Items where Research Group is "Molecular Microbiology

A

Appia‑Ayme, Corinne, Hall, Andrea, Patrick, Elaine, Rajadurai, Shiny, Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914 and Rowley, Gary ORCID: https://orcid.org/0000-0002-5421-4333 (2012) ZraP is a periplasmic molecular chaperone and a repressor of the zinc-responsive two-component regulator ZraSR. Biochemical Journal, 442 (1). pp. 85-93. ISSN 0264-6021

B

Banos-Sanz, J. I., Sanz-Aparicio, J., Brearley, C. A. ORCID: https://orcid.org/0000-0001-6179-9109 and Gonzalez, B. (2012) Expression, purification, crystallization and preliminary X-ray diffraction analysis of the apo form of Ins5 2-K from Arabidopsis thaliana. Acta Crystallographica Section F, 68. pp. 701-704.

Banoz-Sanz, José Ignacio, Sanz-Aparicio, Julia, Whitfield, Hayley, Hamilton, Christopher, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 and Gonzalez, Beatriz (2012) Conformational changes in inositol 1,3,4,5,6-pentakisphosphate 2-kinase upon substrate binding: Role of N-terminal lobe and enantiomeric substrate preference. The Journal of Biological Chemistry, 287 (35). pp. 29237-29249. ISSN 1083-351X

Birke, Hannah, Haas, Florian H., De Kok, Luit J., Balk, Janneke, Wirtz, Markus and Hell, Rüdiger (2012) Cysteine biosynthesis, in concert with a novel mechanism, contributes to sulfide detoxification in mitochondria of Arabidopsis thaliana. Biochemistry, 445 (2). pp. 275-283.

Bowater, Laura, Cornea, Christine and Bowater, Richard P. ORCID: https://orcid.org/0000-0002-2745-7807 (2012) Visualizing Science Fiction and relating it to Science Fact. The Biochemist, 34 (6). pp. 4-8. ISSN 0954-982X

Bowater, Laura, Cornea, Christine, James, Helen and Bowater, Richard P. ORCID: https://orcid.org/0000-0002-2745-7807 (2012) Using science fiction to teach science facts. The Biochemist, 34 (6). pp. 15-20. ISSN 0954-982X

Bowater, Richard P. ORCID: https://orcid.org/0000-0002-2745-7807, Wood, Ian C. and Luisi, Ben F. (2012) From beads on a string to the pearls of regulation: The structure and dynamics of chromatin. Biochemical Society Transactions, 40 (2). pp. 331-334. ISSN 0300-5127

Bradley, Justin M., Marritt, Sophie J., Kihlken, Margaret A., Haynes, Kate, Hemmings, Andrew M. ORCID: https://orcid.org/0000-0003-3053-3134, Berks, Ben C., Cheesman, Myles R. and Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226 (2012) Redox and chemical activities of the hemes in the sulfur oxidation pathway enzyme SoxAX. Journal of Biological Chemistry, 287 (48). pp. 40350-40359. ISSN 0021-9258

Breuer, Marian, Zarzycki, Piotr, Shi, Liang, Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914, Edwards, Marcus J., Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Fredrickson, James K., Zachara, John M., Blumberger, Jochen and Rosso, Kevin M. (2012) Molecular structure and free energy landscape for electron transport in the decahaem cytochrome MtrF. Biochemical Society Transactions, 40 (6). pp. 1198-1203. ISSN 0300-5127

Bueno, Emilio, Mesa, Socorro, Bedmar, Eulogio J., Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 and Delgado, Maria J. (2012) Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions:Redox control. Antioxidants and Redox Signaling, 16 (8). pp. 819-852. ISSN 1523-0864

Bãos-Sanz, Jose Ignacio, Sanz-Aparicio, Julia, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 and González, Beatriz (2012) Expression, purification, crystallization and preliminary X-ray diffraction analysis of the apo form of InsP 5 2-K from Arabidopsis thaliana. Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 68 (6). pp. 701-704. ISSN 1744-3091

C

Caly, Delphine L., Coulthurst, Sarah J., Geoghegan, Joan A., Malone, Jacob G. ORCID: https://orcid.org/0000-0003-1959-6820 and Ryan, Robert P. (2012) Socializing, networking and development: a report from the second ‘Young Microbiologists Symposium on Microbe Signalling, Organization and Pathogenesis’. Molecular Microbiology, 86 (3). pp. 501-512. ISSN 1365-2958

Crack, Jason C., Green, Jeffrey, Hutchings, Matthew I., Thomson, Andrew J. and Le Brun, Nick E. ORCID: https://orcid.org/0000-0001-9780-4061 (2012) Bacterial iron-sulfur regulatory proteins as biological sensor-switches. Antioxidants & Redox Signaling, 17. pp. 1215-1231. ISSN 1523-0864

