Items where Research Group is "Plant Sciences

Article

The Heliconius Genome Consortium (2012) Butterfly genome reveals promiscuous exchange of mimicry adaptations among species. Nature, 487 (7405). pp. 94-98. ISSN 0028-0836

The Tomato Genome Consortium (2012) The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 485 (7400). pp. 635-641. ISSN 0028-0836

Albrecht, Catherine, Boutrot, Freddy, Segonzac, Cécile, Schwessinger, Benjamin, Gimenez-Ibanez, Selena, Chinchilla, Delphine, Rathjen, John P, de Vries, Sacco C and Zipfel, Cyril (2012) Brassinosteroids inhibit pathogen-associated molecular pattern-triggered immune signaling independent of the receptor kinase BAK1. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 109 (1). pp. 303-308. ISSN 0027-8424

Azam, Sarwar, Thakur, Vivek, Ruperao, Pradeep, Shah, Trushar, Balaji, Jayashree, Amindala, BhanuPrakash, Farmer, Andrew D., Studholme, David J., May, Gregory D., Edwards, David, Jones, Jonathan D. G. and Varshney, Rajeev K. (2012) Coverage-based consensus calling (CbCC) of short sequence reads and comparison of CbCC results to identify SNPs in chickpea (Cicer arietinum; Fabaceae), a crop species without a reference genome. American Journal of Botany, 99 (2). pp. 186-192. ISSN 0002-9122

Banos-Sanz, J. I., Sanz-Aparicio, J., Brearley, C. A. ORCID: https://orcid.org/0000-0001-6179-9109 and Gonzalez, B. (2012) Expression, purification, crystallization and preliminary X-ray diffraction analysis of the apo form of Ins5 2-K from Arabidopsis thaliana. Acta Crystallographica Section F, 68. pp. 701-704.

Banoz-Sanz, José Ignacio, Sanz-Aparicio, Julia, Whitfield, Hayley, Hamilton, Christopher, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 and Gonzalez, Beatriz (2012) Conformational changes in inositol 1,3,4,5,6-pentakisphosphate 2-kinase upon substrate binding: Role of N-terminal lobe and enantiomeric substrate preference. The Journal of Biological Chemistry, 287 (35). pp. 29237-29249. ISSN 1083-351X

Beck, Martina, Zhou, Ji, Faulkner, Christine, MacLean, Daniel and Robatzek, Silke (2012) Spatio-temporal cellular dynamics of the Arabidopsis flagellin receptor reveal activation status-dependent endosomal sorting. The Plant Cell, 24 (10). pp. 4205-4219. ISSN 1040-4651

Birke, Hannah, Haas, Florian H., De Kok, Luit J., Balk, Janneke, Wirtz, Markus and Hell, Rüdiger (2012) Cysteine biosynthesis, in concert with a novel mechanism, contributes to sulfide detoxification in mitochondria of Arabidopsis thaliana. Biochemistry, 445 (2). pp. 275-283.

Bradley, Justin M., Marritt, Sophie J., Kihlken, Margaret A., Haynes, Kate, Hemmings, Andrew M. ORCID: https://orcid.org/0000-0003-3053-3134, Berks, Ben C., Cheesman, Myles R. and Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226 (2012) Redox and chemical activities of the hemes in the sulfur oxidation pathway enzyme SoxAX. Journal of Biological Chemistry, 287 (48). pp. 40350-40359. ISSN 0021-9258

Bãos-Sanz, Jose Ignacio, Sanz-Aparicio, Julia, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 and González, Beatriz (2012) Expression, purification, crystallization and preliminary X-ray diffraction analysis of the apo form of InsP 5 2-K from Arabidopsis thaliana. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 68 (6). pp. 701-704. ISSN 1744-3091

Caillaud, Marie-Cécile, Piquerez, Sophie J. M., Fabro, Georgina, Steinbrenner, Jens, Ishaque, Naveed, Beynon, Jim and Jones, Jonathan D. G. (2012) Subcellular localization of the Hpa RxLR effector repertoire identifies a tonoplast-associated protein HaRxL17 that confers enhanced plant susceptibility. The Plant Journal, 69 (2). pp. 252-265. ISSN 0960-7412

Caillaud, Marie-Cécile, Piquerez, Sophie J. M. and Jones, Jonathan D. G. (2012) Characterization of the membrane-associated HaRxL17 Hpa effector candidate. Plant Signaling & Behavior, 7 (1). pp. 145-149. ISSN 1559-2316

Folkes, Leighton, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Woolfenden, Hugh C., Stocks, Matthew B., Szittya, Gyorgy, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2012) PAREsnip: a tool for rapid genome-wide discovery of small RNA/target interactions evidenced through degradome sequencing. Nucleic Acids Research, 40 (13). ISSN 0305-1048

