Items where Research Group is "Computational Biology

Published

Bastkowski, Sarah, Mapleson, Daniel, Spillner, Andreas, Wu, Taoyang, Balvočiūtė, Monika and Moulton, Vincent (2018) SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution. Bioinformatics, 34 (6). 1056–1057. ISSN 1367-4803

Bordewich, Magnus, Huber, Katharina T., Moulton, Vincent and Semple, Charles (2018) Recovering normal networks from shortest inter-taxa distance information. Journal of Mathematical Biology, 77 (3). 571–594. ISSN 0303-6812

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2018) Reconstructing the History of Syntenies Through Super-Reconciliation. In: Comparative Genomics. Lecture Notes in Computer Science, 11183 . Springer, pp. 179-195. ISBN 978-3-030-00833-8

Francis, Andrew, Huber, Katharina and Moulton, Vincent (2018) Tree-based unrooted phylogenetic networks. Bulletin of Mathematical Biology, 80 (2). 404–416. ISSN 0092-8240

Francis, Andrew, Huber, Katharina T., Moulton, Vincent and Wu, Taoyang (2018) Bounds for phylogenetic network space metrics. Journal of Mathematical Biology, 76 (5). 1229–1248. ISSN 0303-6812

Francis, Andrew and Moulton, Vincent (2018) Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution. Journal of Theoretical Biology, 446. pp. 160-167. ISSN 0022-5193

Greenman, Chris D. (2018) Doi-Peliti path integral methods for stochastic systems with partial exclusion. Physica A: Statistical Mechanics and Its Applications, 505. pp. 211-221. ISSN 0378-4371

Grunewald, Stefan, Huber, Katharina T., Moulton, Vincent and Steel, Mike (2018) Combinatorial properties of triplet covers for binary trees. Advances in Applied Mathematics, 99. pp. 59-82. ISSN 0196-8858

Huber, Katharina and Scholz, Guillaume (2018) Beyond representing orthology relations by trees. Algorithmica, 80 (1). 73–103. ISSN 0178-4617

Huber, Katharina T., Moulton, Vincent, Sagot, Marie-France and Sinaimeri, Blerina (2018) Geometric medians in reconciliation spaces of phylogenetic trees. Information Processing Letters, 136. pp. 96-101. ISSN 0020-0190

Huber, Katharina T., Moulton, Vincent, Semple, Charles and Wu, Taoyang (2018) Quarnet inference rules for level-1 networks. Bulletin of Mathematical Biology, 80 (8). 2137–2153. ISSN 0092-8240

Kelk, Steven, Stamoulis, Georgios and Wu, Taoyang (2018) Treewidth distance on phylogenetic trees. Theoretical Computer Science, 731. pp. 99-117. ISSN 0304-3975

Luca, Bogdan-Alexandru, Brewer, Daniel S., Edwards, Dylan R., Edward, Sandra, Whitaker, Hayley C., Merson, Sue, Denis, Nening, Cooper, Rosalin A., Hazell, Steven, Warren, Anne Y., Eeles, Rosalind, Lynch, Andy G., Ross-Adams, Helen, Lamb, Alastair D., Neal, David E., Sethia, Krishna, Mills, Robert D, Ball, Richard Y., Curley, Helen, Clark, Jeremy, Moulton, Vincent and Cooper, Colin S. and The CancerMap Group (2018) DESNT: a poor prognosis category of human prostate cancer. European Urology Focus, 4 (6). pp. 842-850. ISSN 2405-4569

McMullan, Mark, Rafiqi, Maryam, Kaithakottil, Gemy, Clavijo, Bernardo J., Bilham, Lorelei, Orton, Elizabeth, Percival-Alwyn, Lawrence, Ward, Ben J., Edwards, Anne, Saunders, Diane G.O., Garcia Accinelli, Gonzalo, Wright, Jonathan, Verweij, Walter, Koutsovoulos, Georgios, Yoshida, Kentaro, Hosoya, Tsuyoshi, Williamson, Louisa, Jennings, Philip, Ioos, Renaud, Husson, Claude, Hietala, Ari M., Vivian-Smith, Adam, Solheim, Halvor, MaCclean, Dan, Fosker, Christine, Hall, Neil, Brown, James K. M., Swarbreck, David, Blaxter, Mark, Downie, J. Allan and Clark, Matthew D. (2018) The ash dieback invasion of Europe was founded by two genetically divergent individuals. Nature Ecology and Evolution, 2 (6). pp. 1000-1008. ISSN 2397-334X

