Items where Author is "Hall, Neil"

Stenhouse, George E., Keddy, Karen H., Bengtsson, Rebecca J., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Smith, Anthony M., Thomas, Juno, Iturriza-Gómara, Miren and Baker, Kate S. (2023) The genomic epidemiology of shigellosis in South Africa. Nature Communications, 14. ISSN 2041-1723

McGowan, Jamie, Kilias, Estelle S., Alacid, Elisabet, Lipscombe, James, Jenkins, Benjamin H., Gharbi, Karim, Kaithakottil, Gemy G., Macaulay, Iain C., McTaggart, Seanna, Warring, Sally D., Richards, Thomas A., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Swarbreck, David (2023) Identification of a non-canonical ciliate nuclear genetic code where UAA and UAG code for different amino acids. PLoS Genetics, 19 (10). ISSN 1553-7390

Bailey, Nicholas P., Shao, Yuxin, Du, Shaodua, Foster, Peter G., Fettweis, Jennifer, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Wang, Zheng and Hirt, Robert P. (2023) Evolutionary conservation of Trichomonas-mycoplasma symbiosis across the host species barrier. Frontiers in Microbiology, 14. ISSN 1664-302X

Ebenezer, Thankgod Echezona, Low, Ross S., O'Neill, Ellis Charles, Huang, Ishuo, DeSimone, Antonio, Farrow, Scott C., Field, Robert A. ORCID: https://orcid.org/0000-0001-8574-0275, Ginger, Michael L., Guerrero, Sergio Adrián, Hammond, Michael, Hampl, Vladimír, Horst, Geoff, Ishikawa, Takahiro, Karnkowska, Anna, Linton, Eric W., Myler, Peter, Nakazawa, Masami, Cardol, Pierre, Sánchez-Thomas, Rosina, Saville, Barry J., Shah, Mahfuzur R., Simpson, Alastair G. B., Sur, Aakash, Suzuki, Kengo, Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158, Zimba, Paul V., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Field, Mark C. (2022) Euglena International Network (EIN): Driving euglenoid biotechnology for the benefit of a challenged world. Biology Open, 11 (11). ISSN 2046-6390

Bawn, Matt, Hernandez, Johana, Trampari, Eleftheria, Thilliez, Gaetan, Quince, Christopher, Webber, Mark A., Kingsley, Robert A. ORCID: https://orcid.org/0000-0002-0194-6485, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Macaulay, Iain C. (2022) Single-cell genomics reveals population structures from in vitro evolutionary studies of Salmonella. Microbial Genomics, 8 (9). ISSN 2057-5858

Gul, Lejla, Korcsmaros, Tamas and Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 (2022) Flaviviruses hijack the host microbiota to facilitate their transmission. Cell, 185 (14). pp. 2395-2397. ISSN 0092-8674

Bengtsson, Rebecca J., Simpkin, Adam J., Pulford, Caisey V., Low, Ross, Rasko, David A., Rigden, Daniel J., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Barry, Eileen M., Tennant, Sharon M. and Baker, Kate S. (2022) Pathogenomic analyses of Shigella isolates inform factors limiting shigellosis prevention and control across LMICs. Nature Microbiology, 7 (2). pp. 251-261. ISSN 2058-5276

Blaxter, Mark, Archibald, John M., Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Di Palma, Federica, Durbin, Richard, Edwards, Scott V., Graves, Jennifer A.M., Hackett, Kevin J., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Jarvis, Erich D., Johnson, Rebecca N., Karlsson, Elinor K., Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K.N., Lindblad-Toh, Kerstin, Lopez, Jose V., Moran, Nancy A., Robinson, Gene E., Ryder, Oliver A., Shapiro, Beth, Soltis, Pamela S., Warnow, Tandy, Zhang, Guojie and Lewin, Harris A. (2022) Why sequence all eukaryotes? Proceedings of the National Academy of Sciences of the United States of America, 119 (4). ISSN 0027-8424