Curson, Andrew R. J., Fowler, Emily K., Dickens, Shilo, Johnston, Andrew W. B. and Todd, Jonathan D. (2012) Multiple DMSP lyases in the γ-proteobacterium Oceanimonas doudoroffii. Biogeochemistry, 110 (1-3). pp. 109-119. ISSN 0168-2563

E

Edwards, Marcus J., Fredrickson, James K., Zachara, John M., Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 and Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914 (2012) Analysis of structural MtrC models based on homology with crystal structure of MtrF. Biochemical Society Transactions, 40 (6). pp. 1181-1185. ISSN 0300-5127

Edwards, Marcus J., Hall, Andrea, Shi, Liang, Fredrickson, James K., Zachara, John M., Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 and Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914 (2012) The crystal structure of the extracellular 11-heme cytochrome UndA reveals a conserved 10-heme motif and defined binding site for soluble iron chelates. Structure, 20 (7). pp. 1275-1284. ISSN 1878-4186

F

Felgate, Heather, Giannopoulos, George, Sullivan, Matthew J. ORCID: https://orcid.org/0000-0003-2276-3132, Gates, Andrew J. ORCID: https://orcid.org/0000-0002-4594-5038, Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914, Baggs, Elizabeth, Rowley, Gary ORCID: https://orcid.org/0000-0002-5421-4333 and Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 (2012) The impact of copper, nitrate and carbon status on the emission of nitrous oxide by two species of bacteria with biochemically distinct denitrification pathways. Environmental Microbiology, 14 (7). pp. 1788-1800. ISSN 1462-2920

G

Gobbato, Enrico, Marsh, John F, Vernié, Tatiana, Wang, Ertao, Maillet, Fabienne, Kim, Jiyoung, Miller, J Benjamin ORCID: https://orcid.org/0000-0003-0882-033X, Sun, Jongho, Bano, S Asma, Ratet, Pascal, Mysore, Kirankumar S, Dénarié, Jean, Schultze, Michael and Oldroyd, Giles E D (2012) A GRAS-type transcription factor with a specific function in mycorrhizal signaling. Current Biology, 22 (23). pp. 2236-2241. ISSN 0960-9822

H

Hanke, David E., Parmar, Paroo N., Caddick, Samuel E. K., Green, Porntip and Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 (2012) Synthesis of inositol phosphate ligands of plant hormone receptor complexes: pathways of inositol hexakisphosphate turnover. Biochemical Journal, 444 (3). pp. 601-609. ISSN 0264-6021

Howell, Lesley A., Bowater, Richard A. ORCID: https://orcid.org/0000-0002-2745-7807, O'Connell, Maria A. ORCID: https://orcid.org/0000-0002-0267-0951, Reszka, Anthony P., Neidle, Stephen and Searcey, Mark ORCID: https://orcid.org/0000-0003-2273-8949 (2012) Synthesis of small molecules targeting multiple DNA structures using click chemistry. ChemMedChem, 7 (5). pp. 792-804. ISSN 1860-7179

L

Lee, Bok-Rye, Huseby, Stine, Koprivova, Anna, Chetelat, Aurore, Wirtz, Markus, Mugford, Sam T., Navid, Emily, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109, Saha, Shikha, Mithen, Richard, Hell, Rüdiger, Farmer, Edward E. and Kopriva, Stanislav (2012) Effects of fou8/fry1 mutation on sulfur metabolism: Is decreased internal sulfate the trigger of sulfate starvation response? PLoS One, 7 (6). ISSN 1932-6203

Liu, Juan, Wang, Zheming, Belchik, Sara M., Edwards, Marcus J., Liu, Chongxuan, Kennedy, David W., Merkley, Eric D., Lipton, Mary S., Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Zachara, John M., Fredrickson, James K., Rosso, Kevin M. and Shi, Liang (2012) Identification and characterization of MtoA: A decaheme c-type cytochrome of the neutrophilic Fe(II)-oxidizing bacterium Sideroxydans lithotrophicus ES-1. Frontiers in Microbiology, 3. ISSN 1664-302X

Lucas-Elío, Patricia, Goodwin, Lynne, Woyke, Tanja, Pitluck, Sam, Nolan, Matt, Kyrpides, Nikos C., Detter, Janine C., Copeland, Alex, Lu, Megan, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Shunsheng, Land, Miriam L., Ivanova, Natalia, Mikhailova, Natalia, Johnston, Andrew W. B. and Sanchez-Amat, Antonio (2012) Complete genome sequence of Marinomonas posidonica type strain (IVIA-Po-181T). Standards in Genomic Sciences, 7 (1). pp. 31-43. ISSN 1944-3277

Lucas-Elío, Patricia, Goodwin, Lynne, Woyke, Tanja, Pitluck, Sam, Nolan, Matt, Kyrpides, Nikos C., Detter, Janine C., Copeland, Alex, Teshima, Hazuki, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Shunsheng, Land, Miriam L., Ivanova, Natalia, Mikhailova, Natalia, Johnston, Andrew W. B. and Sanchez-Amat, Antonio (2012) Complete genome sequence of the melanogenic marine bacterium Marinomonas mediterranea type strain (MMB-1T). Standards in Genomic Sciences, 6.

