Items where Author is "Hall, Neil"

Published

Stenhouse, George E., Keddy, Karen H., Bengtsson, Rebecca J., Hall, Neil, Smith, Anthony M., Thomas, Juno, Iturriza-Gómara, Miren and Baker, Kate S. (2023) The genomic epidemiology of shigellosis in South Africa. Nature Communications, 14. ISSN 2041-1723

McGowan, Jamie, Kilias, Estelle S., Alacid, Elisabet, Lipscombe, James, Jenkins, Benjamin H., Gharbi, Karim, Kaithakottil, Gemy G., Macaulay, Iain C., McTaggart, Seanna, Warring, Sally D., Richards, Thomas A., Hall, Neil and Swarbreck, David (2023) Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids. PLoS Genetics, 19 (10). ISSN 1553-7390

Bailey, Nicholas P., Shao, Yuxin, Du, Shaodua, Foster, Peter G., Fettweis, Jennifer, Hall, Neil, Wang, Zheng and Hirt, Robert P. (2023) Evolutionary conservation of Trichomonas-mycoplasma symbiosis across the host species barrier. Frontiers in Microbiology, 14. ISSN 1664-302X

Ebenezer, Thankgod Echezona, Low, Ross S., O'Neill, Ellis Charles, Huang, Ishuo, DeSimone, Antonio, Farrow, Scott C., Field, Robert A., Ginger, Michael L., Guerrero, Sergio Adrián, Hammond, Michael, Hampl, Vladimír, Horst, Geoff, Ishikawa, Takahiro, Karnkowska, Anna, Linton, Eric W., Myler, Peter, Nakazawa, Masami, Cardol, Pierre, Sánchez-Thomas, Rosina, Saville, Barry J., Shah, Mahfuzur R., Simpson, Alastair G. B., Sur, Aakash, Suzuki, Kengo, Tyler, Kevin M., Zimba, Paul V., Hall, Neil and Field, Mark C. (2022) Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world. Biology Open, 11 (11). ISSN 2046-6390

Bawn, Matt, Hernandez, Johana, Trampari, Eleftheria, Thilliez, Gaetan, Quince, Christopher, Webber, Mark A., Kingsley, Robert A., Hall, Neil and Macaulay, Iain C. (2022) Single-cell genomics reveals population structures from in vitro evolutionary studies of Salmonella. Microbial Genomics, 8 (9). ISSN 2057-5858

Gul, Lejla, Korcsmaros, Tamas and Hall, Neil (2022) Flaviviruses hijack the host microbiota to facilitate their transmission. Cell, 185 (14). pp. 2395-2397. ISSN 0092-8674

Bengtsson, Rebecca J., Simpkin, Adam J., Pulford, Caisey V., Low, Ross, Rasko, David A., Rigden, Daniel J., Hall, Neil, Barry, Eileen M., Tennant, Sharon M. and Baker, Kate S. (2022) Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs. Nature Microbiology, 7 (2). pp. 251-261. ISSN 2058-5276

Blaxter, Mark, Archibald, John M., Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Di Palma, Federica, Durbin, Richard, Edwards, Scott V., Graves, Jennifer A.M., Hackett, Kevin J., Hall, Neil, Jarvis, Erich D., Johnson, Rebecca N., Karlsson, Elinor K., Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K.N., Lindblad-Toh, Kerstin, Lopez, Jose V., Moran, Nancy A., Robinson, Gene E., Ryder, Oliver A., Shapiro, Beth, Soltis, Pamela S., Warnow, Tandy, Zhang, Guojie and Lewin, Harris A. (2022) Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America, 119 (4). ISSN 0027-8424

Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Bonet, Tomas Marques, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Palma, Federica Di, Fang, Qi, Haerty, Wilfried, Hall, Neil, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J., Liu, Xin, Lopez, Jose Victor, Myers, Eugene W., Pettersson, Olga Vinnere, Phillippy, Adam M., Poelchau, Monica F., Pruitt, Kim D., Rhie, Arang, Castilla-Rubio, Juan Carlos, Sahu, Sunil Kumar, Salmon, Nicholas A., Soltis, Pamela S., Swarbreck, David, Thibaud-Nissen, Françoise, Wang, Sibo, Wegrzyn, Jill L., Zhang, Guojie, Zhang, He, Lewin, Harris A. and Richards, Stephen (2022) Standards recommendations for the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America, 119 (4). ISSN 0027-8424