Lawniczak, Mara K. N., Durbin, Richard, Flicek, Paul, Lindblad-Toh, Kerstin, Wei, Xiaofeng, Archibald, John M., Baker, William J., Belov, Katherine, Blaxter, Mark L., Bonet, Tomas Marques, Childers, Anna K., Coddington, Jonathan A., Crandall, Keith A., Crawford, Andrew J., Davey, Robert P., Palma, Federica Di, Fang, Qi, Haerty, Wilfried ORCID: https://orcid.org/0000-0003-0111-191X, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Hoff, Katharina J., Howe, Kerstin, Jarvis, Erich D., Johnson, Warren E., Johnson, Rebecca N., Kersey, Paul J., Liu, Xin, Lopez, Jose Victor, Myers, Eugene W., Pettersson, Olga Vinnere, Phillippy, Adam M., Poelchau, Monica F., Pruitt, Kim D., Rhie, Arang, Castilla-Rubio, Juan Carlos, Sahu, Sunil Kumar, Salmon, Nicholas A., Soltis, Pamela S., Swarbreck, David, Thibaud-Nissen, Françoise, Wang, Sibo, Wegrzyn, Jill L., Zhang, Guojie, Zhang, He, Lewin, Harris A. and Richards, Stephen (2022) Standards recommendations for the Earth BioGenome Project. Proceedings of the National Academy of Sciences of the United States of America, 119 (4). ISSN 0027-8424

Lewin, Harris A., Richards, Stephen, Aiden, Erez Lieberman, Allende, Miguel L., Archibald, John M., Bálint, Miklós, Barker, Katharine B., Baumgartner, Bridget, Belov, Katherine, Bertorelle, Giorgio, Blaxter, Mark L., Cai, Jing, Caperello, Nicolette D., Carlson, Keith, Castilla-Rubio, Juan Carlos, Chaw, Shu Miaw, Chen, Lei, Childers, Anna K., Coddington, Jonathan A., Conde, Dalia A., Corominas, Montserrat, Crandall, Keith A., Crawford, Andrew J., DiPalma, Federica, Durbin, Richard, Ebenezer, Thank God E., Edwards, Scott V., Fedrigo, Olivier, Flicek, Paul, Formenti, Giulio, Gibbs, Richard A., Gilbert, M. Thomas, Goldstein, Melissa M., Graves, Jennifer Marshall, Greely, Henry T., Grigoriev, Igor V., Hackett, Kevin J., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Haussler, David, Helgen, Kristofer M., Hogg, Carolyn J., Isobe, Sachiko, Jakobsen, Kjetill Sigurd, Janke, Axel, Jarvis, Erich D., Johnson, Warren E., Jones, Steven J.M., Karlsson, Elinor K., Kersey, Paul J., Kim, Jin Hyoung, Kress, W. John, Kuraku, Shigehiro, Lawniczak, Mara K.N., Leebens-Mack, James H., Li, Xueyan, Lindblad-Toh, Kerstin, Lopez, Jose V., Marques-Bonet, Tomas, Liu, Xin, Mazard, Sophie, Mazet, Jonna A.K., Mazzoni, Camila J., Myers, Eugene W., O’Neill, Rachel J., Paez, Sadye, Park, Hyun, Robinson, Gene E., Roquet, Cristina, Ryder, Oliver A., Sabir, Jamal S.M., Shaffer, H. Bradley, Shank, Timothy M., Sherkow, Jacob S., Soltis, Pamela S., Tang, Boping, Tedersoo, Leho, Uliano-Silva, Marcela, Wang, Kun, Wei, Xiaofeng, Wetzer, Regina, Wilson, Julia L., Xu, Xun, Yang, Huanming, Yoder, Anne D. and Zhang, Guojie (2022) The Earth BioGenome Project 2020: Starting the clock. Proceedings of the National Academy of Sciences of the United States of America, 119 (4). ISSN 0027-8424

Gerasimov, Evgeny S., Afonin, Dmitry A., Korzhavina, Oksana A., Lukeš, Julius, Low, Ross, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Tyler, Kevin ORCID: https://orcid.org/0000-0002-0647-8158, Yurchenko, Vyacheslav and Zimmer, Sara L. (2022) Mitochondrial RNA editing in Trypanoplasma borreli: new tools, new revelations. Computational and Structural Biotechnology Journal, 20. pp. 6388-6402. ISSN 2001-0370

Perez-Sepulveda, Blanca M., Heavens, Darren, Pulford, Caisey V., Predeus, Alexander V., Low, Ross, Dykes, Gregory F., Schudoma, Christian, Rowe, Will, Lipscombe, James, Watkins, Chris, Shearer, Neil, Costigan, Karl, Baker, Kate S., Feasey, Nicholas A., Hinton, Jay C. D. and Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and The 10KSG consortium (2021) An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes. Genome Biology, 22 (1). ISSN 1474-760X

