Items where Research Group is "Plant Sciences

Dalmay, Tamas, ed. (2017) MicroRNA Detection and Target Identification:Methods and Protocols. Methods in Molecular Biology (1). Humana Press. ISBN 978-1-4939-6864-0

Bastow, Emma L., Bych, Katrine, Crack, Jason C., Le Brun, Nick E. ORCID: https://orcid.org/0000-0001-9780-4061 and Balk, Janneke (2017) NBP35 interacts with DRE2 in the maturation of cytosolic iron-sulfur proteins in Arabidopsis thaliana. The Plant Journal, 89 (3). 590–600. ISSN 0960-7412

Beckers, Matthew, Mohorianu, Irina-Ioana, Stocks, Matthew, Applegate, Christopher, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2017) Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench. RNA, 23 (6). pp. 823-835. ISSN 1355-8382

Belhaj, Khaoula, Cano, Liliana M, Prince, David C, Kemen, Ariane, Yoshida, Kentaro, Dagdas, Yasin F, Etherington, Graham J, Schoonbeek, Henk-Jan, van Esse, H Peter, Jones, Jonathan D G, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Schornack, Sebastian (2017) Arabidopsis late blight:Infection of a nonhost plant by Albugo laibachii enables full colonization by Phytophthora infestans. Cellular Microbiology, 19 (1). ISSN 1462-5814

Bender, Kyle W, Blackburn, R Kevin, Monaghan, Jacqueline, Derbyshire, Paul, Menke, Frank LH ORCID: https://orcid.org/0000-0003-2490-4824, Zipfel, Cyril, Goshe, Michael B, Zielinski, Raymond E and Huber, Steven C (2017) Autophosphorylation-based calcium (Ca2+) sensitivity priming and Ca2+/Calmodulin inhibition of Arabidopsis thaliana Ca2+-dependent protein kinase 28 (CPK28). The Journal of Biological Chemistry, 292 (10). pp. 3988-4002. ISSN 0021-9258

Białas, Aleksandra, Zess, Erin K., De la Concepcion, Juan Carlos, Franceschetti, Marina, Pennington, Helen G., Yoshida, Kentaro, Upson, Jessica L., Chanclud, Emilie, Wu, Chih-Hang, Langner, Thorsten, Maqbool, Abbas, Varden, Freya A., Derevnina, Lida, Belhaj, Khaoula, Fujisaki, Koki, Saitoh, Hiromasa, Terauchi, Ryohei, Banfield, Mark J. and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2017) Lessons in effector and NLR biology of plant-microbe systems. Molecular Plant-Microbe Interactions, 31 (1). pp. 34-45. ISSN 0894-0282

Boschi, Federico, Schvartzman, Claudia, Murchio, Sara, Ferreira, Virginia, Siri, Maria I., Galván, Guillermo A., Smoker, Matthew, Stansfeld, Lena, Zipfel, Cyril, Vilaró, Francisco L. and Dalla-Rizza, Marco (2017) Enhanced bacterial wilt resistance in potato through expression of Arabidopsis EFR and introgression of quantitative resistance from Solanum commersonii. Frontiers in Plant Science, 8. ISSN 1664-462X

Boutrot, Freddy and Zipfel, Cyril (2017) Function, discovery, and exploitation of plant pattern recognition receptors for broad-spectrum disease resistance. Annual Review of Phytopathology, 55. pp. 257-286. ISSN 0066-4286

Bradley, Desmond, Xu, Ping, Mohorianu, Irina-Ioana, Whibley, Annabel, Field, David, Tavares, Hugo, Couchman, Matthew, Copsey, Lucy, Carpenter, Rosemary, Li, Miaomiao, Li, Qun, Xue, Yongbiao, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Coen, Enrico (2017) Evolution of flower color pattern through selection on regulatory small RNAs. Science, 358 (6365). pp. 925-928. ISSN 0036-8075

Bücherl, Christoph A, Jarsch, Iris Katharina, Schudoma, Christian, Segonzac, Cécile, Mbengue, Malick, Robatzek, Silke, MacLean, Daniel, Ott, Thomas and Zipfel, Cyril (2017) Plant immune and growth receptors share common signalling components but localise to distinct plasma membrane nanodomains. eLife, 6. ISSN 2050-084X