Luo, Dexian, Bernard, Delphine G., Balk, Janneke, Hai, Huang and Cui, Xiaofeng (2012) The DUF59 family gene AE7 acts in the cytosolic iron-sulfur cluster assembly pathway to maintain nuclear genome integrity in Arabidopsis. The Plant Cell, 24. pp. 4135-4148. ISSN 1040-4651

M

Malone, Jacob G. ORCID: https://orcid.org/0000-0003-1959-6820, Jaeger, Tina, Manfredi, Pablo, Dötsch, Andreas, Blanka, Andrea, Bos, Raphael, Cornelis, Guy R., Häussler, Susanne and Jenal, Urs (2012) The YfiBNR signal transduction mechanism reveals novel targets for the evolution of persistent Pseudomonas aeruginosa in cystic fibrosis airways. PLoS Pathogens, 8 (6). ISSN 1553-7374

Marritt, Sophie J., Lowe, Thomas G., Bye, Jordan, McMillan, Duncan G. G., Shi, Liang, Fredrickson, Jim, Zachara, John, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Cheesman, Myles R., Jeuken, Lars J. C. and Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226 (2012) A functional description of CymA, an electron-transfer hub supporting anaerobic respiratory flexibility in Shewanella. Biochemical Journal, 444 (3). pp. 465-474. ISSN 0264-6021

Marritt, Sophie J., McMillan, Duncan G.G., Shi, Liang, Fredrickson, James K., Zachara, John M., Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Jeuken, LJC and Butt, JN ORCID: https://orcid.org/0000-0002-9624-5226 (2012) The roles of CymA in support of the respiratory flexibility of Shewanella oneidensis MR-1. Biochemical Society Transactions, 40 (6). pp. 1217-1221. ISSN 0300-5127

Moore, Jane M., Bradshaw, Elizabeth, Seipke, Ryan F., Hutchings, Matthew I. and McArthur, Michael (2012) Use and discovery of chemical elicitors that stimulate biosynthetic gene clusters in Streptomyces bacteria. Methods in Enzymology, 517. pp. 367-385. ISSN 1557-7988

P

Perkins, Timothy T., Davies, Mark R., Klemm, Elizabeth J., Rowley, Gary ORCID: https://orcid.org/0000-0002-5421-4333, Wileman, Tom, James, Keith, Keane, Thomas, Maskell, Duncan, Hinton, Jay, Dougan, Gordon and Kingsley, Robert A. (2012) Chip-seq and transcriptome analysis of the OmpR regulon of Salmonella enterica serovas Typhi and Typhimurium reveals accessory genes implicated in host colonization. Molecular Microbiology, 87 (3). pp. 526-538. ISSN 0950-382X

R

Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226, Fredrickson, Jim K., Zachara, John M., Shi, Liang, Edwards, Marcus J., White, Gaye, Baiden, Nanakow, Gates, Andrew J. ORCID: https://orcid.org/0000-0002-4594-5038, Marritt, Sophie J. and Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914 (2012) The ‘porin-cytochrome’ model for microbe-to-mineral electron transfer. Molecular Microbiology, 85 (2). pp. 201-212. ISSN 1365-2958

Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Edwards, Marcus J., White, Gaye F., Baiden, Nanakow, Hartshorne, Robert S., Fredrickson, Jim, Shi, Liang, Zachara, John, Gates, Andrew J. ORCID: https://orcid.org/0000-0002-4594-5038, Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226 and Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914 (2012) Exploring the biochemistry at the extracellular redox frontier of bacterial mineral Fe(III) respiration. Biochemical Society Transactions, 40 (3). pp. 493-500. ISSN 0300-5127

Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Fredrickson, James K. and Zachara, John M. (2012) Electron transport at the microbe-mineral interface: A synthesis of current research challenges. Biochemical Society Transactions, 40 (6). pp. 1163-1166. ISSN 0300-5127

Rowley, Gary ORCID: https://orcid.org/0000-0002-5421-4333, Hensen, Daniela, Felgate, Heather, Arkenberg, Anke, Appia‑Ayme, Corinne, Prior, Karen, Harrington, Carl, Field, Sarah J., Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226, Baggs, Elizabeth and Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 (2012) Resolving the contributions of the membrane-bound and periplasmic nitrate reductase systems to nitric oxide and nitrous oxide production in Salmonella enterica serovar Typhimurium. Biochemical Journal, 441 (2). pp. 755-762. ISSN 0264-6021