Sabir, Mumdooh J., Low, Ross, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Kamli, Majid Rasool and Malik, Md. Zubbair (2021) A bioinformatics approach to identifying potential biomarkers for Cryptosporidium parvum: A coccidian parasite associated with fetal diarrhea. Vaccines, 9 (12). ISSN 2076-393X

Berger Gillam, Tara, Chin, Jeannette ORCID: https://orcid.org/0000-0002-9398-5579, Cossey, Sarah, Culley, Kirsty, Davidson, Rosemary ORCID: https://orcid.org/0000-0002-6624-4011, Edwards, Dylan ORCID: https://orcid.org/0000-0002-3292-2064, Gharbi, Karim, Goodwin, Nick, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Hitchcock, Mark, Jupp, Orla, Lipscombe, James, Parr, Gerard ORCID: https://orcid.org/0000-0002-9365-9132, Shearer, Neil, Smith, Russell and Steel, Nicholas ORCID: https://orcid.org/0000-0003-1528-140X (2021) Phase 2 of the Norwich COVID-19 testing initiative: An evaluation. Journal of Public Health, 43 (4). e749–e750. ISSN 1741-3842

Kasumba, Irene N., Pulford, Caisey V., Perez Sepulveda, Blanca M., Sen, Sunil, Sayed, Nurulla, Permala-Booth, Jasnehta, Livio, Sofie, Heavens, Darren, Low, Ross, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Roose, Anna, Powell, Helen, Farag, Tamer, Panchalingham, Sandra, Berkeley, Lynette, Nasrin, Dilruba, Blackwelder, William C., Wu, Yukun, Tamboura, Boubou, Sanogo, Doh, Onwuchekwa, Uma, Sow, Samba O., Ochieng, John B., Omore, Richard, Oundo, Joseph O., Breiman, Robert F., Mintz, Eric D., O'Reilly, Ciara E., Antonio, Martin, Saha, Debasish, Hossain, M. Jahangir, Mandomando, Inacio, Bassat, Quique, Alonso, Pedro L., Ramamurthy, T., Sur, Dipika, Qureshi, Shahida, Zaidi, Anita K. M., Hossain, Anowar, Faruque, Abu S. G., Nataro, James P., Kotloff, Karen L., Levine, Myron M., Hinton, Jay C. D. and Tennant, Sharon M. (2021) Characteristics of Salmonella recovered from stools of children enrolled in the Global Enteric Multicenter Study. Clinical Infectious Diseases, 73 (4). pp. 631-641. ISSN 1058-4838

Van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Stephenson, Jessica F., Weimer, Bart, Ly, Hinh, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Tyler, Kevin M. ORCID: https://orcid.org/0000-0002-0647-8158 (2021) COVID-19 adaptive evolution during the pandemic – Implications of new SARS-CoV-2 variants on public health policies. Virulence, 12 (1). pp. 2013-2016. ISSN 2150-5594

Žárský, Vojtěch, Klimeš, Vladimír, Pačes, Jan, Vlček, Čestmír, Hradilová, Miluše, Beneš, Vladimír, Nývltová, Eva, Hrdý, Ivan, Pyrih, Jan, Mach, Jan, Barlow, Lael, Stairs, Courtney W., Eme, Laura, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Eliáš, Marek, Dacks, Joel B., Roger, Andrew and Tachezy, Jan (2021) The Mastigamoeba balamuthi genome and the nature of the free-living ancestor of Entamoeba. Molecular Biology and Evolution, 38 (6). 2240–2259. ISSN 0737-4038

