarah, Hardy, Claire, O'Meara, Sarah, Latimer, Calli, Dicks, Ed, Menzies, Andrew, Stephens, Phil, Blow, Matt, Greenman, Christopher, Xue, Yali, Tyler-Smith, Chris, Thompson, Deborah, Gray, Kristian, Andrews, Jenny, Barthorpe, Syd, Buck, Gemma, Cole, Jennifer, Dunmore, Rebecca, Jones, David, Maddison, Mark, Mironenko, Tatiana, Turner, Rachel, Turrell, Kelly, Varian, Jennifer, West, Sofie, Widaa, Sara, Wray, Paul, Teague, Jon, Butler, Adam, Jenkinson, Andrew, Jia, Mingming, Richardson, David ORCID: https://orcid.org/0000-0001-7226-9074, Shepherd, Rebecca, Wooster, Richard, Tejada, M. Isabel, Martinez, Francisco, Carvill, Gemma, Goliath, Rene, de Brouwer, Arjan P. M., van Bokhoven, Hans, van Esch, Hilde, Chelly, Jamel, Raynaud, Martine, Ropers, Hans-Hilger, Abidi, Fatima E., Srivastava, Anand K., Cox, James, Luo, Ying, Mallya, Uma, Moon, Jenny, Parnau, Josef, Mohammed, Shehla, Tolmie, John L., Shoubridge, Cheryl, Corbett, Mark, Gardner, Alison, Haan, Eric, Rujirabanjerd, Sinitdhorn, Shaw, Marie, Vandeleur, Lucianne, Fullston, Tod, Easton, Douglas F., Boyle, Jackie, Partington, Michael, Hackett, Anna, Field, Michael, Skinner, Cindy, Stevenson, Roger E., Bobrow, Martin, Turner, Gillian, Schwartz, Charles E., Gecz, Jozef, Raymond, F. Lucy, Futreal, P. Andrew and Stratton, Michael R. (2009) A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. Nature Genetics, 41 (5). pp. 535-543. ISSN 1061-4036

Mahoney, C L, Choudhury, B, Davies, H, Edkins, S, Greenman, C, Haaften, G Van, Mironenko, T, Santarius, T, Stevens, C, Stratton, M R and Futreal, P A (2009) LKB1/KRAS mutant lung cancers constitute a genetic subset of NSCLC with increased sensitivity to MAPK and mTOR signalling inhibition. British Journal of Cancer, 100 (2). pp. 370-375. ISSN 1532-1827

Bignell, Graham R., Santarius, Thomas, Pole, Jessica C. M., Butler, Adam P., Perry, Janet, Pleasance, Erin, Greenman, Chris, Menzies, Andrew, Taylor, Sheila, Edkins, Sarah, Campbell, Peter, Quail, Michael, Plumb, Bob, Matthews, Lucy, McLay, Kirsten, Edwards, Paul A. W., Rogers, Jane, Wooster, Richard, Futreal, P. Andrew and Stratton, Michael R. (2007) Architectures of somatic genomic rearrangement in human cancer amplicons at sequence-level resolution. Genome Research, 17 (9). pp. 1296-1303. ISSN 1088-9051

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Unpublished

Fotso-Chedom, Donatien, Murcia, Pablo R. and Greenman, Christopher (2015) Inferring the Clonal Structure of Viral Populations from Time Series Sequencing (Under Review: PLOS Comp Biol). (Unpublished)