Items where Research Group is "Computational Biology

B

Bang, S., Koolen, J. and Moulton, V. (2009) There are only finitely many regular near polygons and geodetic distance-regular graphs with fixed valency. Journal fur die reine und angewandte Mathematik, 635. pp. 213-235.

Bordewich, Magnus, Gascuel, Olivier, Huber, Katharina T. and Moulton, Vincent (2009) Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 110-117. ISSN 1545-5963

Buchheim, Christoph, Cameron, Peter J. and Wu, Taoyang (2009) On the subgroup distance problem. Discrete Mathematics, 309 (4). pp. 962-968. ISSN 1872-681X

C

Camargo, Anyela V. and Kim, Jan T. (2009) An Optimisation-Driven Method to Discriminate Gene Regulatory Network Topologies (Extended Abstract),. In: Advances in Artificial Life (ECAL 2009), 2009-01-01.

Cawley, G. C. (2009) Causal & non-causal feature selection for ridge regression. In: Journal of Machine Learning Research: Workshop and Conference Proceedings, 2008-06-01 - 2008-06-06.

D

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent (2009) A graph-theoretical invariant of topological spaces. Applied Mathematics Letters, 22 (2). pp. 159-162.

Dress, Andreas W. M., Moulton, Vincent, Spillner, Andreas and Wu, Taoyang (2009) Barriers in metric spaces. Applied Mathematics Letters, 22 (8). pp. 1150-1153.

G

Gruenewald, S, Moulton, V and Spillner, A (2009) Consistency of the QNet algorithm for generating planar split graphs from weighted quartets. Discrete Applied Mathematics, 157 (10). pp. 2325-2334.

Grünewald, Stefan, Huber, Katharina T., Moulton, Vincent, Semple, Charles and Spillner, Andreas (2009) Characterizing weak compatibility in terms of weighted quartets. Advances in Applied Mathematics, 42 (3). pp. 329-341. ISSN 0196-8858

Grünewald, Stefan and Moulton, Vincent (2009) Maximum parsimony for tree mixtures. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 97-102. ISSN 1545-5963

K

Kim, J.T. and Polani, Daniel (2009) Exploring Empowerment as a Basis for Quantifying Sustainability. In: IEEE Symposium on Artificial Life, Nashville, TN, 2009-01-01.

Koolen, Jack, Lesser, Alice and Moulton, Vincent (2009) Optimal realizations of generic 5-point metrics. European Journal of Combinatorics, 30 (5). pp. 1164-1171. ISSN 0195-6698

L

Leggett, Richard M., Grandison, Scott, Morris, Richard J., Kelemen, Gabriella and Moulton, Vincent (2009) Statistical analysis of the growth and morphology of the filamentous microbe Streptomyces coelicolor. In: Statistical Tools for Challenges in Bioinformatics, 2009-07-07 - 2009-07-09.

Lemey, Philippe, Lott, Martin, Martin, Darren P. and Moulton, Vincent (2009) Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. BMC Bioinformatics, 10. ISSN 1471-2105

Lott, Martin, Spillner, Andreas, Huber, Katharina T. and Moulton, Vincent (2009) PADRE: A Package for Analyzing and Displaying Reticulate Evolution. Bioinformatics, 25 (9). pp. 1199-1200. ISSN 1367-4803

Lott, Martin, Spillner, Andreas, Huber, Katharina T., Petri, Anna, Oxelman, Bengt and Moulton, Vincent (2009) Inferring polyploid phylogenies from multiply-labeled gene trees. BMC Evolutionary Biology, 9. ISSN 1471-2148

M

Mahoney, C L, Choudhury, B, Davies, H, Edkins, S, Greenman, C, Haaften, G Van, Mironenko, T, Santarius, T, Stevens, C, Stratton, M R and Futreal, P A (2009) LKB1/KRAS mutant lung cancers constitute a genetic subset of NSCLC with increased sensitivity to MAPK and mTOR signalling inhibition. British Journal of Cancer, 100 (2). pp. 370-375. ISSN 1532-1827

Moulton, Vincent and Spillner, Andreas (2009) Phylogenetic diversity and the maximum coverage problem. Applied Mathematics Letters, 22 (10). pp. 1496-1499.

N

Nishima, Wataru, Qi, Guoying, Hayward, Steven and Kitao, Akio (2009) DTA: Dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins. Bioinformatics, 25 (5). pp. 628-635. ISSN 1460-2059

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Poornam, Guru Prasad, Matsumoto, Atsushi, Ishida, Hisashi and Hayward, Steven (2009) A method for the analysis of domain movements in large biomolecular complexes. Proteins: Structure, Function, and Bioinformatics, 76 (1). pp. 201-212. ISSN 0887-3585

Q

Qi, Guoying and Hayward, Steven (2009) Database of ligand-induced domain movements in enzymes. BMC Structural Biology, 9. ISSN 1472-6807

R

Rathjen, Tina, Pais, Helio, Sweetman, Dylan, Moulton, Vincent, Munsterberg, Andrea and Dalmay, Tamas (2009) High throughput sequencing of microRNAs in chicken somites. FEBS Letters, 583 (9). pp. 1422-1426. ISSN 1873-3468

S

Schwach, Frank, Moxon, Simon, Moulton, Vincent and Dalmay, Tamas (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Briefings in Functional Genomics and Proteomics, 8 (6). pp. 472-481. ISSN 1473-9550

