Items where Research Group is "Environmental Biology

Article

Barlow, Jos, Araujo, Ivanei S., Overal, William L., Gardner, Toby A., Silva Mendes, Fernanda, Lake, Iain R. ORCID: https://orcid.org/0000-0003-4407-5357 and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Diversity and composition of fruit-feeding butterflies in tropical Eucalyptus plantations. Biodiversity and Conservation, 17 (5). pp. 1089-1104. ISSN 0960-3115

Barlow, Jos and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Fire-mediated dieback and compositional cascade in an Amazonian forest. Philosophical Transactions of the Royal Society B: Biological Sciences, 363 (1498). pp. 1787-1794. ISSN 1471-2970

Bowler, Chris, Allen, Andrew E., Badger, Jonathan H., Grimwood, Jane, Jabbari, Kamel, Kuo, Alan, Maheswari, Uma, Martens, Cindy, Maumus, Florian, Otillar, Robert P., Rayko, Edda, Salamov, Asaf, Vandepoele, Klaas, Beszteri, Bank, Gruber, Ansgar, Heijde, Marc, Katinka, Michael, Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Valentin, Klaus, Verret, Fréderic, Berges, John A., Brownlee, Colin, Cadoret, Jean-Paul, Chiovitti, Anthony, Choi, Chang Jae, Coesel, Sacha, De Martino, Alessandra, Detter, J. Chris, Durkin, Colleen, Falciatore, Angela, Fournet, Jérome, Haruta, Miyoshi, Huysman, Marie J. J., Jenkins, Bethany D., Jiroutova, Katerina, Jorgensen, Richard E., Joubert, Yolaine, Kaplan, Aaron, Kroger, Nils, Kroth, Peter G., La Roche, Julie, Lindquist, Erica, Lommer, Markus, Martin-Jezequel, Véronique, Lopez, Pascal J., Lucas, Susan, Mangogna, Manuela, McGinnis, Karen, Medlin, Linda K., Montsant, Anton, Secq, Marie-Pierre Oudot–Le, Napoli, Carolyn, Obornik, Miroslav, Parker, Micaela Schnitzler, Petit, Jean-Louis, Porcel, Betina M., Poulsen, Nicole, Robison, Matthew, Rychlewski, Leszek, Rynearson, Tatiana A., Schmutz, Jeremy, Shapiro, Harris, Siaut, Magali, Stanley, Michele, Sussman, Michael R., Taylor, Alison R., Vardi, Assaf, von Dassow, Peter, Vyverman, Wim, Willis, Anusuya, Wyrwicz, Lucyan S., Rokhsar, Daniel S., Weissenbach, Jean, Armbrust, E. Virginia, Green, Beverley R., Van De Peer, Yves and Grigoriev, Igor V. (2008) The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature, 456 (7219). pp. 239-244.

Buitenhuis, Erik T. ORCID: https://orcid.org/0000-0001-6274-5583, Pangerc, Tanja, Franklin, Daniel J., Le Quéré, Corinne ORCID: https://orcid.org/0000-0003-2319-0452 and Malin, Gill ORCID: https://orcid.org/0000-0002-3639-9215 (2008) Growth rates of six coccolithophorid strains as a function of temperature. Limnology and Oceanography, 53 (3). pp. 1181-1185. ISSN 1939-5590

Chen, Yin, Dumont, Marc G., McNamara, Niall P., Chamberlain, Paul M., Bodrossy, Levente, Stralis-Pavese, Nancy and Murrell, J. Colin (2008) Diversity of the active methanotrophic community in acidic peatlands as assessed by mRNA and SIP-PLFA analyses. Environmental Microbiology, 10 (2). pp. 446-459. ISSN 1462-2912

Chen, Yin, Dumont, Marc G., Neufeld, Josh D., Bodrossy, Levante, Stralis-Pavese, Nancy, McNamara, Niall P., Ostle, Nick, Briones, Maria J. I. and Murrell, J. Colin (2008) Revealing the uncultivated majority: combining DNA stable-isotope probing, multiple displacement amplification and metagenomic analyses of uncultivated Methylocystis in acidic peatlands. Environmental Microbiology, 10 (10). pp. 2609-2622. ISSN 1462-2920

Chen, Yin, McNamara, Niall P., Dumont, Marc G., Bodrossy, Levente, Stralis-Pavese, Nancy and Murrell, J. Colin (2008) The impact of burning and Calluna removal on below-ground methanotroph diversity and activity in a peatland soil. Applied Soil Ecology, 40 (2). pp. 291-298.