Collins, David H., Mohorianu, Irina, Beckers, Matthew, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Bourke, Andrew F. G. ORCID: https://orcid.org/0000-0001-5891-8816 (2017) MicroRNAs associated with caste determination and differentiation in a primitively eusocial insect. Scientific Reports, 7. ISSN 2045-2322

Connorton, James M., Balk, Janneke and Rodriguez Celma, Jorge (2017) Iron homeostasis in plants - a brief overview. Metallomics, 9 (7). pp. 813-823. ISSN 1756-5901

Connorton, James M., Jones, Eleanor R., Rodriguez-Ramiro, Ildefonso, Fairweather-Tait, Susan ORCID: https://orcid.org/0000-0002-1413-5569, Uauy, Cristobal and Balk, Janneke (2017) Wheat vacuolar iron transporter TaVIT2 transports Fe and Mn and is effective for biofortification. Plant Physiology, 174 (4). pp. 2434-2444. ISSN 0032-0889

D'Ambrosio, Juan Martín, Couto, Daniel, Fabro, Georgina, Scuffi, Denise, Lamattina, Lorenzo, Munnik, Teun, Andersson, Mats X., Álvarez, María E., Zipfel, Cyril and Laxalt, Ana M. (2017) Phospholipase C2 affects MAMP-triggered immunity by modulating ROS production. Plant Physiology, 175 (2). pp. 970-981. ISSN 0032-0889

Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2017) Plant gene silencing:Mechanisms and applications. CABI International. ISBN 978-178064767-8

Darrington, Michael, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Morrison, Neil I. and Chapman, Tracey (2017) Implementing the sterile insect technique with RNA interference – a review. Entomologia Experimentalis et Applicata, 164 (3). 155–175. ISSN 0013-8703

Faulkner, Christine, Zhou, Ji, Evrard, Alexandre, Bourdais, Gildas, MacLean, Dan, Häweker, Heidrun, Eckes, Peter and Robatzek, Silke (2017) An automated quantitative image analysis tool for the identification of microtubule patterns in plants. Traffic, 18 (10). 683–693. ISSN 1398-9219

Franceschetti, Marina, Maqbool, Abbas, Jiménez-Dalmaroni, Maximiliano J., Pennington, Helen G., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Banfield, Mark J. (2017) Effectors of filamentous plant pathogens: Commonalities amid diversity. Microbiology and Molecular Biology Reviews, 81 (2). ISSN 1092-2172

Franco-Echevarría, Elsa, Sanz-Aparicio, Julia, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109, González-Rubio, Juana M. and González, Beatriz (2017) The crystal structure of mammalian inositol 1,3,4,5,6-pentakisphosphate 2-kinase reveals a new zinc-binding site and key features for protein function. The Journal of Biological Chemistry, 292 (25). pp. 10534-10548. ISSN 0021-9258

Giolai, Michael, Paajanen, Pirita, Verweij, Walter, Witek, Kamil, Jones, Jonathan D. G. and Clark, Matthew D. (2017) Comparative analysis of targeted long read sequencing approaches for characterization of a plant’s immune receptor repertoire. BMC Genomics, 18. ISSN 1471-2164

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Mohorianu, Irina, McNamara, Iain, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William D. (2017) miR-16 is highly expressed in Paget’s associated osteosarcoma. Endocrine-Related Cancer (ERC), 24 (5). L27-L31. ISSN 1351-0088

Green, Darrell ORCID: https://orcid.org/0000-0002-0217-3322, Mohorianu, Irina, Piec, Isabelle ORCID: https://orcid.org/0000-0002-0648-1330, Turner, Jeremy, Beadsmoore, Clare, Toms, Andoni, Ball, Richard, Nolan, John, McNamara, Iain, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Fraser, William D (2017) MicroRNA expression in a phosphaturic mesenchymal tumour. Bone Reports, 7. 63–69. ISSN 2352-1872

Huh, Sung Un, Cevik, Volkan, Ding, Pingtao, Duxbury, Zane, Ma, Yan, Sarris, Panagiotis F. and Jones, Jonathan (2017) Protein-protein interactions in the RPS4/RRS1 immune receptor complex. PLoS Pathogens, 13 (5). ISSN 1553-7374