Gobbato, Enrico, Marsh, John F, Vernié, Tatiana, Wang, Ertao, Maillet, Fabienne, Kim, Jiyoung, Miller, J Benjamin ORCID: https://orcid.org/0000-0003-0882-033X, Sun, Jongho, Bano, S Asma, Ratet, Pascal, Mysore, Kirankumar S, Dénarié, Jean, Schultze, Michael and Oldroyd, Giles E D (2012) A GRAS-type transcription factor with a specific function in mycorrhizal signaling. Current Biology, 22 (23). pp. 2236-2241. ISSN 0960-9822

Goljanek-Whysall, Katarzyna, Pais, Helio, Rathjen, Tina, Sweetman, Dylan, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 (2012) Regulation of multiple target genes by miR-1 and miR-206 is pivotal for C2C12 myoblast differentiation. Journal of Cell Science, 125 (15). pp. 3590-3600. ISSN 0021-9533

Grimm, Dirk, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and van Rij, Ronald P. (2012) Everybody wins! Poland hosts thrilling competitions of viruses, RNAi and football teams. EMBO Reports, 13 (10). pp. 874-876. ISSN 1469-221X

Hanke, David E., Parmar, Paroo N., Caddick, Samuel E. K., Green, Porntip and Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 (2012) Synthesis of inositol phosphate ligands of plant hormone receptor complexes: pathways of inositol hexakisphosphate turnover. Biochemical Journal, 444 (3). pp. 601-609. ISSN 0264-6021

Jupe, Florian, Pritchard, Leighton, Etherington, Graham J., Mackenzie, Katrin, Cock, Peter J. A., Wright, Frank, Sharma, Sanjeev Kumar, Bolser, Dan, Bryan, Glenn J., Jones, Jonathan D. G. and Hein, Ingo (2012) Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics, 13. ISSN 1471-2164

Kemen, Eric and Jones, Jonathan D. G. (2012) Obligate biotroph parasitism: can we link genomes to lifestyles? Trends in Plant Science, 17 (8). pp. 448-457. ISSN 1360-1385

Kim, Jan, Camargo-Rodriguez, Anyela, Devoto, Alessandra, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Turner, John (2012) Computational modeling of the regulatory network organizing the wound response in Arabidopsis thaliana. Artificial Life, 18 (4). pp. 445-460. ISSN 1530-9185

Lee, Bok-Rye, Huseby, Stine, Koprivova, Anna, Chetelat, Aurore, Wirtz, Markus, Mugford, Sam T., Navid, Emily, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109, Saha, Shikha, Mithen, Richard, Hell, Rüdiger, Farmer, Edward E. and Kopriva, Stanislav (2012) Effects of fou8/fry1 mutation on sulfur metabolism: Is decreased internal sulfate the trigger of sulfate starvation response? PLoS One, 7 (6). ISSN 1932-6203

Lopez-Gomollon, Sara, Mohorianu, Irina, Szittya, Gyorgy, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2012) Diverse correlation patterns between microRNAs and their targets during tomato fruit development indicates different modes of microRNA actions. Planta, 236 (6). pp. 1875-1887. ISSN 0032-0935

Luo, Dexian, Bernard, Delphine G., Balk, Janneke, Hai, Huang and Cui, Xiaofeng (2012) The DUF59 family gene AE7 acts in the cytosolic iron-sulfur cluster assembly pathway to maintain nuclear genome integrity in Arabidopsis. The Plant Cell, 24. pp. 4135-4148. ISSN 1040-4651

Macho, Alberto P, Boutrot, Freddy, Rathjen, John P and Zipfel, Cyril (2012) Aspartate oxidase plays an important role in Arabidopsis stomatal immunity. Plant Physiology, 159 (4). pp. 1845-1856. ISSN 0032-0889

Marshall, Alex, Aalen, Reidunn B, Audenaert, Dominique, Beeckman, Tom, Broadley, Martin R, Butenko, Melinka A, Caño-Delgado, Ana I, de Vries, Sacco, Dresselhaus, Thomas, Felix, Georg, Graham, Neil S, Foulkes, John, Granier, Christine, Greb, Thomas, Grossniklaus, Ueli, Hammond, John P, Heidstra, Renze, Hodgman, Charlie, Hothorn, Michael, Inzé, Dirk, Ostergaard, Lars, Russinova, Eugenia, Simon, Rüdiger, Skirycz, Aleksandra, Stahl, Yvonne, Zipfel, Cyril and De Smet, Ive (2012) Tackling drought stress:receptor-like kinases present new approaches. The Plant Cell, 24 (6). pp. 2262-2278. ISSN 1040-4651

Matthewman, Colette A., Kawashima, Cintia G., Húska, Dalibor, Csorba, Tibor, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Kopriva, Stanislav (2012) miR395 is a general component of the sulfate assimilation regulatory network in Arabidopsis. FEBS Letters, 586 (19). pp. 3242-3248. ISSN 1873-3468

Mohorianu, Irina, Lopez-Gomollon, Sara, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2012) FiRePat-finding regulatory patterns between sRNAs and genes. Wiley Interdisciplinary Reviews: Data Mining and Knowledge Discovery, 2 (3). pp. 273-284.