Cunliffe, Michael, Schäfer, Hendrik, Harrison, Emma, Cleave, Simon, Upstill-Goddard, Robert and Murrell, J. Colin (2008) Phylogenetic and functional gene analysis of the bacterial and archaeal communities associated with the surface microlayer of an estuary. The ISME Journal, 2 (7). pp. 776-789. ISSN 1751-7362

Curson, A. R. J., Rogers, R., Todd, J. D., Brearley, C. A. ORCID: https://orcid.org/0000-0001-6179-9109 and Johnston, A. W. B. (2008) Molecular genetic analysis of a dimethylsulfoniopropionate lyase that liberates the climate-changing gas dimethylsulfide in several marine a-proteobacteria and Rhodobacter sphaeroides. Environmental Microbiology, 10 (3). pp. 757-767. ISSN 1462-2920

Dolman, Paul M. ORCID: https://orcid.org/0000-0002-9340-2791 and Waeber, Kristin (2008) Ecosystem and competition impacts of introduced deer. Wildlife Research, 35 (3). pp. 202-214. ISSN 1448-5494

Enders, Sara K., Pagani, Mark, Pantoja, Silvio, Baron, Jill S., Wolfe, Alexander P., Pedentchouk, Nikolai ORCID: https://orcid.org/0000-0002-2923-966X and Nunez, Lilian (2008) Compound-specific stable isotopes of organic compounds from lake sediments track recent environmental changes in an alpine ecosystem, Rocky Mountain National Park, Colorado. Limnology and Oceanography, 53 (4). pp. 1468-1478. ISSN 1939-5590

Gardner, Toby A., Barlow, Jos, Araujo, Ivanei S., Avila-Pires, Teresa Cristina, Bonaldo, Alexandre B., Costa, Joana E., Esposito, Maria Cristina, Ferreira, Leandro V., Hawes, Joseph, Hernandez, Malva I. M., Hoogmoed, Marina S., Leite, Rafael N., Lo-Man-Hung, Nancy F., Malcolm, Jay R., Martins, Marlucia B., Mestre, Luiz A. M., Miranda-Santos, Ronildon, Overal, William L., Parry, Luke, Peters, Sandra L., Ribeiro Jr., Marco Antônio, Da Silva, Maria N. F., Da Silva Motta, Catarina and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) The cost-effectiveness of biodiversity surveys in tropical forests. Ecology Letters, 11 (2). pp. 139-150. ISSN 1461-0248

Gardner, Toby A., Hernandez, Malva I. M., Barlow, Jos and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Understanding the biodiversity consequences of habitat change: The value of secondary and plantation forests for neotropical dung beetles. Journal of Applied Ecology, 45 (3). pp. 883-893. ISSN 1365-2664

Gilroy, James C. ORCID: https://orcid.org/0000-0002-7597-5780, Anderson, Guy Q.A., Grice, Philip V, Vickery, Juliet A., Bray, Iain, Watts, P. Nicholas and Sutherland, William J. (2008) Could soil degradation contribute to farmland bird declines? Links between soil penetrability and the abundance of yellow wagtails Motacilla flava in arable fields. Biological Conservation, 141 (12). 3116–3126. ISSN 0006-3207

Girling, R. D. and Hassall, M. (2008) Behavioural responses of the seven-spot ladybird Coccinella septempunctata to plant headspace chemicals collected from four crop Brassicas and Arabidopsis thaliana, infested with Myzus persicae. Agricultural and Forest Entomology, 10 (4). pp. 297-306. ISSN 1461-9563

Girling, Robbie D., Madison, Rachael, Hassall, Mark, Poppy, Guy M. and Turner, John G. (2008) Investigations into plant biochemical wound-response pathways involved in the production of aphid-induced plant volatiles. Journal of Experimental Botany, 59 (11). pp. 3077-3085. ISSN 1460-2431

Gui, Yue and Grant, Alastair ORCID: https://orcid.org/0000-0002-1147-2375 (2008) Joint effects of density dependence and toxicant exposure on Drosophila melanogaster populations. Ecotoxicology and Environmental Safety, 70 (2). pp. 236-243. ISSN 1090-2414

Hamberger, Alexandra, Horn, Marcus A., Dumont, Marc G., Murrell, J. Colin and Drake, Harold L. (2008) Anaerobic consumers of monosaccharides in a moderately acidic fen. Applied and Environmental Microbiology, 74 (10). pp. 3112-3120. ISSN 0099-2240

Haugaasen, Torbjørn and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Associations between primates and other mammals in a central Amazonian forest landscape. Primates, 49 (3). pp. 219-222.