Stephens, Philip J., McBride, David J., Lin, Meng-Lay, Varela, Ignacio, Pleasance, Erin D., Simpson, Jared T., Stebbings, Lucy A., Leroy, Catherine, Edkins, Sarah, Mudie, Laura J., Greenman, Chris D., Jia, Mingming, Latimer, Calli, Teague, Jon W., Lau, King Wai, Burton, John, Quail, Michael A., Swerdlow, Harold, Churcher, Carol, Natrajan, Rachael, Sieuwerts, Anieta M., Martens, John W. M., Silver, Daniel P., Langerød, Anita, Russnes, Hege E. G., Foekens, John A., Reis-Filho, Jorge S., van 't Veer, Laura, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Campbell, Peter J., Futreal, P. Andrew and Stratton, Michael R. (2009) Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature, 462 (7276). pp. 1005-1010. ISSN 1476-4687

Stocks, Matthew B., Hayward, Steven and Laycock, Stephen D. (2009) Interacting with the biomolecular solvent accessible surface via a haptic feedback device. BMC Structural Biology, 9. ISSN 1472-6807

T

Tarpey, Patrick S., Smith, Raffaella, Pleasance, Erin, Whibley, Annabel, Edkins, Sarah, Hardy, Claire, O'Meara, Sarah, Latimer, Calli, Dicks, Ed, Menzies, Andrew, Stephens, Phil, Blow, Matt, Greenman, Christopher, Xue, Yali, Tyler-Smith, Chris, Thompson, Deborah, Gray, Kristian, Andrews, Jenny, Barthorpe, Syd, Buck, Gemma, Cole, Jennifer, Dunmore, Rebecca, Jones, David, Maddison, Mark, Mironenko, Tatiana, Turner, Rachel, Turrell, Kelly, Varian, Jennifer, West, Sofie, Widaa, Sara, Wray, Paul, Teague, Jon, Butler, Adam, Jenkinson, Andrew, Jia, Mingming, Richardson, David, Shepherd, Rebecca, Wooster, Richard, Tejada, M. Isabel, Martinez, Francisco, Carvill, Gemma, Goliath, Rene, de Brouwer, Arjan P. M., van Bokhoven, Hans, van Esch, Hilde, Chelly, Jamel, Raynaud, Martine, Ropers, Hans-Hilger, Abidi, Fatima E., Srivastava, Anand K., Cox, James, Luo, Ying, Mallya, Uma, Moon, Jenny, Parnau, Josef, Mohammed, Shehla, Tolmie, John L., Shoubridge, Cheryl, Corbett, Mark, Gardner, Alison, Haan, Eric, Rujirabanjerd, Sinitdhorn, Shaw, Marie, Vandeleur, Lucianne, Fullston, Tod, Easton, Douglas F., Boyle, Jackie, Partington, Michael, Hackett, Anna, Field, Michael, Skinner, Cindy, Stevenson, Roger E., Bobrow, Martin, Turner, Gillian, Schwartz, Charles E., Gecz, Jozef, Raymond, F. Lucy, Futreal, P. Andrew and Stratton, Michael R. (2009) A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. Nature Genetics, 41 (5). pp. 535-543. ISSN 1061-4036

V

Van Haaften, Gijs, Dalgliesh, Gillian L, Davies, Helen, Chen, Lina, Bignell, Graham, Greenman, Christopher, Edkins, Sarah, Hardy, Claire, O'meara, Sarah, Teague, Jon, Butler, Adam, Hinton, Jonathan, Latimer, Calli, Andrews, Jenny, Barthorpe, Syd, Beare, Dave, Buck, Gemma, Campbell, Peter J, Cole, Jennifer, Forbes, Simon, Jia, Mingming, Jones, David, Kok, Chai Yin, Leroy, Catherine, Lin, Meng-lay, Mcbride, David J, Maddison, Mark, Maquire, Simon, Mclay, Kirsten, Menzies, Andrew, Mironenko, Tatiana, Mulderrig, Lee, Mudie, Laura, Pleasance, Erin, Shepherd, Rebecca, Smith, Raffaella, Stebbings, Lucy, Stephens, Philip, Tang, Gurpreet, Tarpey, Patrick S, Turner, Rachel, Turrell, Kelly, Varian, Jennifer, West, Sofie, Widaa, Sara, Wray, Paul, Collins, V Peter, Ichimura, Koichi, Law, Simon, Wong, John, Yuen, Siu Tsan, Leung, Suet Yi, Tonon, Giovanni, Depinho, Ronald A, Tai, Yu-tzu, Anderson, Kenneth C, Kahnoski, Richard J, Massie, Aaron, Khoo, Sok Kean, Teh, Bin Tean, Stratton, Michael R and Futreal, P Andrew (2009) Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer. Nature Genetics, 41 (5). pp. 521-523. ISSN 1061-4036

W

Wu, Taoyang, Cameron, Peter and Riis, Søren (2009) On the guessing number of shift graphs. Journal of Discrete Algorithms, 7 (2). pp. 220-226.

Wu, Taoyang, Moulton, Vincent and Steel, Mike (2009) Refining phylogenetic trees given additional data: An algorithm based on parsimony. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 118-125. ISSN 1545-5963

Y

Yura, Kei and Hayward, Steven (2009) The interwinding nature of protein-protein interfaces and its implication for protein complex formation. Bioinformatics, 25 (23). pp. 3108-3113. ISSN 1367-4803