Li, Yan, Leveau, Aymeric, Zhao, Qiang, Feng, Qi, Lu, Hengyun, Miao, Jiashun, Xue, Zheyong, Martin, Azahara C., Wegel, Eva, Wang, Jing, Orme, Anastasia, Rey, Maria Dolores, Karafiátová, Miroslava, Vrána, Jan, Steuernagel, Burkhard, Joynson, Ryan, Owen, Charlotte, Reed, James, Louveau, Thomas, Stephenson, Michael J. ORCID: https://orcid.org/0000-0002-2594-1806, Zhang, Lei, Huang, Xuehui, Huang, Tao, Fan, Danling, Zhou, Congcong, Tian, Qilin, Li, Wenjun, Lu, Yiqi, Chen, Jiaying, Zhao, Yan, Lu, Ying, Zhu, Chuanrang, Liu, Zhenhua, Polturak, Guy, Casson, Rebecca, Hill, Lionel, Moore, Graham, Melton, Rachel, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Wulff, Brande B. H., Doležel, Jaroslav, Langdon, Tim, Han, Bin and Osbourn, Anne (2021) Subtelomeric assembly of a multi-gene pathway for antimicrobial defense compounds in cereals. Nature Communications, 12. ISSN 2041-1723

Kirkwood, Mark, Vohra, Prerna, Bawn, Matt, Thilliez, Gaëtan, Pye, Hannah, Tanner, Jennifer, Chintoan-Uta, Cosmin, Branchu, Priscilla, Petrovska, Liljana, Dallman, Timothy, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Stevens, Mark P. and Kingsley, Robert A. (2021) Ecological niche adaptation of Salmonella Typhimurium U288 is associated with altered pathogenicity and reduced zoonotic potential. Communications Biology, 4 (1). ISSN 2399-3642

Gilroy, Rachel, Ravi, Anuradha, Getino, Maria, Pursley, Isabella, Horton, Daniel L., Alikhan, Nabil-Fareed, Baker, Dave, Gharbi, Karim, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Watson, Mick, Adriaenssens, Evelien M., Foster-Nyarko, Ebenezer, Jarju, Sheikh, Secka, Arss, Antonio, Martin, Oren, Aharon, Chaudhuri, Roy R., La Ragione, Roberto, Hildebrand, Falk and Pallen, Mark J. ORCID: https://orcid.org/0000-0003-1807-3657 (2021) Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. PeerJ, 9. ISSN 2167-8359

Staton, Gareth J., Clegg, Simon R., Ainsworth, Stuart, Armstrong, Stuart, Carter, Stuart D., Radford, Alan D., Darby, Alistair, Wastling, Jonathan, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Evans, Nicholas J. (2021) Dissecting the molecular diversity and commonality of bovine and human treponemes identifies key survival and adhesion mechanisms. PLoS Pathogens, 17 (3). ISSN 1553-7374

König, Constantin, Honecker, Barbara, Wilson, Ian W., Weedall, Gareth D., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Roeder, Thomas, Metwally, Nahla Galal and Bruchhaus, Iris (2021) Taxon-specific proteins of the pathogenic entamoeba species E. histolytica and E. nuttalli. Frontiers in Cellular and Infection Microbiology, 11. ISSN 2235-2988

Gillam, T. Berger, Cole, J., Gharbi, K., Angiolini, E., Barker, T., Bickerton, P., Brabbs, T., Chin, J. ORCID: https://orcid.org/0000-0002-9398-5579, Coen, E., Cossey, S., Davey, R., Davidson, R. ORCID: https://orcid.org/0000-0002-6624-4011, Durrant, A., Edwards, D. ORCID: https://orcid.org/0000-0002-3292-2064, Hall, N. ORCID: https://orcid.org/0000-0003-2808-0009, Henderson, S., Hitchcock, M., Irish, N., Lipscombe, J., Jones, G., Parr, G. ORCID: https://orcid.org/0000-0002-9365-9132, Rushworth, S., Shearer, N., Smith, R. and Steel, N. ORCID: https://orcid.org/0000-0003-1528-140X (2021) Norwich COVID-19 testing initiative pilot: evaluating the feasibility of asymptomatic testing on a university campus. Journal of Public Health, 43 (1). pp. 82-88. ISSN 1741-3842

Hajrah, Nahid H., Rabah, Samar O., Alghamdi, Mohammed K., Atef, Ahmed, Edris, Sherif, Alhebshi, Alawiah M., Hassan, Sabah M., Alzahrani, Dhafer A., Bahieldin, Ahmed, Mutwakil, Mohammed H. Z., Alqurashi, Yaser E., Al-Zahrani, Hassan S., Abo-Aba, Salah E. M., Jansen, Robert K., Sabir, Jamal S. M., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Kamli, Majid Rasool (2021) Transcriptional analysis of Rhazya stricta in response to jasmonic acid. Electronic Journal of Biotechnology, 50. pp. 68-76. ISSN 0717-3458