Haugaasen, Torbjørn and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Population abundance and biomass of large-bodied birds in Amazonian flooded and unflooded forests. Bird Conservation International, 18 (2). pp. 87-101. ISSN 1474-0001

Hawes, Joseph, Barlow, Jos, Gardner, Toby A. and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) The value of forest strips for understorey birds in an Amazonian plantation landscape. Biological Conservation, 141 (9). pp. 2262-2278.

Hickley, Phil, Muchiri, Mucai, Britton, Robert and Boar, Rosalind (2008) Economic gain versus ecological damage from the introduction of the non-native freshwater fish: Case studies from Kenya. The Open Fish Science Journal, 1 (1). pp. 36-46. ISSN 1874-401X

Hickman, Zachary A. and Reid, Brian J. ORCID: https://orcid.org/0000-0002-9613-979X (2008) Earthworm assisted bioremediation of organic contaminants. Environment International, 34 (7). pp. 1072-1081. ISSN 1873-6750

Hickman, Zachary A. and Reid, Brian J. ORCID: https://orcid.org/0000-0002-9613-979X (2008) Increased microbial catabolic activity in diesel contaminated soil following addition of earthworms (Dendrobaena veneta) and compost. Soil Biology and Biochemistry, 40 (12). pp. 2970-2976.

Hickman, Zachary A. and Reid, Brian J. ORCID: https://orcid.org/0000-0002-9613-979X (2008) The co-application of earthworms (Dendrobaena veneta) and compost to increase hydrocarbon losses from diesel contaminated soils. Environment International, 34 (7). pp. 1016-1022. ISSN 1873-6750

Hickman, Zachary A., Swindell, Annika L., Allan, Ian J., Rhodes, Angela H., Hare, Rina, Semple, Kirk T. and Reid, Brian J. ORCID: https://orcid.org/0000-0002-9613-979X (2008) Assessing biodegraation potential of PAHs in complex multi-contaminant matrices. Environmental Pollution, 156 (3). pp. 1041-1045. ISSN 1873-6424

Hughes, C., Malin, G. ORCID: https://orcid.org/0000-0002-3639-9215, Turley, C. M., Keely, B. J., Nightingale, P. D. and Liss, P. S. (2008) The production of volatile iodocarbons by biogenic marine aggregates. Limnology and Oceanography, 53 (2). pp. 867-872. ISSN 1939-5590

Héry, Marina, Singer, Andrew C., Kumaresan, Deepak, Bodrossy, Levente, Stralis-Pavese, Nancy, Prosser, Jim I., Thompson, Ian P. and Murrell, J. Colin (2008) Effect of earthworms on the community structure of active methanotrophic bacteria in a landfill cover soil. The ISME Journal, 2 (1). pp. 92-104. ISSN 1751-7362

Jensen, Sigmund, Neufeld, Josh D., Birkeland, Nils-Kåre, Hovland, Martin and Murrell, J. Colin (2008) Insight into the microbial community structure of a Norwegian deep-water coral reef environment. Deep-Sea Research Part I-Oceanographic Research Papers, 55 (11). pp. 1554-1563. ISSN 1879-0119

Jensen, Sigmund, Neufeld, Josh D., Birkeland, Nils-Kåre, Hovland, Martin and Murrell, John Colin (2008) Methane assimilation and trophic interactions with marine Methylomicrobium in deep-water coral reef sediment off the coast of Norway. FEMS Microbiology Ecology, 66 (2). pp. 320-330. ISSN 1574-6941

Krell, Andreas, Beszteri, Bánk, Dieckmann, Gerhard, Glockner, Gernot, Valentin, Klaus and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2008) A new class of ice-binding proteins discovered in a salt-stress-induced cDNA library of the psychrophilic diatom Fragilariopsis cylindrus (Bacillariophyceae). European Journal of Phycology, 43 (4). pp. 423-433. ISSN 1469-4433