Lewin, Harris A., Richards, Stephen, Aiden, Erez Lieberman, Allende, Miguel L., Archibald, John M., Bálint, Miklós, Barker, Katharine B., Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L., Cai, Jing, Caperello, Nicolette D., Carlson, Keith, Castilla-Rubio, Juan Carlos, Chaw, Shu Miaw, Chen, Lei, Childers, Anna K., Coddington, Jonathan A., Conde, Dalia A., Corominas, Montserrat, Crandall, Keith A., Crawford, Andrew J., DiPalma, Federica, Durbin, Richard, Ebenezer, Thank God E., Edwards, Scott V., Fedrigo, Olivier, Flicek, Paul, Formenti, Giulio, Gibbs, Richard A., Gilbert, M. Thomas, Goldstein, Melissa M., Graves, Jennifer Marshall, Greely, Henry T., Grigoriev, Igor V., Hackett, Kevin J., Hall, Neil, Haussler, David, Helgen, Kristofer M., Hogg, Carolyn J., Isobe, Sachiko, Jakobsen, Kjetill Sigurd, Janke, Axel, Jarvis, Erich D., Johnson, Warren E., Jones, Steven J.M., Karlsson, Elinor K., Kersey, Paul J., Kim, Jin Hyoung, Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K.N., Leebens-Mack, James H., Li, Xueyan, Lindblad-Toh, Kerstin, Lopez, Jose V., Marques-Bonet, Tomas, Liu, Xin, Mazard, Sophie, Mazet, Jonna A.K., Mazzoni, Camila J., Myers, Eugene W., O’Neill, Rachel J., Paez, Sadye, Park, Hyun, Robinson, Gene E., Roquet, Cristina, Ryder, Oliver A., Sabir, Jamal S.M., Shaffer, H. Bradley, Shank, Timothy M., Sherkow, Jacob S., Soltis, Pamela S., Tang, Boping, Tedersoo, Leho, Uliano-Silva, Marcela, Wang, Kun, Wei, Xiaofeng, Wetzer, Regina, Wilson, Julia L., Xu, Xun, Yang, Huanming, Yoder, Anne D. and Zhang, Guojie (2022) The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America, 119 (4). ISSN 0027-8424

Gerasimov, Evgeny S., Afonin, Dmitry A., Korzhavina, Oksana A., Lukeš, Julius, Low, Ross, Hall, Neil, Tyler, Kevin, Yurchenko, Vyacheslav and Zimmer, Sara L. (2022) Mitochondrial RNA editing in Trypanoplasma borreli: new tools, new revelations. Computational and Structural Biotechnology Journal, 20. pp. 6388-6402. ISSN 2001-0370

Perez-Sepulveda, Blanca M., Heavens, Darren, Pulford, Caisey V., Predeus, Alexander V., Low, Ross, Dykes, Gregory F., Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Shearer, Neil, Costigan, Karl, Baker, Kate S., Feasey, Nicholas A., Hinton, Jay C. D. and Hall, Neil and The 10KSG consortium (2021) An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes. Genome Biology, 22 (1). ISSN 1474-760X

Sabir, Mumdooh J., Low, Ross, Hall, Neil, Kamli, Majid Rasool and Malik, Md. Zubbair (2021) A bioinformatics approach to identifying potential biomarkers for Cryptosporidium parvum: A coccidian parasite associated with fetal diarrhea. Vaccines, 9 (12). ISSN 2076-393X

Berger Gillam, Tara, Chin, Jeannette, Cossey, Sarah, Culley, Kirsty, Davidson, Rosemary, Edwards, Dylan, Gharbi, Karim, Goodwin, Nick, Hall, Neil, Hitchcock, Mark, Jupp, Orla, Lipscombe, James, Parr, Gerard, Shearer, Neil, Smith, Russell and Steel, Nicholas (2021) Phase 2 of the Norwich COVID-19 testing initiative: An evaluation. Journal of Public Health, 43 (4). e749–e750. ISSN 1741-3842

