Items where Research Group is "Environmental Biology

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Avrahami, Sharon, Jia, Zhongjun, Neufeld, Josh D., Murrell, J. Colin, Conrad, Ralf and Küsel, Kirsten (2011) Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation. Applied and Environmental Microbiology, 77 (20). pp. 7329-7338. ISSN 0099-2240

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Boden, Rich, Borodina, Elena, Wood, Ann P., Kelly, Donovan P., Murrell, J. Colin and Schafer, Hendrik (2011) Purification and characterization of dimethylsulfide monooxygenase from Hyphomicrobium sulfonivorans. Journal of Bacteriology, 193 (5). pp. 1250-1258. ISSN 0021-9193

Boden, Rich, Ferriera, Steve, Johnson, Justin, Kelly, Donovan P., Murrell, J. Colin and Schafer, Hendrik (2011) Draft Genome Sequence of the Chemolithoheterotrophic, Halophilic Methylotroph Methylophaga thiooxydans DMS010. Journal of Bacteriology, 193 (12). pp. 3154-3155. ISSN 0021-9193

Boden, Rich and Murrell, J. Colin (2011) Response to mercury (II) ions in Methylococcus capsulatus (Bath). FEMS Microbiology Letters, 324 (2). pp. 106-110. ISSN 0378-1097

Boden, Rich, Murrell, J. Colin and Schäfer, Hendrik (2011) Dimethylsulfide is an energy source for the heterotrophic marine bacterium Sagittula stellata. FEMS Microbiology Letters, 322 (2). pp. 188-193. ISSN 1574-6968

Boughey, Katherine L., Lake, Iain R. ORCID: https://orcid.org/0000-0003-4407-5357, Haysom, Karen A. and Dolman, Paul M. ORCID: https://orcid.org/0000-0002-9340-2791 (2011) Effects of landscape-scale broadleaved woodland configuration and extent on roost location for six bat species across the UK. Biological Conservation, 144 (9). pp. 2300-2310.

Boughey, Katherine L., Lake, Iain R. ORCID: https://orcid.org/0000-0003-4407-5357, Haysom, Karen A. and Dolman, Paul M. ORCID: https://orcid.org/0000-0002-9340-2791 (2011) Improving the biodiversity benefits of hedgerows: How physical characteristics and the proximity of foraging habitat affect the use of linear features by bats. Biological Conservation, 144 (6). pp. 1790-1798.

Breckels, Mark N., Roberts, Emily C., Archer, Stephen D., Malin, Gill ORCID: https://orcid.org/0000-0002-3639-9215 and Steinke, Michael (2011) The role of dissolved infochemicals in mediating predator-prey interactions in the heterotrophic dinoflagellate Oxyrrhis marina. Journal of Plankton Research, 33 (4). pp. 629-639. ISSN 0142-7873

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Catry, Inês, Dias, Maria P., Catry, Teresa, Afanasyev, Vsevolod, Fox, James, Franco, Aldina M. A. ORCID: https://orcid.org/0000-0001-6055-7378 and Sutherland, William J. (2011) Individual variation in migratory movements and winter behaviour of Iberian Lesser Kestrels Falco naumanni reveaed by geolocators. Ibis, 153 (1). pp. 154-164. ISSN 1474-919X

Catry, Inês, Franco, Aldina M. A. ORCID: https://orcid.org/0000-0001-6055-7378 and Sutherland, William J. (2011) Adapting conservation efforts to face climate change: Modifying nest-site provisioning for lesser kestrels. Biological Conservation, 144 (3). pp. 1111-1119.

Chen, Y, Dumont, MG, Neufeld, JD, McNamara, NP and Murrell, JC (2011) Towards “Focused” Metagenomics:A Case Study Combining DNA Stable-Isotope Probing, Multiple Displacement Amplification, and Metagenomics. In: Handbook of Molecular Microbial Ecology I. Wiley, New Jersey, USA.

Chen, Yin, Neufeld, Josh D., Dumont, Marc G., Friedrich, Michael W. and Murrell, J. Colin (2011) Metagenomic analysis of isotopically labelled DNA. In: Metagenomics: Methods and Protocols. Methods in Molecular Biology . Humana Press, NJ, USA, pp. 67-75. ISBN 978-1-60761-822-5

Chen, Yin, Patel, Nisha A., Crombie, Andrew, Scrivens, James H. and Murrell, J. Colin (2011) Bacterial flavin-containing monooxygenase is trimethylamine monooxygenase. Proceedings of the National Academy of Sciences, 108 (43). pp. 17791-17796. ISSN 0027-8424

Chen, Y, Kumaresan, D and Murrell, JC (2011) Stable isotope probing and its applications in soil microbiology. In: Handbook of Soil Science (2nd Edition). CRC Press, pp. 30-38. ISBN 978-0-8493-3136-7

Crombie, Andrew and Murrell, J. Colin (2011) Development of a System for Genetic Manipulation of the Facultative Methanotroph Methylocella silvestris BL2. In: Methods in Enzymology. Methods in Enzymology, 495 . Elsevier, pp. 119-133.