Monaghan, Jacqueline and Zipfel, Cyril (2012) Plant pattern recognition receptor complexes at the plasma membrane. Current Opinion in Plant Biology, 15 (4). pp. 349-357. ISSN 1879-0356

Nicolas Molina, Francisco, Hall, Adam E., Csorba, Tibor, Turnbull, Carly and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2012) Biogenesis of Y RNA-derived small RNAs is independent of the microRNA pathway. FEBS Letters, 586 (8). pp. 1226-1230. ISSN 1873-3468

Segonzac, Cécile, Nimchuk, Zachary L, Beck, Martina, Tarr, Paul T, Robatzek, Silke, Meyerowitz, Elliot M and Zipfel, Cyril (2012) The shoot apical meristem regulatory peptide CLV3 does not activate innate immunity. The Plant Cell, 24 (8). pp. 3186-3192. ISSN 1040-4651

Sohn, K. H., Hughes, R. K., Piquerez, S. J., Jones, Jonathan and Banfield, M. J. (2012) Distinct regions of the Pseudomonas syringae coiled-coil effector AvrRps4 are required for activation of immunity. Proceedings of the National Academy of Sciences, 109 (40). pp. 16371-16376. ISSN 0027-8424

Sohn, Kee Hoon, Jones, Jonathan D. G. and Studholme, David J. (2012) Draft genome sequence of Pseudomonas syringae Pathovar Syringae Strain FF5, causal agent of stem tip dieback disease on ornamental pear. Journal of Bacteriology, 194 (14). pp. 3733-3734. ISSN 0021-9193

Solé, Montserrat, Popa, Crina, Mith, Oriane, Sohn, Kee Hoon, Jones, Jonathan D. G., Deslandes, Laurent and Valls, Marc (2012) The awr gene family encodes a novel class of Ralstonia solanacearum type III effectors displaying virulence and avirulence activities. Molecular Plant-Microbe Interactions, 25 (7). pp. 941-953. ISSN 0894-0282

Song, Jian Bo, Huang, Si Qi, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Yang, Zhi Min (2012) Regulation of leaf morphology by microRNA394 and its target LEAF CURLING RESPONSIVENESS. Plant and Cell Physiology, 53 (7). pp. 1283-1294. ISSN 0032-0781

Sorefan, Karim, Pais, Helio, Hall, Adam E, Kozomara, Ana, Griffiths-Jones, Sam, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2012) Reducing ligation bias of small RNAs in libraries for next generation sequencing. Silence, 3 (1).

Stocks, Matthew B., Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Mapleson, Daniel, Woolfenden, Hugh C., Mohorianu, Irina, Folkes, Leighton, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2012) The UEA sRNA workbench: a suite of tools for analysing and visualizing next generation sequencing microRNA and small RNA datasets. Bioinformatics, 28 (15). pp. 2059-2061. ISSN 1367-4803

Swingler, Tracey E., Wheeler, Guy, Carmont, Virginia, Elliott, Hannah R., Barter, Matthew J., Abu-Elmagd, Muhammad, Donell, Simon T., Boot-Handford, Raymond P., Hajihosseini, Mohammad K., Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Young, David A. and Clark, Ian M. (2012) The expression and function of microRNAs in chondrogenesis and osteoarthritis. Arthritis & Rheumatism, 64 (6). pp. 1909-1919. ISSN 1529-0131

Win, J, Chaparro-Garcia, A, Belhaj, K, Saunders, D G O, Yoshida, K, Dong, S, Schornack, S, Zipfel, C, Robatzek, S, Hogenhout, S A and Kamoun, S ORCID: https://orcid.org/0000-0002-0290-0315 (2012) Effector biology of plant-associated organisms:concepts and perspectives. Cold Spring Harbor Symposia on Quantitative Biology, 77. pp. 235-247. ISSN 1943-4456

Zhao, X., Elliston, A., Collins, S. R. A., Moates, G. K., Coleman, M. J. and Waldron, K. W. (2012) Enzymatic saccharification of duckweed (Lemna minor) biomass without thermophysical pretreatment. Biomass and Bioenergy, 47. pp. 354-361. ISSN 0961-9534

Zhou, Ji, Spallek, Thomas, Faulkner, Christine and Robatzek, Silke (2012) CalloseMeasurer: a novel software solution to measure callose deposition and recognise spreading callose patterns. Plant Methods, 8. ISSN 1746-4811