Kasumba, Irene N., Pulford, Caisey V., Perez Sepulveda, Blanca M., Sen, Sunil, Sayed, Nurulla, Permala-Booth, Jasnehta, Livio, Sofie, Heavens, Darren, Low, Ross, Hall, Neil, Roose, Anna, Powell, Helen, Farag, Tamer, Panchalingham, Sandra, Berkeley, Lynette, Nasrin, Dilruba, Blackwelder, William C., Wu, Yukun, Tamboura, Boubou, Sanogo, Doh, Onwuchekwa, Uma, Sow, Samba O., Ochieng, John B., Omore, Richard, Oundo, Joseph O., Breiman, Robert F., Mintz, Eric D., O'Reilly, Ciara E., Antonio, Martin, Saha, Debasish, Hossain, M. Jahangir, Mandomando, Inacio, Bassat, Quique, Alonso, Pedro L., Ramamurthy, T., Sur, Dipika, Qureshi, Shahida, Zaidi, Anita K. M., Hossain, Anowar, Faruque, Abu S. G., Nataro, James P., Kotloff, Karen L., Levine, Myron M., Hinton, Jay C. D. and Tennant, Sharon M. (2021) Characteristics of Salmonella recovered from stools of children enrolled in the Global Enteric Multicenter Study. Clinical Infectious Diseases, 73 (4). pp. 631-641. ISSN 1058-4838

Van Oosterhout, Cock, Stephenson, Jessica F., Weimer, Bart, Ly, Hinh, Hall, Neil and Tyler, Kevin M. (2021) COVID-19 adaptive evolution during the pandemic – Implications of new SARS-CoV-2 variants on public health policies. Virulence, 12 (1). pp. 2013-2016. ISSN 2150-5594

Žárský, Vojtěch, Klimeš, Vladimír, Pačes, Jan, Vlček, Čestmír, Hradilová, Miluše, Beneš, Vladimír, Nývltová, Eva, Hrdý, Ivan, Pyrih, Jan, Mach, Jan, Barlow, Lael, Stairs, Courtney W., Eme, Laura, Hall, Neil, Eliáš, Marek, Dacks, Joel B., Roger, Andrew and Tachezy, Jan (2021) The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba. Molecular Biology and Evolution, 38 (6). 2240–2259. ISSN 0737-4038

Li, Yan, Leveau, Aymeric, Zhao, Qiang, Feng, Qi, Lu, Hengyun, Miao, Jiashun, Xue, Zheyong, Martin, Azahara C., Wegel, Eva, Wang, Jing, Orme, Anastasia, Rey, Maria Dolores, Karafiátová, Miroslava, Vrána, Jan, Steuernagel, Burkhard, Joynson, Ryan, Owen, Charlotte, Reed, James, Louveau, Thomas, Stephenson, Michael J., Zhang, Lei, Huang, Xuehui, Huang, Tao, Fan, Danling, Zhou, Congcong, Tian, Qilin, Li, Wenjun, Lu, Yiqi, Chen, Jiaying, Zhao, Yan, Lu, Ying, Zhu, Chuanrang, Liu, Zhenhua, Polturak, Guy, Casson, Rebecca, Hill, Lionel, Moore, Graham, Melton, Rachel, Hall, Neil, Wulff, Brande B. H., Doležel, Jaroslav, Langdon, Tim, Han, Bin and Osbourn, Anne (2021) Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals. Nature Communications, 12. ISSN 2041-1723

Kirkwood, Mark, Vohra, Prerna, Bawn, Matt, Thilliez, Gaëtan, Pye, Hannah, Tanner, Jennifer, Chintoan-Uta, Cosmin, Branchu, Priscilla, Petrovska, Liljana, Dallman, Timothy, Hall, Neil, Stevens, Mark P. and Kingsley, Robert A. (2021) Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential. Communications Biology, 4 (1). ISSN 2399-3642

Gilroy, Rachel, Ravi, Anuradha, Getino, Maria, Pursley, Isabella, Horton, Daniel L., Alikhan, Nabil-Fareed, Baker, Dave, Gharbi, Karim, Hall, Neil, Watson, Mick, Adriaenssens, Evelien M., Foster-Nyarko, Ebenezer, Jarju, Sheikh, Secka, Arss, Antonio, Martin, Oren, Aharon, Chaudhuri, Roy R., La Ragione, Roberto, Hildebrand, Falk and Pallen, Mark J. (2021) Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ, 9. ISSN 2167-8359

Staton, Gareth J., Clegg, Simon R., Ainsworth, Stuart, Armstrong, Stuart, Carter, Stuart D., Radford, Alan D., Darby, Alistair, Wastling, Jonathan, Hall, Neil and Evans, Nicholas J. (2021) Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms. PLoS Pathogens, 17 (3). ISSN 1553-7374

