Items where Research Group is "Computational Biology

Article

Bauer, Alan, Bostrom, Aaron George, Ball, Joshua, Applegate, Christopher, Cheng, Tao, Laycock, Stephen, Rojas, Sergio Moreno, Kirwan, Jacob and Zhou, Ji (2019) Combining computer vision and deep learning to enable ultra-scale aerial phenotyping and precision agriculture: A case study of lettuce production. Horticulture Research, 2019 (6). pp. 1-12. ISSN 2052-7276

Bourdais, Gildas, McLachlan, Deirdre H., Rickett, Lydia M., Zhou, Ji, Siwoszek, Agnieszka, Häweker, Heidrun, Hartley, Matthew, Kuhn, Hannah, Morris, Richard J., MacLean, Dan ORCID: https://orcid.org/0000-0003-1032-0887 and Robatzek, Silke (2019) The use of quantitative imaging to investigate regulators of membrane trafficking in Arabidopsis stomatal closure. Traffic, 20 (2). pp. 168-180. ISSN 1398-9219

De la Concepcion, Juan Carlos, Franceschetti, Marina, MacLean, Dan ORCID: https://orcid.org/0000-0003-1032-0887, Terauchi, Ryohei, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Banfield, Mark J (2019) Protein engineering expands the effector recognition profile of a rice NLR immune receptor. eLife, 8. ISSN 2050-084X

Dorgham, Osama, Al-Mherat, Ibrahim, Al-Shaer, Jawdat, Bani-Ahmad, Sulieman and Laycock, Stephen (2019) Smart system for prediction of accurate surface electromyography signals using an artificial neural network. Future Internet, 11 (1). ISSN 1999-5903

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Kitao, Akio (2019) Multi-strand β-sheet of Alzheimer Aβ(1-40) folds to β-strip helix: Implication for protofilament formation. Journal of Biomolecular Structure and Dynamics, 37 (8). pp. 2143-2153. ISSN 1538-0254

Hellmuth, Marc, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) Reconciling event-labeled gene trees with MUL-trees and species networks. Journal of Mathematical Biology, 79 (5). pp. 1885-1925. ISSN 0303-6812

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Koolen, Jack H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) The polytopal structure of the tight-span of a totally split-decomposable metric. Discrete Mathematics, 342 (3). pp. 868-878. ISSN 0012-365X

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2019) Hierarchies from lowest stable ancestors in nonbinary phylogenetic networks. Journal of Classification, 36 (2). pp. 200-231. ISSN 0176-4268

Huber, Katharina T ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2019) Exploring and visualising spaces of tree reconciliations. Systematic Biology, 68 (4). pp. 607-618. ISSN 1063-5157

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume E. (2019) Three-way symbolic tree-maps and ultrametrics. Journal of Classification, 36 (3). pp. 513-540. ISSN 0176-4268

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2019) Phylogenetic flexibility via Hall-type inequalities and submodularity. Journal of Mathematical Biology, 81 (2). 598–617. ISSN 0303-6812

Janssen, Remie, Jones, Mark, Kelk, Steven, Stamoulis, Georgios and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2019) Treewidth of display graphs: bounds, brambles and applications. Journal of Graph Algorithms and Applications, 23 (4). pp. 715-743. ISSN 1526-1719

Lafond, Manuel, El-Mabrouk, Nadia, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) The complexity of comparing multiply-labelled trees by extending phylogenetic-tree metrics. Theoretical Computer Science, 760. pp. 15-34. ISSN 0304-3975

Matthews, Nick, Kitao, Akio, Laycock, Stephen and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2019) Haptic-assisted interactive molecular docking incorporating receptor flexibility. Journal of Chemical Information and Modeling, 59 (6). pp. 2900-2912. ISSN 1549-9596

Murakami, Yukihiro, van Iersel, Leo, Janssen, Remie, Jones, Mark and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2019) Reconstructing tree-child networks from reticulate-edge-deleted subnetworks. Bulletin of Mathematical Biology, 81 (10). 3823–3863. ISSN 0092-8240

Rallapalli, Ghanasyam, Corredor-Moreno, Pilar, Chalstrey, Edward, Page, Martin and Maclean, Daniel ORCID: https://orcid.org/0000-0003-1032-0887 (2019) Rapid fine mapping of causative mutations from sets of unordered, contig-sized fragments of genome sequence. BMC Bioinformatics, 20. ISSN 1471-2105

Roccatano, Danilo and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2019) Free energy profile of domain movement in ligand-free citrate synthase. Journal of Physical Chemistry B, 123 (9). 1998–2004. ISSN 1520-6106

Scholz, Guillaume E., Popescu, Andrei-Alin, Taylor, Martin I. ORCID: https://orcid.org/0000-0002-3858-0712, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2019) OSF-Builder: A new tool for constructing and representing evolutionary histories involving introgression. Systematic Biology, 68 (5). 717–729. ISSN 1063-5157

Tomlinson, Laurence, Yang, Ying, Emenecker, Ryan, Smoker, Matthew, Taylor, Jodie, Perkins, Sara, Smith, Justine, MacLean, Dan ORCID: https://orcid.org/0000-0003-1032-0887, Olszewski, Neil E. and Jones, Jonathan D. G. (2019) Using CRISPR/Cas9 genome editing in tomato to create a gibberellin-responsive dominant dwarf DELLA allele. Plant Biotechnology Journal, 17 (1). pp. 132-140. ISSN 1467-7644

Veevers, Ruth and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2019) Methodological improvements for the analysis of domain movements in large biomolecular complexes. Biophysics and Physicobiology, 16. pp. 328-336. ISSN 2189-4779

Book Section

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Gusfield, Dan (2019) 19th International Workshop on Algorithms in Bioinformatics (WABI 2019). In: 19th International Workshop on Algorithms in Bioinformatics. Schloss Dagstuhl – Leibniz-Zentrum für Informatik GmbH, Dagstuhl Publishing, Saarbrücken/Wadern, Germany., LIPICS. ISBN 978-3-95977-123-8

Conference or Workshop Item

Bird, Daniel and Laycock, Stephen (2019) GPGPU acceleration of environmental and movement datasets. In: ACM SIGGRAPH 2019 Posters - International Conference on Computer Graphics and Interactive Techniques, SIGGRAPH 2019, 2019-07-28.