Illana, Adriana, Marconi, Marco, Rodríguez-Romero, Julio, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Wilkinson, Mark D., Ayllón, Maria Ángeles and Sesma, Ane ORCID: https://orcid.org/0000-0003-3982-8932 (2017) Molecular characterization of a novel ssRNA ourmia-like virus from the rice blast fungus Magnaporthe oryzae. Archives of Virology, 162 (3). 891–895. ISSN 0304-8608

Imkampe, Julia, Halter, Thierry, Huang, Shuhua, Schulze, Sarina, Mazzotta, Sara, Schmidt, Nikola, Manstretta, Raffaele, Postel, Sandra, Wierzba, Michael, Yang, Yong, van Dongen, Walter M. A. M., Stahl, Mark, Zipfel, Cyril, Goshe, Michael B., Clouse, Steven, de Vries, Sacco C., Tax, Frans, Wang, Xiaofeng and Kemmerling, Birgit (2017) The Arabidopsis leucine-rich repeat receptor kinase BIR3 negatively regulates BAK1 receptor complex formation and stabilizes BAK1. The Plant Cell, 29 (9). pp. 2285-2303. ISSN 1040-4651

Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2017) Can a biologist fix a smartphone?—Just hack it! BMC Biology, 15. ISSN 1741-7007

Kellner, Ronny, De La Concepcion, Juan Carlos, Maqbool, Abbas, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Dagdas, Yasin F. (2017) ATG8 expansion: A driver of selective autophagy diversification? Trends in Plant Science, 22 (3). pp. 204-214. ISSN 1360-1385

Kobayashi, Michie, Hiraka, Yukie, Abe, Akira, Yaegashi, Hiroki, Natsume, Satoshi, Kikuchi, Hideko, Takagi, Hiroki, Saitoh, Hiromasa, Win, Joe, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Terauchi, Ryohei (2017) Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews. BMC Genomics, 18. ISSN 1471-2164

Mathers, Thomas C., Chen, Yazhou, Kaithakottil, Gemy, Legeai, Fabrice, Mugford, Sam T., Baa-Puyoulet, Patrice, Bretaudeau, Anthony, Clavijo, Bernardo, Colella, Stefano, Collin, Olivier, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Derrien, Thomas, Feng, Honglin, Gabaldón, Toni, Jordan, Anna, Julca, Irene, Kettles, Graeme J., Kowitwanich, Krissana, Lavenier, Dominique, Lenzi, Paolo, Lopez-Gomollon, Sara, Loska, Damian, Mapleson, Daniel, Maumus, Florian, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Price, Daniel R. G., Sugio, Akiko, van Munster, Manuella, Uzest, Marilyne, Waite, Darren, Jander, Georg, Tagu, Denis, Wilson, Alex C. C., van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Swarbreck, David and Hogenhout, Saskia A. (2017) Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species. Genome Biology, 18. ISSN 1474-760X

Mendy, Badou, Wang’ombe, Mary Wanjiku, Radakovic, Zoran, Holbein, Julia, Ilyas, Muhammad, Chopra, Divykriti, Holton, Nick, Zipfel, Cyril, Grundler, Florian and Siddique, Shahid (2017) Arabidopsis leucine-rich repeat receptor–like kinase NILR1 is required for induction of innate immunity to parasitic nematodes. PLoS Pathogens, 13 (4). ISSN 1553-7374

Michelmore, Richard, Coaker, Gitta, Bart, Rebecca, Beattie, Gwyn, Bent, Andrew, Bruce, Toby, Cameron, Duncan, Dangl, Jeffery, Dinesh-Kumar, Savithramma, Edwards, Rob, Eves-van Den Akker, Sebastian, Gassmann, Walter, Greenberg, Jean T., Hanley-Bowdoin, Linda, Harrison, Richard J., Harvey, Jagger, He, Ping, Huffaker, Alisa, Hulbert, Scot, Innes, Roger, Jones, Jonathan D. G., Kaloshian, Isgouhi, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Katagiri, Fumiaki, Leach, Jan, Ma, Wenbo, McDowell, John, Medford, June, Meyers, Blake, Nelson, Rebecca, Oliver, Richard, Qi, Yiping, Saunders, Diane, Shaw, Michael, Smart, Christine, Subudhi, Prasanta, Torrance, Lesley, Tyler, Bret, Valent, Barbara and Walsh, John (2017) Foundational and translational research opportunities to improve plant health. Molecular Plant-Microbe Interactions, 30 (7). pp. 515-516. ISSN 0894-0282