Cunliffe, Michael, Upstill-Goddard, Robert C. and Murrell, J. Colin (2011) Microbiology of aquatic surface microlayers. FEMS Microbiology Reviews, 35 (2). pp. 233-246. ISSN 1574-6976

Curson, Andrew R. J., Sullivan, Matthew J. ORCID: https://orcid.org/0000-0003-2276-3132, Todd, Jonathan D. and Johnston, Andrew W. B. (2011) DddY, a periplasmic dimethylsulfoniopropionate lyase found in taxonomically diverse species of Proteobacteria. The ISME Journal, 5 (7). pp. 1191-1200. ISSN 1751-7362

Curson, Andrew R. J., Todd, Jonathan D., Sullivan, Matthew J. ORCID: https://orcid.org/0000-0003-2276-3132 and Johnston, Andrew W. B. (2011) Catabolism of dimethylsulphoniopropionate: microorganisms, enzymes and genes. Nature Reviews Microbiology, 9 (12). pp. 849-859. ISSN 1740-1526

Cébron, Aurélie, Louvel, Brice, Faure, Pierre, France-Lanord, Christian, Chen, Yin, Murrell, J. Colin and Leyval, Corinne (2011) Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates. Environmental Microbiology, 13 (3). pp. 722-736. ISSN 1462-2920

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Davy, Anthony J. ORCID: https://orcid.org/0000-0002-7658-7106, Brown, Michael J. H., Mossman, Hannah L. and Grant, Alastair ORCID: https://orcid.org/0000-0002-1147-2375 (2011) Colonization of a newly developing salt marsh: disentangling independent effects of elevation and redox potential on halophytes. Journal of Ecology, 99 (6). pp. 1350-1357. ISSN 0022-0477

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Gibson, Luke, Lee, Tien Ming, Koh, Lian Pin, Brook, Barry W., Gardner, Toby A., Barlow, Jos, Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765, Bradshaw, Corey J. A., Laurance, William F., Lovejoy, Thomas E. and Sodhi, Navjot S. (2011) Primary forests are irreplaceable for sustaining tropical biodiversity. Nature, 478. pp. 378-381. ISSN 0028-0836

Gilroy, J.J. ORCID: https://orcid.org/0000-0002-7597-5780, Anderson, G.Q.A., Vickery, J.A., Grice, P.V. and Sutherland, W.J. (2011) Identifying mismatches between habitat selection and habitat quality in a ground-nesting farmland bird. Animal Conservation, 14 (6). pp. 620-629. ISSN 1367-9430

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Herrera-Pantoja, M., Hiscock, K. M. ORCID: https://orcid.org/0000-0003-4505-1496 and Boar, R. R. (2011) The potential impact of climate change on groundwater-fed wetlands in eastern England. Ecohydrology, 5 (4). pp. 401-413. ISSN 1936-0592

Holt, Chas A., Fuller, Robert J. and Dolman, Paul M. ORCID: https://orcid.org/0000-0002-9340-2791 (2011) Breeding and post-breeding responses of woodland birds to modification of habitat structure by deer. Biological Conservation, 144 (9). pp. 2151-2162.

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Jiao, Nianzhi, Robinson, Carol ORCID: https://orcid.org/0000-0003-3033-4565 and Kattner, Gerhard (2011) The microbial carbon pump: Emerging issues workshop report. ASLO Bulletin, 20 (2). pp. 37-38.

