Items where Research Group is "Computational Biology

Article

Bastkowski, Sarah, Mapleson, Daniel, Spillner, Andreas, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Balvočiūtė, Monika and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution. Bioinformatics, 34 (6). 1056–1057. ISSN 1367-4803

Bordewich, Magnus, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2018) Recovering normal networks from shortest inter-taxa distance information. Journal of Mathematical Biology, 77 (3). 571–594. ISSN 0303-6812

Francis, Andrew, Huber, Katharina and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Tree-based unrooted phylogenetic networks. Bulletin of Mathematical Biology, 80 (2). 404–416. ISSN 0092-8240

Francis, Andrew, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Bounds for phylogenetic network space metrics. Journal of Mathematical Biology, 76 (5). 1229–1248. ISSN 0303-6812

Francis, Andrew and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution. Journal of Theoretical Biology, 446. pp. 160-167. ISSN 0022-5193

Greenman, Chris D. (2018) Doi-Peliti path integral methods for stochastic systems with partial exclusion. Physica A: Statistical Mechanics and Its Applications, 505. pp. 211-221. ISSN 0378-4371

Grunewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2018) Combinatorial properties of triplet covers for binary trees. Advances in Applied Mathematics, 99. pp. 59-82. ISSN 0196-8858

Huber, Katharina and Scholz, Guillaume (2018) Beyond representing orthology relations by trees. Algorithmica, 80 (1). 73–103. ISSN 0178-4617

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2018) Geometric medians in reconciliation spaces of phylogenetic trees. Information Processing Letters, 136. pp. 96-101. ISSN 0020-0190

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Quarnet inference rules for level-1 networks. Bulletin of Mathematical Biology, 80 (8). 2137–2153. ISSN 0092-8240

Kelk, Steven, Stamoulis, Georgios and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Treewidth distance on phylogenetic trees. Theoretical Computer Science, 731. pp. 99-117. ISSN 0304-3975

Luca, Bogdan-Alexandru, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794, Edwards, Dylan R. ORCID: https://orcid.org/0000-0002-3292-2064, Edward, Sandra, Whitaker, Hayley C., Merson, Sue, Denis, Nening, Cooper, Rosalin A., Hazell, Steven, Warren, Anne Y., Eeles, Rosalind, Lynch, Andy G., Ross-Adams, Helen, Lamb, Alastair D., Neal, David E., Sethia, Krishna, Mills, Robert D, Ball, Richard Y., Curley, Helen, Clark, Jeremy, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 and The CancerMap Group (2018) DESNT: a poor prognosis category of human prostate cancer. European Urology Focus, 4 (6). pp. 842-850. ISSN 2405-4569

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, Andreas and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) UPGMA and the normalized equidistant minimum evolution problem. Theoretical Computer Science, 721. pp. 1-15. ISSN 0304-3975

Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Thody, Joshua, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. Bioinformatics, 34 (19). 3382–3384. ISSN 1367-4803

Thody, Joshua, Folkes, Leighton, Medina-Calzada, Zahara, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) PAREsnip2: A tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. Nucleic Acids Research, 46 (17). 8730–8739. ISSN 0305-1048

Veevers, Ruth and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2018) Morphing and docking visualisation of biomolecular structures using multi-dimensional scaling. Journal of Molecular Graphics and Modelling, 82. pp. 108-116. ISSN 1093-3263

Wedge, David C., Gundem, Gunes, Mitchell, Thomas, Woodcock, Dan J., Martincorena, Inigo, Ghori, Mohammed, Zamora, Jorge, Butler, Adam, Whitaker, Hayley, Kote-Jarai, Zsofia, Alexandrov, Ludmil B., Van Loo, Peter, Massie, Charlie E., Dentro, Stefan, Warren, Anne Y., Verrill, Clare, Berney, Dan M., Dennis, Nening, Merson, Sue, Hawkins, Steve, Howat, William, Lu, Yong-Jie, Lambert, Adam, Kay, Jonathan, Kremeyer, Barbara, Karaszi, Katalin, Luxton, Hayley, Camacho, Niedzica, Marsden, Luke, Edwards, Sandra, Matthews, Lucy, Bo, Valeria, Leongamornlert, Daniel, McLaren, Stuart, Ng, Anthony, Yu, Yongwei, Zhang, Hongwei, Dadaev, Tokhir, Thomas, Sarah, Easton, Douglas F., Ahmed, Mahbubl, Bancroft, Elizabeth, Fisher, Cyril, Livni, Naomi, Nicol, David, Tavaré, Simon, Gill, Pelvender, Greenman, Christopher, Khoo, Vincent, Van As, Nicholas, Kumar, Pardeep, Ogden, Christopher, Cahill, Declan, Thompson, Alan, Mayer, Erik, Rowe, Edward, Dudderidge, Tim, Gnanapragasam, Vincent, Shah, Nimish C., Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Teague, Jon, Hazell, Steven, Corbishley, Cathy, de Bono, Johann, Attard, Gerhardt, Isaacs, William, Visakorpi, Tapio, Fraser, Michael, Boutros, Paul C., Bristow, Robert G., Workman, Paul, Sander, Chris, Hamdy, Freddie C., Futreal, Andrew, McDermott, Ultan, Al-Lazikani, Bissan, Lynch, Andrew G., Bova, G. Steven, Foster, Christopher S., Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794, Neal, David E., Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 and Eeles, Rosalind A. (2018) Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets. Nature Genetics, 50. 682–692. ISSN 1061-4036

Yang, Jialiang, Liao, Bo, Ye, Jianqiang and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Special Issue on “Computational Tools for Investigating Pathogen, Pathogen-Host Interaction, and Infectious Disease”. Canadian Journal of Infectious Diseases and Medical Microbiology, 2018. ISSN 1712-9532

van Iersel, Leo and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Leaf-reconstructibility of phylogenetic networks. SIAM Journal on Discrete Mathematics, 32 (3). 2047–2066. ISSN 0895-4801

Book Section

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2018) Reconstructing the History of Syntenies Through Super-Reconciliation. In: Comparative Genomics. Lecture Notes in Computer Science, 11183 . Springer, pp. 179-195. ISBN 978-3-030-00833-8