Pulford, Caisey V., Perez-Sepulveda, Blanca M., Canals, Rocío, Bevington, Jessica A., Bengtsson, Rebecca J., Wenner, Nicolas, Rodwell, Ella V., Kumwenda, Benjamin, Zhu, Xiaojun, Bennett, Rebecca J., Stenhouse, George E., De Silva, P. Malaka, Webster, Hermione J., Bengoechea, Jose A., Dumigan, Amy, Tran-Dien, Alicia, Prakash, Reenesh, Banda, Happy C., Alufandika, Lovemore, Mautanga, Mike P., Bowers-Barnard, Arthur, Beliavskaia, Alexandra Y., Predeus, Alexander V., Rowe, Will P.M., Darby, Alistair C., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Weill, François-Xavier, Gordon, Melita A., Feasey, Nicholas A., Baker, Kate S. and Hinton, Jay C. D. (2021) Stepwise evolution of Salmonella Typhimurium ST313 causing bloodstream infection in Africa. Nature Microbiology, 6 (3). pp. 327-338. ISSN 2058-5276

van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Ly, Hinh and Tyler, Kevin ORCID: https://orcid.org/0000-0002-0647-8158 (2021) COVID-19 evolution during the pandemic - Implications of new SARS-CoV-2 variants on disease control and public health policies. Virulence, 12 (1). pp. 507-508. ISSN 2150-5594

Frau, Alessandra, Ijaz, Umer Z., Slater, Rachael, Jonkers, Daisy, Penders, John, Campbell, Barry J., Kenny, John G., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Lenzi, Luca, Burkitt, Michael D., Pierik, Marieke, Darby, Alistair C. and Probert, Christopher S. J. (2021) Inter-kingdom relationships in Crohn’s disease explored using a multi-omics approach. Gut Microbes, 13 (1). ISSN 1949-0976

Tassinari, Eleonora, Bawn, Matt, Thilliez, Gaetan, Charity, Oliver, Acton, Luke, Kirkwood, Mark, Petrovska, Liljana, Dallman, Timothy, Burgess, Catherine M., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Duffy, Geraldine and Kingsley, Robert A (2020) Whole-genome epidemiology links phage-mediated acquisition of a virulence gene to the clonal expansion of a pandemic Salmonella enterica serovar Typhimurium clone. Microbial Genomics, 6 (11). ISSN 2057-5858

Salloum, Tamara, Moussa, Rim, Rahy, Ryan, Al Deek, Jospin, Khalifeh, Ibrahim, El Hajj, Rana, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Hirt, Robert P. and Tokajian, Sima (2020) Expanded genome-wide comparisons give novel insights into population structure and genetic heterogeneity of Leishmania tropica complex. PLoS Neglected Tropical Diseases, 14 (9). ISSN 1935-2727

Bawn, Matt, Alikhan, Nabil-Fareed, Thilliez, Gaëtan, Kirkwood, Mark, Wheeler, Nicole E., Petrovska, Liljana, Dallman, Timothy J., Adriaenssens, Evelien M., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Kingsley, Robert A. ORCID: https://orcid.org/0000-0002-0194-6485 (2020) Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation. PLoS Genetics, 16 (6). ISSN 1553-7390

Haldenby, Sam, Bronowski, Christina, Nelson, Charlotte, Kenny, John, Martinez-Rodriguez, Carmen, Chaudhuri, Roy, Williams, Nicola J, Forbes, Ken, Strachan, Norval J, Pulman, Jane, Winstanley, Ian N, Corless, Caroline E, Humphrey, Tom J, Bolton, Frederick J, O'Brien, Sarah J, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Hertz-Fowler, Christiane and Winstanley, Craig (2020) Increasing prevalence of a fluoroquinolone resistance mutation amongst Campylobacter jejuni isolates from four human infectious intestinal disease studies in the United Kingdom. PLoS One, 15 (1). ISSN 1932-6203