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Kumaresan, Deepak, Héry, Marina, Bodrossy, Levente, Singer, Andrew C., Stralis-Pavese, Nancy, Thompson, Ian P. and Murrell, J. Colin (2011) Earthworm activity in a simulated landfill cover soil shifts the community composition of active methanotrophs. Research in Microbiology, 162 (10). pp. 1027-1032. ISSN 1769-7123

Kumaresan, Deepak, Stralis-Pavese, Nancy, Abell, Guy C. J., Bodrossy, Levente and Murrell, J. Colin (2011) Physical disturbance to ecological niches created by soil structure alters community composition of methanotrophs. Environmental Microbiology Reports, 3 (5). pp. 613-621. ISSN 1758-2229

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Latawiec, A. E., Swindell, A. L., Simmons, P. and Reid, B. J. ORCID: https://orcid.org/0000-0002-9613-979X (2011) Bringing bioavailability into contaminated land decision making: The way forward? Critical Reviews in Environmental Science and Technology, 41 (1). pp. 52-77. ISSN 1064-3389

Levi, Taal, Shepard, Glenn H., Ohl-Schacherer, Julia, Wilmers, Christopher C., Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 and Yu, Douglas W. (2011) Spatial tools for assessing the sustainability of subsistence hunting in tropical forests. Ecological Applications, 21 (5). pp. 1802-1818. ISSN 1051-0761

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Maclean, Ilya M. D., Boar, Rosalind R. and Lugo, Charles (2011) A review of the relative merits of conserving, using, or draining papyrus swamps. Environmental Management, 47. pp. 218-229.

Maclean, Ilya M. D., Wilson, Robert J. and Hassall, Mark (2011) Predicting changes in the abundance of African wetland birds by incorporating abundance-occupancy relationships into habitat association models. Diversity and Distributions, 17 (3). pp. 480-490. ISSN 1472-4642

Michalski, Fernanda, Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 and Metzger, Jean Paul (2011) Predicting the spatial distribution of four sympatric species of mid-sized carnivores in an Amazonian deforestation frontier. In: Middle-Sized Carnivores in Agricultural Landscapes. Nova Science Publishers, Inc, pp. 127-142. ISBN 9781611220339

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Nazaries, Loïc, Tate, Kevin R., Ross, Des J., Singh, Jagrati, Dando, John, Saggar, Surinder, Baggs, Elizabeth M., Millard, Peter, Murrell, J. Colin and Singh, Brajesh K. (2011) Response of methanotrophic communities to afforestation and reforestation in New Zealand. The ISME Journal, 5 (11). pp. 1832-1836. ISSN 1751-7362

Newton, Peter, Endo, Whaldener and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2011) Determinants of livelihood strategy variation in two extractive reserves in Amazonian flooded and unflooded forests. Environmental Conservation, 39 (2). pp. 97-110. ISSN 0376-8929

Newton, Peter, Watkinson, Andrew R. and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2011) Determinants of yield in a non-timber forest product: Copaifera oleoresin in Amazonian extractive reserves. Forest Ecology and Management, 261 (2). pp. 255-264.

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Palminteri, Suzanne, Powell, George, Endo, Whaldener, Kirkby, Chris, Yu, Douglas and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2011) Usefulness of species range polygons for predicting local primate occurrences in southeastern Peru. American Journal of Primatology (73). pp. 53-61. ISSN 0275-2565

Palminteri, Suzanne, Powell, George V.N. and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2011) Regional-scale heterogeneity in primate community structure at multiple undisturbed forest sites across south-eastern Peru. Journal of Tropical Ecology, 27 (2). pp. 181-194. ISSN 0266-4674

Peres, CA ORCID: https://orcid.org/0000-0002-1588-8765 and Cunha, A (2011) Line-Transect Censuses of Large-Bodied Tropical Forest Vertebrates: A Handbook. Wildlife Conservation Society, Brasília, Brazil [in Portuguese]. Wildlife Conservation Society, Brasília, Brazil.

Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2011) Conservation in sustainable-use tropical forest reserves. Conservation Biology, 25 (6). pp. 1124-1129. ISSN 1523-1739

Perrow, M.R., Gilroy, J.J. ORCID: https://orcid.org/0000-0002-7597-5780, Skeate, E.R. and Tomlinson, M.L. (2011) Effects of the construction of Scroby Sands offshore wind farm on the prey base of Little tern Sternula albifrons at its most important UK colony. Marine Pollution Bulletin, 62 (8). pp. 1661-1670. ISSN 0025-326X

Perrow, Martin R., Skeate, Eleanor R. and Gilroy, James J. ORCID: https://orcid.org/0000-0002-7597-5780 (2011) El seguimiento visual desde un bote inflable de casco rigido para determinar los movimientos de forrajeo de gaviotas en estado reproductivo. Journal of Field Ornithology, 82 (1). pp. 68-79. ISSN 0273-8570