S

Seipke, Ryan, Gruschow, Sabine, Goss, Rebecca and Hutchings, Matthew (2012) Isolating antifungals from fungus-growing ant symbionts using a genome-guided chemistry approach. Methods in Enzymology, 517. pp. 47-70. ISSN 1557-7988

Seipke, Ryan F., Barke, Jörg, Ruiz-Gonzalez, Mario X., Orivel, Jérôme, Yu, Douglas W. and Hutchings, Matthew I. (2012) Fungus-growing Allomerus ants are associated with antibiotic-producing Actinobacteria. Antonie van Leeuwenhoek, 101. pp. 443-447. ISSN 1572-9699

Shi, Liang, Rosso, Kevin M., Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832, Zachara, John M. and Fredrickson, James K. (2012) Molecular underpinnings of Fe(III) oxide reduction by Shewanella Oneidensis MR-1. Frontiers in Microbiology, 3. ISSN 1664-302X

Stremińska, Marta A., Felgate, Heather, Rowley, Gary ORCID: https://orcid.org/0000-0002-5421-4333, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 and Baggs, Elizabeth M. (2012) Nitrous oxide production in soil isolates of nitrate-ammonifying bacteria. Environmental Microbiology Reports, 4 (1). pp. 66-71. ISSN 1758-2229

Sun, Lei, Curson, Andrew R. J., Todd, Jonathan D. and Johnston, Andrew W. B. (2012) Diversity of DMSP transport in marine bacteria, revealed by genetic analyses. Biogeochemistry, 110 (1-3). pp. 121-130. ISSN 0168-2563

Sutcliffe, Iain C., Harrington, Dean J. and Hutchings, Matthew I. (2012) A phylum level analysis reveals lipoprotein biosynthesis to be a fundamental property of bacteria. Protein & Cell, 3 (3). pp. 163-170. ISSN 1674-800X

Swainsbury, David J.K., Zhou, Liang, Oldroyd, Giles E.D. and Bornemann, Stephen (2012) Calcium ion binding properties of medicago truncatula calcium/calmodulin- dependent protein kinase. Biochemistry, 51 (35). pp. 6897-6907. ISSN 0006-2960

T

Todd, Jonathan D., Curson, Andrew R. J., Sullivan, Matthew J. ORCID: https://orcid.org/0000-0003-2276-3132, Kirkwood, Mark and Johnston, Andrew W. B. (2012) The Ruegeria pomeroyi acuI gene has a tole in DMSP catabolism and resembles yhdH of E. coli and other bacteria in conferring resistance to acrylate. PLoS One, 7 (4). ISSN 1932-6203

Todd, Jonathan D., Kirkwood, Mark, Newton-Payne, Simone and Johnston, Andrew W. B. (2012) DddW, a third DMSP lyase in a model Roseobacter marine bacterium, Ruegeria pomeroyi DSS-3. The ISME Journal, 6 (1). pp. 223-226. ISSN 1751-7362

W

Wang, Lixin, Eldred, Julie A, Sidaway, Peter, Sanderson, Julie, Smith, Andrew J. O., Bowater, Richard P ORCID: https://orcid.org/0000-0002-2745-7807, Reddan, John R and Wormstone, I Michael ORCID: https://orcid.org/0000-0002-6423-7766 (2012) Sigma 1 receptor stimulation protects against oxidative damage through suppression of the ER stress responses in the human lens. Mechanisms of Ageing and Development, 133 (11-12). pp. 665-674. ISSN 0047-6374

White, Gaye F., Shi, Zhi, Shi, Liang, Dohnalkova, Alice C., Fredrickson, James K., Zachara, John M., Butt, Julea N. ORCID: https://orcid.org/0000-0002-9624-5226, Richardson, David J. ORCID: https://orcid.org/0000-0002-6847-1832 and Clarke, Thomas A. ORCID: https://orcid.org/0000-0002-6234-1914 (2012) Development of a proteoliposome model to probe transmembrane electron-transfer reactions. Biochemical Society Transactions, 40 (6). pp. 1257-1260. ISSN 0300-5127

Willemse, Joost, Ruban-Osmialowska, Beata, Widdick, David, Celler, Katherine, Hutchings, Matthew I., van Wezel, Gilles P. and Palmer, Tracy (2012) Dynamic localization of Tat protein transport machinery components in Streptomyces coelicolor. Journal of Bacteriology, 194 (22). pp. 6272-6281. ISSN 0021-9193