Lloyd, Katie A., Parsons, Bryony N., Burkitt, Michael D., Moore, Andrew R., Papoutsopoulou, Stamatia, Boyce, Malcolm, Duckworth, Carrie A., Exarchou, Klaire, Howes, Nathan, Rainbow, Lucille, Fang, Yongxiang, Oxvig, Claus, Dodd, Steven, Varro, Andrea, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Pritchard, D. Mark (2020) Netazepide inhibits expression of Pappalysin 2 in type-1 gastric neuroendocrine tumors. Cellular and Molecular Gastroenterology and Hepatology, 10 (1). pp. 113-132. ISSN 2352-345X

Richards, Thomas A., Massana, Ramon, Pagliara, Stefano and Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 (2019) Single cell ecology. Philosophical Transactions of the Royal Society B: Biological Sciences, 374 (1786). ISSN 0962-8436

Pulford, Caisey V., Wenner, Nicolas, Redway, Martha L., Rodwell, Ella V., Webster, Hermione J., Escudero, Roberta, Kröger, Carsten, Canals, Rocío, Rowe, Will, Lopez, Javier, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Rowley, Paul D., Timofte, Dorina, Harrison, Robert A., Baker, Kate S. and Hinton, Jay C.D. (2019) The diversity, evolution and ecology of Salmonella in venomous snakes. PLoS Neglected Tropical Diseases, 13 (6). ISSN 1935-2727

Gardiner, Laura Jayne, Wingen, Luzie U., Bailey, Paul, Joynson, Ryan, Brabbs, Thomas, Wright, Jonathan, Higgins, James D., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Griffiths, Simon, Clavijo, Bernardo J. and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2019) Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency. Genome Biology, 20 (1). ISSN 1474-760X

Wilson, Ian W., Weedall, Gareth D., Lorenzi, Hernan, Howcroft, Timothy, Hon, Chung-Chau, Deloger, Marc, Guillén, Nancy, Paterson, Steve, Clark, C. Graham and Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 (2019) Genetic diversity and gene family expansions in members of the genus Entamoeba. Genome Biology and Evolution, 11 (3). 688–705. ISSN 1759-6653

Gardiner, Laura-Jayne, Joynson, Ryan, Omony, Jimmy, Rusholme-Pilcher, Rachel, Olohan, Lisa, Lang, Daniel, Bai, Caihong, Hawkesford, Malcolm, Salt, David, Spannagl, Manuel, Mayer, Klaus F.X., Kenny, John, Bevan, Michael, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2018) Hidden variation in polyploid wheat drives local adaptation. Genome Research, 28 (9). pp. 1319-1332. ISSN 1088-9051

McMullan, Mark, Rafiqi, Maryam, Kaithakottil, Gemy, Clavijo, Bernardo J., Bilham, Lorelei, Orton, Elizabeth, Percival-Alwyn, Lawrence, Ward, Ben J., Edwards, Anne, Saunders, Diane G.O., Garcia Accinelli, Gonzalo, Wright, Jonathan, Verweij, Walter, Koutsovoulos, Georgios, Yoshida, Kentaro, Hosoya, Tsuyoshi, Williamson, Louisa, Jennings, Philip, Ioos, Renaud, Husson, Claude, Hietala, Ari M., Vivian-Smith, Adam, Solheim, Halvor, MaCclean, Dan, Fosker, Christine, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Brown, James K. M., Swarbreck, David, Blaxter, Mark, Downie, J. Allan and Clark, Matthew D. (2018) The ash dieback invasion of Europe was founded by two genetically divergent individuals. Nature Ecology and Evolution, 2 (6). pp. 1000-1008. ISSN 2397-334X

Olohan, Lisa, Gardiner, Laura-Jayne, Lucaci, Anita, Steuernagel, Burkhard, Wulff, Brande, Kenny, John, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2018) A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample. BMC Genomics, 19. ISSN 1471-2164

Gaither, Michelle R., Gkafas, Georgios A., de Jong, Menno, Sarigol, Fatih, Neat, Francis, Regnier, Thomas, Moore, Daniel, Gröcke, Darren R., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Liu, Xuan, Kenny, John, Lucaci, Anita, Hughes, Margaret, Haldenby, Sam and Hoelzel, A. Rus (2018) Genomics of habitat choice and adaptive evolution in a deep-sea fish. Nature Ecology and Evolution, 2 (4). pp. 680-687. ISSN 2397-334X

Leonard, Guy, Labarre, Aurélie, Milner, David S., Monier, Adam, Soanes, Darren M., Wideman, Jeremy G., Maguire, Finlay, Stevens, Sam, Sain, Divya, Grau-Bové, Xavier, Sebé-Pedrós, Arnau, Stajich, Jason E., Paszkiewicz, Konrad, Brown, Matthew W., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Wickstead, Bill and Richards, Thomas A. (2018) Comparative genomic analysis of the ‘pseudofungus’ Hyphochytrium catenoides. Open Biology, 8 (1).