König, Constantin, Honecker, Barbara, Wilson, Ian W., Weedall, Gareth D., Hall, Neil, Roeder, Thomas, Metwally, Nahla Galal and Bruchhaus, Iris (2021) Taxon-specific proteins of the pathogenic entamoeba species E. histolytica and E. nuttalli. Frontiers in Cellular and Infection Microbiology, 11. ISSN 2235-2988

Gillam, T. Berger, Cole, J., Gharbi, K., Angiolini, E., Barker, T., Bickerton, P., Brabbs, T., Chin, J., Coen, E., Cossey, S., Davey, R., Davidson, R., Durrant, A., Edwards, D., Hall, N., Henderson, S., Hitchcock, M., Irish, N., Lipscombe, J., Jones, G., Parr, G., Rushworth, S., Shearer, N., Smith, R. and Steel, N. (2021) Norwich COVID-19 testing initiative pilot: evaluating the feasibility of asymptomatic testing on a university campus. Journal of Public Health, 43 (1). pp. 82-88. ISSN 1741-3842

Hajrah, Nahid H., Rabah, Samar O., Alghamdi, Mohammed K., Atef, Ahmed, Edris, Sherif, Alhebshi, Alawiah M., Hassan, Sabah M., Alzahrani, Dhafer A., Bahieldin, Ahmed, Mutwakil, Mohammed H. Z., Alqurashi, Yaser E., Al-Zahrani, Hassan S., Abo-Aba, Salah E. M., Jansen, Robert K., Sabir, Jamal S. M., Hall, Neil and Kamli, Majid Rasool (2021) Transcriptional analysis of Rhazya stricta in response to jasmonic acid. Electronic Journal of Biotechnology, 50. pp. 68-76. ISSN 0717-3458

Pulford, Caisey V., Perez-Sepulveda, Blanca M., Canals, Rocío, Bevington, Jessica A., Bengtsson, Rebecca J., Wenner, Nicolas, Rodwell, Ella V., Kumwenda, Benjamin, Zhu, Xiaojun, Bennett, Rebecca J., Stenhouse, George E., De Silva, P. Malaka, Webster, Hermione J., Bengoechea, Jose A., Dumigan, Amy, Tran-Dien, Alicia, Prakash, Reenesh, Banda, Happy C., Alufandika, Lovemore, Mautanga, Mike P., Bowers-Barnard, Arthur, Beliavskaia, Alexandra Y., Predeus, Alexander V., Rowe, Will P.M., Darby, Alistair C., Hall, Neil, Weill, François-Xavier, Gordon, Melita A., Feasey, Nicholas A., Baker, Kate S. and Hinton, Jay C. D. (2021) Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa. Nature Microbiology, 6 (3). pp. 327-338. ISSN 2058-5276

van Oosterhout, Cock, Hall, Neil, Ly, Hinh and Tyler, Kevin (2021) COVID-19 evolution during the pandemic - Implications of new SARS-CoV-2 variants on disease control and public health policies. Virulence, 12 (1). pp. 507-508. ISSN 2150-5594

Frau, Alessandra, Ijaz, Umer Z., Slater, Rachael, Jonkers, Daisy, Penders, John, Campbell, Barry J., Kenny, John G., Hall, Neil, Lenzi, Luca, Burkitt, Michael D., Pierik, Marieke, Darby, Alistair C. and Probert, Christopher S. J. (2021) Inter-kingdom relationships in Crohn’s disease explored using a multi-omics approach. Gut Microbes, 13 (1). ISSN 1949-0976

Tassinari, Eleonora, Bawn, Matt, Thilliez, Gaetan, Charity, Oliver, Acton, Luke, Kirkwood, Mark, Petrovska, Liljana, Dallman, Timothy, Burgess, Catherine M., Hall, Neil, Duffy, Geraldine and Kingsley, Robert A (2020) Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone. Microbial Genomics, 6 (11). ISSN 2057-5858

Salloum, Tamara, Moussa, Rim, Rahy, Ryan, Al Deek, Jospin, Khalifeh, Ibrahim, El Hajj, Rana, Hall, Neil, Hirt, Robert P. and Tokajian, Sima (2020) Expanded genome-wide comparisons give novel insights into population structure and genetic heterogeneity of Leishmania tropica complex. PLoS Neglected Tropical Diseases, 14 (9). ISSN 1935-2727

Bawn, Matt, Alikhan, Nabil-Fareed, Thilliez, Gaëtan, Kirkwood, Mark, Wheeler, Nicole E., Petrovska, Liljana, Dallman, Timothy J., Adriaenssens, Evelien M., Hall, Neil and Kingsley, Robert A. (2020) Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation. PLoS Genetics, 16 (6). ISSN 1553-7390