Mohorianu, Irina, Bretman, Amanda, Smith, Damian T., Fowler, Emily K., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2017) Comparison of alternative approaches for analysing multi-level RNA-seq data. PLoS One, 12 (8). ISSN 1932-6203

Mohorianu, Irina, Bretman, Amanda, Smith, Damian T., Fowler, Emily K., Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Chapman, Tracey (2017) Genomic responses to socio-sexual environment in male Drosophila melanogaster exposed to conspecific rivals. RNA, 2017 (23). pp. 1048-1059. ISSN 1355-8382

Neal, Andrew L., Rossmann, Maike, Brearley, Charles ORCID: https://orcid.org/0000-0001-6179-9109, Akkari, Elsy, Guyomar, Cervin, Clark, Ian M., Allen, Elisa and Hirsch, Penny R. (2017) Land-use influences phosphatase gene microdiversity in soils. Environmental Microbiology, 19 (7). 2740–2753. ISSN 1462-2912

Nekrasov, Vladimir, Wang, Congmao, Win, Joe, Lanz, Christa, Weigel, Detlef and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2017) Rapid generation of a transgene-free powdery mildew resistant tomato by genome deletion. Scientific Reports, 7. ISSN 2045-2322

Omidvar, Vahid, Mohorianu, Irina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Zheng, Yi, Fei, Zhangjun, Pucci, Anna, Mazzucato, Andrea, Večeřová, Vendula, Sedlářova, Michaela and Fellner, Martin (2017) Transcriptional regulation of male-sterility in 7B-1 male-sterile tomato mutant. PLoS One, 12 (2). ISSN 1932-6203

Paicu, Claudia, Mohorianu, Irina-Ioana, Stocks, Matthew, Xu, Ping, Coince, Aurore, Billmeier, Martina, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 (2017) miRCat2: Accurate prediction of plant and animal microRNAs from next-generation sequencing datasets. Bioinformatics, 33 (16). 2446–2454. ISSN 1367-4803

Petre, Benjamin, Win, Joe, Menke, Frank L H ORCID: https://orcid.org/0000-0003-2490-4824 and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2017) Protein-Protein Interaction Assays with Effector-GFP Fusions in Nicotiana benthamiana. In: Wheat Rust Diseases. Methods in Molecular Biology . Humana Press, pp. 85-98. ISBN 978-1-4939-7248-7

Prince, David C., Rallapalli, Ghanasyam, Xu, Deyang, Schoonbeek, Henk-jan, Çevik, Volkan, Asai, Shuta, Kemen, Eric, Cruz-Mireles, Neftaly, Kemen, Ariane, Belhaj, Khaoula, Schornack, Sebastian, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Holub, Eric B., Halkier, Barbara A. and Jones, Jonathan D. G. (2017) Albugo-imposed changes to tryptophan-derived antimicrobial metabolite biosynthesis may contribute to suppression of non-host resistance to Phytophthora infestans in Arabidopsis thaliana. BMC Biology, 15. ISSN 1741-7007

Rodriguez-Ramiro, I., Brearley, C.A. ORCID: https://orcid.org/0000-0001-6179-9109, Bruggraber, S.F.A., Perfecto, A., Shewry, P. and Fairweather-Tait, S. ORCID: https://orcid.org/0000-0002-1413-5569 (2017) Assessment of iron bioavailability from different bread making processes using an in vitro intestinal cell model. Food Chemistry, 228. 91–98. ISSN 0308-8146

Shubchynskyy, Volodymyr, Boniecka, Justyna, Schweighofer, Alois, Simulis, Justinas, Kvederaviciute, Kotryna, Stumpe, Michael, Mauch, Felix, Balazadeh, Salma, Mueller-Roeber, Bernd, Boutrot, Freddy, Zipfel, Cyril and Meskiene, Irute (2017) Protein phosphatase AP2C1 negatively regulates basal resistance and defense responses to Pseudomonas syringae. Journal of Experimental Botany, 68 (5). pp. 1169-1183. ISSN 0022-0957