Moulton, Vincent, Spillner, Andreas and Wu, Taoyang (2018) UPGMA and the normalized equidistant minimum evolution problem. Theoretical Computer Science, 721. pp. 1-15. ISSN 0304-3975

Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon, Thody, Joshua, Dalmay, Tamas and Moulton, Vincent (2018) The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. Bioinformatics, 34 (19). 3382–3384. ISSN 1367-4803

Thody, Joshua, Folkes, Leighton, Medina-Calzada, Zahara, Xu, Ping, Dalmay, Tamas and Moulton, Vincent (2018) PAREsnip2: A tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. Nucleic Acids Research, 46 (17). 8730–8739. ISSN 0305-1048

Veevers, Ruth and Hayward, Steven (2018) Morphing and docking visualisation of biomolecular structures using multi-dimensional scaling. Journal of Molecular Graphics and Modelling, 82. pp. 108-116. ISSN 1093-3263

Wedge, David C., Gundem, Gunes, Mitchell, Thomas, Woodcock, Dan J., Martincorena, Inigo, Ghori, Mohammed, Zamora, Jorge, Butler, Adam, Whitaker, Hayley, Kote-Jarai, Zsofia, Alexandrov, Ludmil B., Van Loo, Peter, Massie, Charlie E., Dentro, Stefan, Warren, Anne Y., Verrill, Clare, Berney, Dan M., Dennis, Nening, Merson, Sue, Hawkins, Steve, Howat, William, Lu, Yong-Jie, Lambert, Adam, Kay, Jonathan, Kremeyer, Barbara, Karaszi, Katalin, Luxton, Hayley, Camacho, Niedzica, Marsden, Luke, Edwards, Sandra, Matthews, Lucy, Bo, Valeria, Leongamornlert, Daniel, McLaren, Stuart, Ng, Anthony, Yu, Yongwei, Zhang, Hongwei, Dadaev, Tokhir, Thomas, Sarah, Easton, Douglas F., Ahmed, Mahbubl, Bancroft, Elizabeth, Fisher, Cyril, Livni, Naomi, Nicol, David, Tavaré, Simon, Gill, Pelvender, Greenman, Christopher, Khoo, Vincent, Van As, Nicholas, Kumar, Pardeep, Ogden, Christopher, Cahill, Declan, Thompson, Alan, Mayer, Erik, Rowe, Edward, Dudderidge, Tim, Gnanapragasam, Vincent, Shah, Nimish C., Raine, Keiran, Jones, David, Menzies, Andrew, Stebbings, Lucy, Teague, Jon, Hazell, Steven, Corbishley, Cathy, de Bono, Johann, Attard, Gerhardt, Isaacs, William, Visakorpi, Tapio, Fraser, Michael, Boutros, Paul C., Bristow, Robert G., Workman, Paul, Sander, Chris, Hamdy, Freddie C., Futreal, Andrew, McDermott, Ultan, Al-Lazikani, Bissan, Lynch, Andrew G., Bova, G. Steven, Foster, Christopher S., Brewer, Daniel S., Neal, David E., Cooper, Colin S. and Eeles, Rosalind A. (2018) Sequencing of prostate cancers identifies new cancer genes, routes of progression and drug targets. Nature Genetics, 50. 682–692. ISSN 1061-4036

Wu, Jia, Collins, Samuel R. A., Elliston, Adam, Wellner, Nikolaus, Dicks, Jo, Roberts, Ian N. and Waldron, Keith W. (2018) Release of cell wall phenolic esters during hydrothermal pretreatment of rice husk and rice straw. Biotechnology for Biofuels, 11.

Yang, Jialiang, Liao, Bo, Ye, Jianqiang and Wu, Taoyang (2018) Special Issue on “Computational Tools for Investigating Pathogen, Pathogen-Host Interaction, and Infectious Disease”. Canadian Journal of Infectious Diseases and Medical Microbiology, 2018. ISSN 1712-9532

van Iersel, Leo and Moulton, Vincent (2018) Leaf-reconstructibility of phylogenetic networks. SIAM Journal on Discrete Mathematics, 32 (3). 2047–2066. ISSN 0895-4801