Zhou, Ji, Tardieu, Francois, Pridmore, Tony, Doonan, John, Reynolds, Daniel, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Griffiths, Simon, Cheng, Tao, Zhu, Yan, Wang, Xiuyi, Jiang, Dong and Ding, Yanfeng (2018) Plant phenomics: history, present status and challenges. Journal of Nanjing Agricultural University, 41 (4). pp. 580-588.

Parsons, Bryony N., Ijaz, Umer Z., D’Amore, Rosalinda, Burkitt, Michael D., Eccles, Richard, Lenzi, Luca, Duckworth, Carrie A., Moore, Andrew R., Tiszlavicz, Laszlo, Varro, Andrea, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Pritchard, D. Mark (2017) Comparison of the human gastric microbiota in hypochlorhydric states arising as a result of Helicobacter pylori-induced atrophic gastritis, autoimmune atrophic gastritis and proton pump inhibitor use. PLoS Pathogens, 13 (11). ISSN 1553-7374

Gardiner, Laura-Jayne, Bansept-Basler, Pauline, Olohan, Lisa, Joynson, Ryan, Brenchley, Rachel, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, O'Sullivan, Donal M. and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2016) Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat. The Plant Journal, 87 (4). pp. 403-419. ISSN 0960-7412

van’t Hof, Arjen E., Campagne, Pascal, Rigden, Daniel J., Yung, Carl J., Lingley, Jessica, Quail, Michael A., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Darby, Alistair C. and Saccheri, Ilik J. (2016) The industrial melanism mutation in British peppered moths is a transposable element. Nature, 534 (7605). pp. 102-105. ISSN 0028-0836

Schirmer, Melanie, D'Amore, Rosalinda, Ijaz, Umer Z., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Quince, Christopher (2016) Illumina error profiles:Resolving fine-scale variation in metagenomic sequencing data. BMC Bioinformatics, 17 (1). ISSN 1471-2105

D'Amore, Rosalinda, Ijaz, Umer Zeeshan, Schirmer, Melanie, Kenny, John G., Gregory, Richard, Darby, Alistair C., Shakya, Migun, Podar, Mircea, Quince, Christopher and Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 (2016) A comprehensive benchmarking study of protocols and sequencing platforms for 16S rRNA community profiling. BMC Genomics, 17 (1). ISSN 1471-2164

Gardiner, Laura-Jayne, Quinton-Tulloch, Mark, Olohan, Lisa, Price, Jonathan, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2015) A genome-wide survey of DNA methylation in hexaploid wheat. Genome Biology, 16. ISSN 1474-760X

Moore, Andrew R., Parsons, Bryony N., Boyce, Malcolm J., Rainbow, Lucille, Fang, Yongxiang, Varro, Andrea, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Pritchard, D. M. (2015) Sa1824 Identification of Potential Biomarkers of Netazepide (YF476) Treatment of Type I Gastric Neuroendocrine Tumours. Gastroenterology, 148 (4). S-342. ISSN 0016-5085

Schirmer, Melanie, Ijaz, Umer Z., D'Amore, Rosalinda, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Sloan, William T. and Quince, Christopher (2015) Insight into biases and sequencing errors for amplicon sequencing with the Illumina MiSeq platform. Nucleic Acids Research, 43 (6). ISSN 0305-1048

Gardiner, Laura‐jayne, Gawroński, Piotr, Olohan, Lisa, Schnurbusch, Thorsten, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2014) Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species. The Plant Journal, 80 (5). pp. 895-904. ISSN 0960-7412

Quince, Christopher, Lanzén, Anders, Curtis, Thomas P., Davenport, Russell J., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Head, Ian M., Read, L. Fiona and Sloan, William T. (2009) Accurate determination of microbial diversity from 454 pyrosequencing data. Nature Methods, 6 (9). pp. 639-641. ISSN 1548-7091