Haldenby, Sam, Bronowski, Christina, Nelson, Charlotte, Kenny, John, Martinez-Rodriguez, Carmen, Chaudhuri, Roy, Williams, Nicola J, Forbes, Ken, Strachan, Norval J, Pulman, Jane, Winstanley, Ian N, Corless, Caroline E, Humphrey, Tom J, Bolton, Frederick J, O'Brien, Sarah J, Hall, Neil, Hertz-Fowler, Christiane and Winstanley, Craig (2020) Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLoS One, 15 (1). ISSN 1932-6203

Lloyd, Katie A., Parsons, Bryony N., Burkitt, Michael D., Moore, Andrew R., Papoutsopoulou, Stamatia, Boyce, Malcolm, Duckworth, Carrie A., Exarchou, Klaire, Howes, Nathan, Rainbow, Lucille, Fang, Yongxiang, Oxvig, Claus, Dodd, Steven, Varro, Andrea, Hall, Neil and Pritchard, D. Mark (2020) Netazepide inhibits expression of Pappalysin 2 in type-1 gastric neuroendocrine tumors. Cellular and Molecular Gastroenterology and Hepatology, 10 (1). pp. 113-132. ISSN 2352-345X

Richards, Thomas A., Massana, Ramon, Pagliara, Stefano and Hall, Neil (2019) Single cell ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1786). ISSN 0962-8436

Pulford, Caisey V., Wenner, Nicolas, Redway, Martha L., Rodwell, Ella V., Webster, Hermione J., Escudero, Roberta, Kröger, Carsten, Canals, Rocío, Rowe, Will, Lopez, Javier, Hall, Neil, Rowley, Paul D., Timofte, Dorina, Harrison, Robert A., Baker, Kate S. and Hinton, Jay C.D. (2019) The diversity, evolution and ecology of Salmonella in venomous snakes. PLoS Neglected Tropical Diseases, 13 (6). ISSN 1935-2727

Gardiner, Laura Jayne, Wingen, Luzie U., Bailey, Paul, Joynson, Ryan, Brabbs, Thomas, Wright, Jonathan, Higgins, James D., Hall, Neil, Griffiths, Simon, Clavijo, Bernardo J. and Hall, Anthony (2019) Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency. Genome Biology, 20 (1). ISSN 1474-760X

Wilson, Ian W., Weedall, Gareth D., Lorenzi, Hernan, Howcroft, Timothy, Hon, Chung-Chau, Deloger, Marc, Guillén, Nancy, Paterson, Steve, Clark, C. Graham and Hall, Neil (2019) Genetic diversity and gene family expansions in members of the genus Entamoeba. Genome Biology and Evolution, 11 (3). 688–705. ISSN 1759-6653

Gardiner, Laura-Jayne, Joynson, Ryan, Omony, Jimmy, Rusholme-Pilcher, Rachel, Olohan, Lisa, Lang, Daniel, Bai, Caihong, Hawkesford, Malcolm, Salt, David, Spannagl, Manuel, Mayer, Klaus F.X., Kenny, John, Bevan, Michael, Hall, Neil and Hall, Anthony (2018) Hidden variation in polyploid wheat drives local adaptation. Genome Research, 28 (9). pp. 1319-1332. ISSN 1088-9051

McMullan, Mark, Rafiqi, Maryam, Kaithakottil, Gemy, Clavijo, Bernardo J., Bilham, Lorelei, Orton, Elizabeth, Percival-Alwyn, Lawrence, Ward, Ben J., Edwards, Anne, Saunders, Diane G.O., Garcia Accinelli, Gonzalo, Wright, Jonathan, Verweij, Walter, Koutsovoulos, Georgios, Yoshida, Kentaro, Hosoya, Tsuyoshi, Williamson, Louisa, Jennings, Philip, Ioos, Renaud, Husson, Claude, Hietala, Ari M., Vivian-Smith, Adam, Solheim, Halvor, MaCclean, Dan, Fosker, Christine, Hall, Neil, Brown, James K. M., Swarbreck, David, Blaxter, Mark, Downie, J. Allan and Clark, Matthew D. (2018) The ash dieback invasion of Europe was founded by two genetically divergent individuals. Nature Ecology and Evolution, 2 (6). pp. 1000-1008. ISSN 2397-334X