Kroth, Peter G., Chiovitti, Anthony, Gruber, Ansgar, Martin-Jezequel, Veronique, Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Parker, Micaela Schnitzler, Stanley, Michele S., Kaplan, Aaron, Caron, Lise, Weber, Till, Maheswari, Uma, Armbrust, E. Virginia and Bowler, Chris (2008) A model for carbohydrate metabolism in the diatom Phaeodactylum tricornutum deduced from comparative whole genome analysis. PLoS One, 3 (1). ISSN 1932-6203

Latawiec, Agnieszka E., Swindell, Annika L. and Reid, Brian J. ORCID: https://orcid.org/0000-0002-9613-979X (2008) Environmentally friendly assessment of organic compound bioaccessibility using sub-critical water. Environmental Pollution, 156 (2). pp. 467-473. ISSN 1873-6424

Lees, A. C. and Peres, C. A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Avian life-history determinants of local extinction risk in a hyper-fragmented neotropical forest landscape. Animal Conservation, 11 (2). pp. 128-137. ISSN 1469-1795

Lees, Alexander C., Davis, Bradley J. W., de Oliveira, Ayslaner V. G. and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Avifauna of a structurally heterogenous forest landscape in the Serra dos Caiabis, Mato Grosso, Brazil: A preliminary assessment. Cotinga, 29. pp. 149-159.

Lees, Alexander C. and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Conservation value of remnant riparian forest corridors of varying quality for Amazonian birds and mammals. Conservation Biology, 22 (2). pp. 439-449. ISSN 1523-1739

Mallord, John W., Dolman, Paul W. ORCID: https://orcid.org/0000-0002-9340-2791, Brown, Andy and Sutherland, William J. (2008) Early nesting does not result in greater productivity in the multi-brooded Woodlark Lullula arborea. Bird Study, 55 (2). pp. 145-151. ISSN 1944-6705

McDonald, Ian R., Bodrossy, Levente, Chen, Yin and Murrell, J. Colin (2008) Molecular ecology techniques for the study of aerobic methanotrophs. Applied and Environmental Microbiology, 74 (5). pp. 1305-1315. ISSN 0099-2240

Michalski, Fernanda, Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 and Lake, Iain R. ORCID: https://orcid.org/0000-0003-4407-5357 (2008) Deforestation dynamics in a fragmented region of southern Amazonia: Evaluation and future scenarios. Environmental Conservation, 35 (2). pp. 93-103. ISSN 1469-4387

Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Samanta, Manoj Pratim, Iverson, Vaughn, Berthiaume, Chris, Robison, Matthew, Holtermann, Karie, Durkin, Colleen, BonDurant, Sandra Splinter, Richmond, Kathryn, Rodesch, Matthew, Kallas, Toivo, Huttlin, Edward L., Cerrina, Francesco, Sussman, Michael R. and Armbrust, E. Virginia (2008) From the Cover: Whole-genome expression profiling of the marine diatom Thalassiosira pseudonana identifies genes involved in silicon bioprocesses. Proceedings of the National Academy of Sciences, 105 (5). pp. 1579-1584. ISSN 0027-8424

Morris, A.J. and Gilroy, J.J. ORCID: https://orcid.org/0000-0002-7597-5780 (2008) Close to the edge:Predation risks for two declining farmland passerines. Ibis, 150 (SUPPL.1). pp. 168-177. ISSN 0019-1019

Murrell, JC, Semrau, JD and DiSpirito, AA (2008) In Memoriam: Professor Sir Howard Dalton, FRS (1944 – 2008). Trends in Microbiology, 16 (5). p. 189. ISSN 1878-4380

Mustakhimov, Ildar I., Rozova, Olga N., Reshetnikov, Alexander S., Khmelenina, Valentina N., Murrell, J. Colin and Trotsenko, Yuri A. (2008) Characterization of the recombinant diaminobutyric acid acetyltransferase from Methylophaga thalassica and Methylophaga alcalica. FEMS Microbiology Letters, 283 (1). pp. 91-96. ISSN 1574-6968

Mühling, Martin, Woolven-Allen, John, Murrell, J. Colin and Joint, Ian (2008) Improved group-specific PCR primers for denaturing gradient gel electrophoresis analysis of the genetic diversity of complex microbial communities. The ISME Journal, 2 (4). pp. 379-392. ISSN 1751-7362

Neufeld, Josh D., Boden, Rich, Moussard, Hélène, Schafer, Hendrik and Murrell, J. Colin (2008) Substrate-specific clades of active marine methylotrophs associated with a phytoplankton bloom in a temperate coastal environment. Applied and Environmental Microbiology, 74 (23). pp. 7321-7328. ISSN 0099-2240

