Items where Research Group is "Computational Biology

Article

Bang, Sejeong, Dubickas, Arturas, Koolen, Jack and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2015) There are only finitely many distance-regular graphs of fixed valency greater than two. Advances in Mathematics, 269. pp. 1-55. ISSN 0001-8708

Bastkowski, Sarah, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, Andreas and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2015) Neighborhoods of trees in circular orderings. Bulletin of Mathematical Biology, 77 (1). pp. 46-70. ISSN 0092-8240

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Cowtan, Kevin, Way, Robert G., Jacobs, Peter and Jokimäki, Ari (2015) On a minimal model for estimating climate sensitivity. Ecological Modelling, 297. pp. 20-25. ISSN 0304-3800

Chedom, Donatien F., Murcia, Pablo R. and Greenman, Chris D. (2015) Inferring the clonal structure of viral populations from time series sequencing. PLoS Computational Biology, 11 (11). ISSN 1553-7358

Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042, Eeles, Rosalind A., Wedge, David C., Van Loo, Peter, Gundem, Gunes, Alexandrov, Ludmil B., Kreymer, Barbara, Butler, Adam, Lynch, Andrew, Edwards, Sandra E., Camacho, Niedzica, Massie, Charlie E., Kote-Jarai, Zsofia, Dennis, Nening, Merson, Sue, Leongamornlert, Daniel A., Zamora, Jorge, Kay, Jonathan, Luxton, Hayley J., Corbishley, Cathy, Thomas, Sarah, Nik-Zainal, Serena, Ramakrishna, Manasa, O'Meara, Sarah, Matthews, Lucy, Clark, Jeremy, Hurst, Rachel, Mithen, Richard, Bristow, Robert G., Boutros, Paul C., Fraser, Michael, Cooke, Susanna, Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Hinton, Jon, Teague, Jon, McLaren, Stuart, Mudie, Laura, Hardy, Claire, Anderson, Elizabeth, Joseph, Olivia, Goody, Victoria, Robinson, Ben, Maddison, Mark, Gamble, Stephen J., Greenman, Christopher, Berney, Dan, Hazell, Steven, Livni, Naomi, Fisher, Cyril, Ogden, Christopher, Kumar, Pardeep, Thompson, Alan, Woodhouse, Christopher J., Nicol, David, Mayer, Erik, Dudderidge, Tim, Shah, Nimish, Gnanapragasam, Vincent, Voet, Thierry, Campbell, Peter, Futreal, P. Andrew, Easton, Douglas F., Warren, Anne Y., Foster, Christopher S., Stratton, Michael R., Whitaker, Hayley C., McDermott, Ultan, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794 and Neal, David E. and the ICGC Prostate Group (2015) Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue. Nature Genetics, 47. 367–372. ISSN 1061-4036

Fotso-Chedom, Donatien, Murcia, Pablo R. and Greenman, Christopher (2015) Inferring the Clonal Structure of Viral Populations from Time Series Sequencing (Under Review: PLOS Comp Biol). (Unpublished)

Girdlestone, Christopher and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2015) The DynDom3D webserver for the analysis of domain movements in multimeric proteins. Journal of Computational Biology, 23 (1). pp. 21-26. ISSN 1557-8666

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Kitao, Akio (2015) Monte Carlo sampling with linear inverse kinematics for simulation of protein flexible regions. Journal of Chemical Theory and Computation, 11 (8). 3895–3905. ISSN 1549-9626

Herrmann, Sven, Koolen, Jack H., Lesser, Alice, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2015) Optimal realisations of two-dimensional, totally split-decomposable metrics. Discrete Mathematics, 338 (8). 1289–1299. ISSN 0012-365X

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Kettleborough, George (2015) Distinguished minimal topological lassos. SIAM Journal on Discrete Mathematics, 29 (2). 940–961. ISSN 0895-4801

Huber, Vincent T. ORCID: https://orcid.org/0000-0002-6368-7511, van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2015) How much information is needed to infer reticulate evolutionary histories? Systematic Biology, 64 (1). pp. 102-111. ISSN 1063-5157

Iakovou, Georgios, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen D. (2015) Adaptive GPU-accelerated force calculation for interactive rigid molecular docking using haptics. Journal of Molecular Graphics and Modelling, 61. pp. 1-12. ISSN 1093-3263

Kelly, Steven, Greenman, Christopher, Cook, Peter R. and Papantonis, Argyris (2015) Exon skipping is correlated with exon circularization. Journal of Molecular Biology, 427 (15). pp. 2414-2417. ISSN 0022-2836

Kettleborough, George, Dicks, Jo L., Roberts, Ian N. and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2015) Reconstructing (super)trees from data sets with missing distances: Not all is lost. Molecular Biology and Evolution, 32 (6). pp. 1628-1642. ISSN 0737-4038

Laycock, S. D., Bell, G. D., Corps, N., Mortimore, D. B., Cox, G., May, S. and Finkel, I. (2015) Using a combination of micro-computed tomography, CAD and 3D printing techniques to reconstruct incomplete 19th-century Cantonese chess pieces. Journal on Computing and Cultural Heritage, 7 (4). ISSN 1556-4673

Laycock, S. D., Hulse, M., Scrase, C. D., Tam, M. D., Isherwood, S., Mortimore, D. B., Emmens, D., Patman, J., Short, S. C. and Bell, G. D. (2015) Towards the production of radiotherapy treatment shells on 3D printers using data derived from DICOM CT and MRI: preclinical feasibility studies. Journal of Radiotherapy in Practice, 14 (01). pp. 92-98. ISSN 1460-3969

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2015) A parsimony-based metric for phylogenetic trees. Advances in Applied Mathematics, 66. 22–45. ISSN 0196-8858

Penso-Dolfin, L., Wu, T. ORCID: https://orcid.org/0000-0002-2663-2001 and Greenman, C. (2015) The combinatorics of tandem duplication. Discrete Applied Mathematics, 194. 1–22. ISSN 0166-218X

Popescu, Andrei-Alin and Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 (2015) PSIKO2: a fast and versatile tool to infer population stratification on various levels in GWAS. Bioinformatics, 31 (21). pp. 3552-3554. ISSN 1367-4803

Younsi, Reda and Maclean, Dan ORCID: https://orcid.org/0000-0003-1032-0887 (2015) Using 2k + 2 bubble searches to find single nucleotide polymorphisms in k-mer graphs. Bioinformatics, 31 (5). pp. 642-646. ISSN 1367-4803

Book Section

Guyon, Isabelle, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095, Bennett, Kristin, Jair Escalente, Hugo, Escalera, Sergio, Ho, Tin Kam, Macia, Nuria, Ray, Bisakha, Saeed, Mehreen, Statnikov, Alexander and Viegas, Evelyne (2015) Design of the 2015 ChaLearn AutoML challenge. In: Proceedings of International Joint Conference on Neural Networks (IJCNN). The Institute of Electrical and Electronics Engineers (IEEE).

Conference or Workshop Item

Saeed, Awat, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095 and Bagnall, Anthony (2015) Benchmarking the Semi-Supervised Naïve Bayes Classifier. In: 2015 International Joint Conference on Neural Networks, 2015-07-12 - 2015-07-17.