Singh, Vijayata, Perraki, Artemis, Kim, Sang Yeol, Shrivastava, Stuti, Lee, Jae Hoon, Zhao, Youfu, Schwessinger, Benjamin, Oh, Man-Ho, Marshall-Colon, Amy, Zipfel, Cyril and Huber, Steven C (2017) Tyrosine-610 in the receptor kinase BAK1 does not play a major role in brassinosteroid signaling or innate immunity. Frontiers in Plant Science, 8. ISSN 1664-462X

Stegmann, Martin, Monaghan, Jacqueline, Smakowska-Luzan, Elwira, Rovenich, Hanna, Lehner, Anita, Holton, Nicholas, Belkhadir, Youssef and Zipfel, Cyril (2017) The receptor kinase FER is a RALF-regulated scaffold controlling plant immune signaling. Science, 355 (6322). pp. 287-289. ISSN 0036-8075

Tamiru, Muluneh, Natsume, Satoshi, Takagi, Hiroki, White, Benjamen, Yaegashi, Hiroki, Shimizu, Motoki, Yoshida, Kentaro, Uemura, Aiko, Oikawa, Kaori, Abe, Akira, Urasaki, Naoya, Matsumura, Hideo, Babil, Pachakkil, Yamanaka, Shinsuke, Matsumoto, Ryo, Muranaka, Satoru, Girma, Gezahegn, Lopez-Montes, Antonio, Gedil, Melaku, Bhattacharjee, Ranjana, Abberton, Michael, Kumar, P Lava, Rabbi, Ismail, Tsujimura, Mai, Terachi, Toru, Haerty, Wilfried, Corpas, Manuel, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Kahl, Günter, Takagi, Hiroko, Asiedu, Robert and Terauchi, Ryohei (2017) Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC Biology, 15. ISSN 1741-7007

Wu, Chih-Hang, Abd-El-Haliem, Ahmed, Bozkurt, Tolga O., Belhaj, Khaoula, Terauchi, Ryohei, Vossen, Jack H. and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2017) NLR network mediates immunity to diverse plant pathogens. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 114 (30). 8113–8118. ISSN 0027-8424

Yu, Guotai, Champouret, Nicolas, Steuernagel, Burkhard, Olivera, Pablo D., Simmons, Jamie, Williams, Cole, Johnson, Ryan, Moscou, Matthew J. ORCID: https://orcid.org/0000-0003-2098-6818, Hernández-Pinzón, Inmaculada, Green, Phon, Sela, Hanan, Millet, Eitan, Jones, Jonathan D. G., Ward, Eric R., Steffenson, Brian J. and Wulff, Brande B. H. (2017) Discovery and characterization of two new stem rust resistance genes in Aegilops sharonensis. Theoretical and Applied Genetics, 130 (6). 1207–1222. ISSN 0040-5752

Zipfel, Cyril and Oldroyd, Giles E.D. (2017) Plant signalling in symbiosis and immunity. Nature, 543. 328–336. ISSN 0028-0836

de Azevedo Souza,, Clarice, Li, Shundai, Lin, Andrew Z., Boutrot, Freddy, Grossman, Guido, Zipfel, Cyril and Somerville, Shauna C (2017) Cellulose-derived oligomers act as damage-associated molecular patterns and trigger defense-like responses. Plant Physiology, 173 (4). pp. 2383-2398. ISSN 0032-0889

van der Does, Dieuwertje, Boutrot, Freddy, Engelsdorf, Timo, Rhodes, Jack, McKenna, Joseph F., Vernhettes, Samantha, Koevoets, Iko, Tintor, Nico, Veerabagu, Manikandan, Miedes, Eva, Segonzac, Cécile, Roux, Milena, Breda, Alice S., Hardtke, Christian S., Molina, Antonio, Rep, Martijn, Testerink, Christa, Mouille, Grégory, Höfte, Herman, Hamann, Thorsten and Zipfel, Cyril (2017) The Arabidopsis leucine-rich repeat receptor kinase MIK2/LRR-KISS connects cell wall integrity sensing, root growth and response to abiotic and biotic stresses. PLoS Genetics, 13 (6). ISSN 1553-7390

Özkan, Selin, Mohorianu, Irina, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Coutts, Robert H. A. (2017) Profile and functional analysis of small RNAs derived from Aspergillus fumigatus infected with double-stranded RNA mycoviruses. BMC Genomics, 18. ISSN 1471-2164