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Rahman, M. Tanvir, Crombie, Andrew, Moussard, Hélène, Chen, Yin and Murrell, J. Colin (2011) Acetate repression of methane oxidation by supplemental Methylocella silvestris in a peat soil microcosm. Applied and Environmental Microbiology, 77 (12). pp. 4234-4236. ISSN 0099-2240

Rahman, Md Tanvir, Crombie, Andrew, Chen, Yin, Stralis-Pavese, Nancy, Bodrossy, Levente, Meir, Patrick, McNamara, Niall P. and Murrell, J. Colin (2011) Environmental distribution and abundance of the facultative methanotroph Methylocella. The ISME Journal, 5 (6). pp. 1061-1066. ISSN 1751-7362

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Santangeli, Andrea and Dolman, Paul M. ORCID: https://orcid.org/0000-0002-9340-2791 (2011) Density and habitat prefereces of male little bustard across contrasting agro-pastoral landscapes in Sardinia (Italy). European Journal of Wildlife Research, 57 (4). pp. 805-815. ISSN 1612-4642

Smith, T. J. and Murrell, J. C. (2011) Methanotrophs. In: Encyclopaedia of Industrial Biotechnology:. Wiley, pp. 1-13. ISBN 9780471799306

Smith, TJ and Murrell, JC (2011) Genetic mutagenesis of soluble methane monooxygenase. In: Methods in Enzymology 495 (Methods in Methane Metabolism). Elsevier, pp. 135-147.

Sullivan, Matthew J. ORCID: https://orcid.org/0000-0003-2276-3132, Curson, Andrew R. J., Shearer, Neil, Todd, Jonathan D., Green, Robert T. and Johnston, Andrew W. B. (2011) Unusual regulation of a leaderless operon involved in the catabolism of dimethylsulfoniopropionate in Rhodobacter sphaeroides. PLoS One, 6 (1). ISSN 1932-6203

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Todd, Jonathan D., Curson, Andrew R. J., Kirkwood, Mark, Sullivan, Matthew J. ORCID: https://orcid.org/0000-0003-2276-3132, Green, Robert T. and Johnston, Andrew W. B. (2011) DddQ, a novel, cupin-containing, dimethylsulfoniopropionate lyase in marine roseobacters and in uncultured marine bacteria. Environmental Microbiology, 13 (2). pp. 427-438. ISSN 1462-2920

Tuck Haugaasen, Joanne M., Haugaasen, Torbjørn, Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765, Gribel, Rogerio and Wegge, Per (2011) Fruit Removal and Natural Seed Dispersal of the Brazil Nut Tree (Bertholletia excelsa) in Central Amazonia, Brazil. Biotropica, 44 (2). pp. 205-210. ISSN 1744-7429

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Urquiza-Haas, T., Peres, C. A. ORCID: https://orcid.org/0000-0002-1588-8765 and Dolman, P. M. ORCID: https://orcid.org/0000-0002-9340-2791 (2011) Large vertebrate responses to forest cover and hunting pressure in communal landholdings and protected areas of the Yucatan Peninsula, Mexico. Animal Conservation, 14 (3). pp. 271-282. ISSN 1469-1795

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Wilkie, David S., Bennett, Elizabeth L., Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 and Cunningham, Andrew A. (2011) The empty forest revisited. Annals of the New York Academy of Sciences, 1223 (1). pp. 120-128. ISSN 1749-6632

Wright, Hugh L., Lake, Iain R. ORCID: https://orcid.org/0000-0003-4407-5357 and Dolman, Paul M. ORCID: https://orcid.org/0000-0002-9340-2791 (2011) Agriculture-a key element for conservation in the developing world. Conservation Letters, 5 (1). pp. 11-19.

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Zech, Michael, Pedentchouk, Nikolai ORCID: https://orcid.org/0000-0002-2923-966X, Buggle, Björn, Leiber, Katharina, Kalbitz, Karsten, Marković, Slobodan B. and Glaser, Bruno (2011) Effect of leaf litter degradation and seasonality on D/H isotope ratios of n-alkane biomarkers. Geochimica et Cosmochimica Acta, 75 (17). pp. 4917-4928.

Zhang, Yuzhong, Deng, Shuxing, Liu, Yanan, Shen, Guofeng, Li, Xiqing, Cao, Jun, Wang, Xilong, Reid, Brian ORCID: https://orcid.org/0000-0002-9613-979X and Tao, Shu (2011) A passive air sampler for characterizing the vertical concentration profile of gaseous phase polycyclic aromatic hydrocarbons in near soil surface air. Environmental Pollution, 159 (3). pp. 694-699. ISSN 1873-6424