Items where Research Group is "Computational Biology

B

Bang, S., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2009) There are finitely many regular near polygons and geodetic distance-regular graphs with fixed valency. Journal fur die reine und angewandte Mathematik. pp. 213-235.

Bordewich, Magnus, Gascuel, Olivier, Huber, Katharina T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Consistency of topological moves based on the balanced minimum evolution principle of phylogenetic inference. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 110-117. ISSN 1545-5963

Buchheim, Christoph, Cameron, Peter J. and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2009) On the subgroup distance problem. Discrete Mathematics, 309 (4). pp. 962-968. ISSN 1872-681X

C

Camargo, Anyela V. and Kim, Jan T. (2009) An Optimisation-Driven Method to Discriminate Gene Regulatory Network Topologies (Extended Abstract),. In: Advances in Artificial Life (ECAL 2009), 2009-01-01.

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 (2009) Causal & non-causal feature selection for ridge regression. In: Journal of Machine Learning Research: Workshop and Conference Proceedings, 2008-06-01 - 2008-06-06.

D

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) A graph-theoretical invariant of topological spaces. Applied Mathematics Letters, 22 (2). pp. 159-162.

Dress, Andreas W. M., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, Andreas and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2009) Barriers in metric spaces. Applied Mathematics Letters, 22 (8). pp. 1150-1153.

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Gruenewald, S, Moulton, V ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, A (2009) Consistency of the QNet algorithm for generating planar split graphs from weighted quartets. Discrete Applied Mathematics, 157 (10). pp. 2325-2334.

Grünewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Spillner, Andreas (2009) Characterizing weak compatibility in terms of weighted quartets. Advances in Applied Mathematics, 42 (3). pp. 329-341. ISSN 0196-8858

Grünewald, Stefan and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Maximum parsimony for tree mixtures. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 97-102. ISSN 1545-5963

K

Kim, J.T. and Polani, Daniel (2009) Exploring Empowerment as a Basis for Quantifying Sustainability. In: IEEE Symposium on Artificial Life, Nashville, TN, 2009-01-01.

Koolen, Jack, Lesser, Alice and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Optimal realizations of generic 5-point metrics. European Journal of Combinatorics, 30 (5). pp. 1164-1171. ISSN 0195-6698

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Leggett, Richard M., Grandison, Scott, Morris, Richard J., Kelemen, Gabriella and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Statistical analysis of the growth and morphology of the filamentous microbe Streptomyces coelicolor. In: Statistical Tools for Challenges in Bioinformatics, 2009-07-07 - 2009-07-09.

Lemey, Philippe, Lott, Martin, Martin, Darren P. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Identifying recombinants in human and primate immunodeficiency virus sequence alignments using quartet scanning. BMC Bioinformatics, 10. ISSN 1471-2105

Lott, Martin, Spillner, Andreas, Huber, Katharina T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) PADRE: A Package for Analyzing and Displaying Reticulate Evolution. Bioinformatics, 25 (9). pp. 1199-1200. ISSN 1367-4803

Lott, Martin, Spillner, Andreas, Huber, Katharina T., Petri, Anna, Oxelman, Bengt and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2009) Inferring polyploid phylogenies from multiply-labeled gene trees. BMC Evolutionary Biology, 9. ISSN 1471-2148

M

Mahoney, C L, Choudhury, B, Davies, H, Edkins, S, Greenman, C, Haaften, G Van, Mironenko, T, Santarius, T, Stevens, C, Stratton, M R and Futreal, P A (2009) LKB1/KRAS mutant lung cancers constitute a genetic subset of NSCLC with increased sensitivity to MAPK and mTOR signalling inhibition. British Journal of Cancer, 100 (2). pp. 370-375. ISSN 1532-1827

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2009) The maximum coverage problem and strongly greedy hypergraphs. Applied Mathematics Letters, 22 (10). pp. 1496-1499.

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Nishima, Wataru, Qi, Guoying, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Kitao, Akio (2009) DTA: Dihedral transition analysis for characterization of the effects of large main-chain dihedral changes in proteins. Bioinformatics, 25 (5). pp. 628-635. ISSN 1460-2059

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Poornam, Guru Prasad, Matsumoto, Atsushi, Ishida, Hisashi and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2009) A method for the analysis of domain movements in large biomolecular complexes. Proteins: Structure, Function, and Bioinformatics, 76 (1). pp. 201-212. ISSN 0887-3585

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Qi, Guoying and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2009) Database of ligand-induced domain movements in enzymes. BMC Structural Biology, 9. ISSN 1472-6807

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Rathjen, Tina, Pais, Helio, Sweetman, Dylan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Munsterberg, Andrea ORCID: https://orcid.org/0000-0002-4577-4240 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) High throughput sequencing of microRNAs in chicken somites. FEBS Letters, 583 (9). pp. 1422-1426. ISSN 1873-3468

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Schwach, Frank, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2009) Deciphering the diversity of small RNAs in plants: the long and short of it. Briefings in Functional Genomics and Proteomics, 8 (6). pp. 472-481. ISSN 1473-9550