Olohan, Lisa, Gardiner, Laura-Jayne, Lucaci, Anita, Steuernagel, Burkhard, Wulff, Brande, Kenny, John, Hall, Neil and Hall, Anthony (2018) A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample. BMC Genomics, 19. ISSN 1471-2164

Gaither, Michelle R., Gkafas, Georgios A., de Jong, Menno, Sarigol, Fatih, Neat, Francis, Regnier, Thomas, Moore, Daniel, Gröcke, Darren R., Hall, Neil, Liu, Xuan, Kenny, John, Lucaci, Anita, Hughes, Margaret, Haldenby, Sam and Hoelzel, A. Rus (2018) Genomics of habitat choice and adaptive evolution in a deep-sea fish. Nature Ecology and Evolution, 2 (4). pp. 680-687. ISSN 2397-334X

Leonard, Guy, Labarre, Aurélie, Milner, David S., Monier, Adam, Soanes, Darren M., Wideman, Jeremy G., Maguire, Finlay, Stevens, Sam, Sain, Divya, Grau-Bové, Xavier, Sebé-Pedrós, Arnau, Stajich, Jason E., Paszkiewicz, Konrad, Brown, Matthew W., Hall, Neil, Wickstead, Bill and Richards, Thomas A. (2018) Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides. Open Biology, 8 (1).

Zhou, Ji, Tardieu, Francois, Pridmore, Tony, Doonan, John, Reynolds, Daniel, Hall, Neil, Griffiths, Simon, Cheng, Tao, Zhu, Yan, Wang, Xiuyi, Jiang, Dong and Ding, Yanfeng (2018) Plant phenomics: history, present status and challenges. Journal of Nanjing Agricultural University, 41 (4). pp. 580-588.

Parsons, Bryony N., Ijaz, Umer Z., D’Amore, Rosalinda, Burkitt, Michael D., Eccles, Richard, Lenzi, Luca, Duckworth, Carrie A., Moore, Andrew R., Tiszlavicz, Laszlo, Varro, Andrea, Hall, Neil and Pritchard, D. Mark (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13 (11). ISSN 1553-7374

Gardiner, Laura-Jayne, Bansept-Basler, Pauline, Olohan, Lisa, Joynson, Ryan, Brenchley, Rachel, Hall, Neil, O'Sullivan, Donal M. and Hall, Anthony (2016) Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat. The Plant Journal, 87 (4). pp. 403-419. ISSN 0960-7412

van’t Hof, Arjen E., Campagne, Pascal, Rigden, Daniel J., Yung, Carl J., Lingley, Jessica, Quail, Michael A., Hall, Neil, Darby, Alistair C. and Saccheri, Ilik J. (2016) The industrial melanism mutation in British peppered moths is a transposable element. Nature, 534 (7605). pp. 102-105. ISSN 0028-0836

Schirmer, Melanie, D'Amore, Rosalinda, Ijaz, Umer Z., Hall, Neil and Quince, Christopher (2016) Illumina error profiles:Resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17 (1). ISSN 1471-2105

D'Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). ISSN 1471-2164

Gardiner, Laura-Jayne, Quinton-Tulloch, Mark, Olohan, Lisa, Price, Jonathan, Hall, Neil and Hall, Anthony (2015) A genome-wide survey of DNA methylation in hexaploid wheat. Genome Biology, 16. ISSN 1474-760X

Moore, Andrew R., Parsons, Bryony N., Boyce, Malcolm J., Rainbow, Lucille, Fang, Yongxiang, Varro, Andrea, Hall, Neil and Pritchard, D. M. (2015) Sa1824 Identification of Potential Biomarkers of Netazepide (YF476) Treatment of Type I Gastric Neuroendocrine Tumours. Gastroenterology, 148 (4). S-342. ISSN 0016-5085

Schirmer, Melanie, Ijaz, Umer Z., D'Amore, Rosalinda, Hall, Neil, Sloan, William T. and Quince, Christopher (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43 (6). ISSN 0305-1048

Gardiner, Laura‐jayne, Gawroński, Piotr, Olohan, Lisa, Schnurbusch, Thorsten, Hall, Neil and Hall, Anthony (2014) Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species. The Plant Journal, 80 (5). pp. 895-904. ISSN 0960-7412

Quince, Christopher, Lanzén, Anders, Curtis, Thomas P., Davenport, Russell J., Hall, Neil, Head, Ian M., Read, L. Fiona and Sloan, William T. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nature Methods, 6 (9). pp. 639-641. ISSN 1548-7091