Neufeld, Josh D., Chen, Yin, Dumont, Marc G. and Murrell, J. Colin (2008) Marine methylotrophs revealed by stable-isotope probing, multiple displacement amplification and metagenomics. Environmental Microbiology, 10 (6). pp. 1526-1535. ISSN 1462-2920

Norris, Darren, Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765, Michalski, Fernanda and Hinchsliffe, Kay (2008) Terrestrial mammal responses to edges in Amazonian forest patches: A study based on track stations. Mammalia, 72 (1). pp. 15-23. ISSN 1864-1547

Ogilvie, Lesley A. and Grant, Alastair ORCID: https://orcid.org/0000-0002-1147-2375 (2008) Linking pollution induced community tolerance (PICT) and microbial community structure in chronically metal polluted estuarine sediments. Marine Environmental Research, 65 (2). pp. 187-198.

Parker, Micaela S., Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 and Armbrust, E. Virginia (2008) Genomic insights into marine microalgae. Annual Review of Genetics, 42. pp. 619-645.

Pedentchouk, Nikolai ORCID: https://orcid.org/0000-0002-2923-966X, Sumner, William, Tipple, Brett and Pagani, Mark (2008) Delta 13C and delat 8D compositions of n-alkanes from modern angiosperms and conifers: An experimental set up in central Washington State, USA. Organic Geochemistry, 39 (8). pp. 1066-1071.

Reshetnikov, Alexander S., Rozova, Olga N., Khmelenina, Valentina N., Mustakhimov, Ildar I., Beschastny, Alexander P., Murrell, J. Colin and Trotsenko, Yuri A. (2008) Characterization of the pyrophosphate-dependent 6-phosphofructokinase from Methylococcus capsulatus Bath. FEMS Microbiology Letters, 288 (2). pp. 202-210. ISSN 1574-6968

Robinson, Carol ORCID: https://orcid.org/0000-0003-3033-4565 and Owens, Nicholas J. P. (2008) Patrick Michael Holligan, a short biography. Journal of Plankton Research, 30 (2). pp. 95-106. ISSN 1464-3774

Santos, Bráulio A., Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765, Oliveira, Marcondes A., Grillo, Alexandre, Alves-Costa, Cecília P. and Tabarelli, Marcelo (2008) Drastic erosion in functional attributes of tree assemblages in Atlantic forest fragments of northeastern Brazil. Biological Conservation, 141 (1). pp. 249-260.

Semrau, Jeremy D., DiSpirito, Alan A. and Murrell, J. Colin (2008) Life in the extreme: thermoacidophilic methanotrophy. Trends in Microbiology, 16 (5). pp. 190-193. ISSN 1878-4380

Tabarelli, Marcelo, Lopes, Ariadna V. and Peres, Carlos A. ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Edge-effects drive tropical forest fragments towards an early-successional system. Biotropica, 40 (6). pp. 657-661. ISSN 1744-7429

Trotsenko, Yuri A. and Murrell, John Colin (2008) Metabolic aspects of aerobic obligate methanotrophy. Advances in Applied Microbiology, 63. pp. 183-229.

Book Section

Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 and Thomas, David N. (2008) Microalgae in polar regions:Linking functional genomics and physiology with environmental conditions. In: Psychrophiles. Springer Berlin / Heidelberg, pp. 285-312. ISBN 9783540743347

Peres, CA ORCID: https://orcid.org/0000-0002-1588-8765 (2008) Soil fertility and arboreal mammal biomass in tropical forests. In: Tropical Forest Community Ecology. Blackwell Scientific, Oxford.

Posen, PE, Lovett, AA ORCID: https://orcid.org/0000-0003-0554-9273, Hiscock, KM ORCID: https://orcid.org/0000-0003-4505-1496, Reid, BJ ORCID: https://orcid.org/0000-0002-9613-979X, Evers, A and Ward, S (2008) Creating a digital representation of the water table in a sandstone aquifer. In: GIS for Environmental Decision-Making. CRC Press, Boca Raton, Florida, pp. 101-115.

Robinson, C ORCID: https://orcid.org/0000-0003-3033-4565 (2008) Heterotrophic bacterial respiration. In: Microbial Ecology of the Oceans. Wiley, pp. 299-334.