Stephens, Philip J., McBride, David J., Lin, Meng-Lay, Varela, Ignacio, Pleasance, Erin D., Simpson, Jared T., Stebbings, Lucy A., Leroy, Catherine, Edkins, Sarah, Mudie, Laura J., Greenman, Chris D., Jia, Mingming, Latimer, Calli, Teague, Jon W., Lau, King Wai, Burton, John, Quail, Michael A., Swerdlow, Harold, Churcher, Carol, Natrajan, Rachael, Sieuwerts, Anieta M., Martens, John W. M., Silver, Daniel P., Langerød, Anita, Russnes, Hege E. G., Foekens, John A., Reis-Filho, Jorge S., van 't Veer, Laura, Richardson, Andrea L., Børresen-Dale, Anne-Lise, Campbell, Peter J., Futreal, P. Andrew and Stratton, Michael R. (2009) Complex landscapes of somatic rearrangement in human breast cancer genomes. Nature, 462 (7276). pp. 1005-1010. ISSN 1476-4687

Stocks, Matthew B., Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen D. (2009) Interacting with the biomolecular solvent accessible surface via a haptic feedback device. BMC Structural Biology, 9. ISSN 1472-6807

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Tarpey, Patrick S, Smith, Raffaella, Pleasance, Erin, Whibley, Annabel, Edkins, Sarah, Hardy, Claire, O'meara, Sarah, Latimer, Calli, Dicks, Ed, Menzies, Andrew, Stephens, Phil, Blow, Matt, Greenman, Christopher, Xue, Yali, Tyler-smith, Chris, Thompson, Deborah, Gray, Kristian, Andrews, Jenny, Barthorpe, Syd, Buck, Gemma, Cole, Jennifer, Dunmore, Rebecca, Jones, David, Maddison, Mark, Mironenko, Tatiana, Turner, Rachel, Turrell, Kelly, Varian, Jennifer, West, Sofie, Widaa, Sara, Wray, Paul, Teague, Jon, Butler, Adam, Jenkinson, Andrew, Jia, Mingming, Richardson, David ORCID: https://orcid.org/0000-0001-7226-9074, Shepherd, Rebecca, Wooster, Richard, Tejada, M Isabel, Martinez, Francisco, Carvill, Gemma, Goliath, Rene, De Brouwer, Arjan P M, Van Bokhoven, Hans, Van Esch, Hilde, Chelly, Jamel, Raynaud, Martine, Ropers, Hans-hilger, Abidi, Fatima E, Srivastava, Anand K, Cox, James, Luo, Ying, Mallya, Uma, Moon, Jenny, Parnau, Josef, Mohammed, Shehla, Tolmie, John L, Shoubridge, Cheryl, Corbett, Mark, Gardner, Alison, Haan, Eric, Rujirabanjerd, Sinitdhorn, Shaw, Marie, Vandeleur, Lucianne, Fullston, Tod, Easton, Douglas F, Boyle, Jackie, Partington, Michael, Hackett, Anna, Field, Michael, Skinner, Cindy, Stevenson, Roger E, Bobrow, Martin, Turner, Gillian, Schwartz, Charles E, Gecz, Jozef, Raymond, F Lucy, Futreal, P Andrew and Stratton, Michael R (2009) A systematic, large-scale resequencing screen of X-chromosome coding exons in mental retardation. Nature Genetics, 41 (5). pp. 535-543. ISSN 1061-4036

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Van Haaften, Gijs, Dalgliesh, Gillian L, Davies, Helen, Chen, Lina, Bignell, Graham, Greenman, Christopher, Edkins, Sarah, Hardy, Claire, O'meara, Sarah, Teague, Jon, Butler, Adam, Hinton, Jonathan, Latimer, Calli, Andrews, Jenny, Barthorpe, Syd, Beare, Dave, Buck, Gemma, Campbell, Peter J, Cole, Jennifer, Forbes, Simon, Jia, Mingming, Jones, David, Kok, Chai Yin, Leroy, Catherine, Lin, Meng-lay, Mcbride, David J, Maddison, Mark, Maquire, Simon, Mclay, Kirsten, Menzies, Andrew, Mironenko, Tatiana, Mulderrig, Lee, Mudie, Laura, Pleasance, Erin, Shepherd, Rebecca, Smith, Raffaella, Stebbings, Lucy, Stephens, Philip, Tang, Gurpreet, Tarpey, Patrick S, Turner, Rachel, Turrell, Kelly, Varian, Jennifer, West, Sofie, Widaa, Sara, Wray, Paul, Collins, V Peter, Ichimura, Koichi, Law, Simon, Wong, John, Yuen, Siu Tsan, Leung, Suet Yi, Tonon, Giovanni, Depinho, Ronald A, Tai, Yu-tzu, Anderson, Kenneth C, Kahnoski, Richard J, Massie, Aaron, Khoo, Sok Kean, Teh, Bin Tean, Stratton, Michael R and Futreal, P Andrew (2009) Somatic mutations of the histone H3K27 demethylase gene UTX in human cancer. Nature Genetics, 41 (5). pp. 521-523. ISSN 1061-4036

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Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Cameron, Peter and Riis, Søren (2009) On the guessing number of shift graphs. Journal of Discrete Algorithms, 7 (2). pp. 220-226.

Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2009) Refining phylogenetic trees given additional data: An algorithm based on parsimony. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 6 (1). pp. 118-125. ISSN 1545-5963

Y

Yura, Kei and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2009) The interwinding nature of protein-protein interfaces and its implication for protein complex formation. Bioinformatics, 25 (23). pp. 3108-3113. ISSN 1367-4803