Items where Research Group is "Plant Sciences

In Press

Kong, Xiangjin, Peng, Kuan, Shan, Youxia, Yun, Ze, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Duan, Xuewu, Jiang, Yueming, Qu, Hongxia and Zhu, Hong (2024) Transcriptional regulation of mir528-PPO module by mir156 targeted spls orchestrates chilling response in banana. Molecular Horticulture. ISSN 2730-9401 (In Press)

Published

Avissar-Whiting, Michele, Belliard, Frédérique, Bertozzi, Stefano M., Brand, Amy, Brown, Katherine, Clément-Stoneham, Géraldine, Dawson, Stephanie, Dey, Gautam, Ecer, Daniel, Edmunds, Scott C., Farley, Ashley, Fischer, Tara D., Franko, Maryrose, Fraser, James S., Funk, Kathryn, Ganier, Clarisse, Harrison, Melissa, Hatch, Anna, Hazlett, Haley, Hindle, Samantha, Hook, Daniel W., Hurst, Phil, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Kiley, Robert, Lacy, Michael M., LaFlamme, Marcel, Lawrence, Rebecca, Lemberger, Thomas, Leptin, Maria, Lumb, Elliott, MacCallum, Catriona J., Marcum, Christopher Steven, Marinello, Gabriele, Mendonça, Alex, Monaco, Sara, Neves, Kleber, Pattinson, Damian, Polka, Jessica K., Puebla, Iratxe, Rittman, Martyn, Royle, Stephen J., Saderi, Daniela, Sever, Richard, Shearer, Kathleen, Spiro, John E., Stern, Bodo, Taraborelli, Dario, Vale, Ron, Vasquez, Claudia G., Waltman, Ludo, Watt, Fiona M., Weinberg, Zara Y. and Williams, Mark (2024) Recommendations for accelerating open preprint peer review to improve the culture of science. PLoS Biology, 22 (2). ISSN 1544-9173

Barragan, Ana Cristina, Latorre, Sergio M., Malmgren, Angus, Harant, Adeline, Win, Joe, Sugihara, Yu, Burbano, Hernán A., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Langner, Thorsten (2024) Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages. Molecular Biology and Evolution, 41 (8). ISSN 0737-4038

Cabre, Lisa, Jing, Lun, Makechemu, Moffat, Heluin, Kylhan, Khamlichi, Sarah El, Leprince, Jérôme, Kiefer-Meyer, Marie Christine, Pluchon, Sylvain, Mollet, Jean Claude, Zipfel, Cyril and Nguema-Ona, Eric (2024) Additive and specific effects of elicitor treatments on the metabolic profile of Arabidopsis thaliana. Molecular Plant-Microbe Interactions, 37 (2). pp. 112-126. ISSN 0894-0282

Canham, James, Win, Joe and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and GetGenome Network (2024) GetGenome: Overcoming inequalities in access to genomics technology. PLoS Biology, 22 (8). ISSN 1544-9173

Carroll, Joseph J., Sprigg, Colleen, Chilvers, Graham, Delso, Ignacio ORCID: https://orcid.org/0000-0001-8355-2289, Barker, Megan, Cox, Filipa, Johnson, David and Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 (2024) LC-ICP-MS analysis of inositol phosphate isomers in soil offers improved sensitivity and fine‐scale mapping of inositol phosphate distribution. Methods in Ecology and Evolution, 15 (3). pp. 530-543. ISSN 2041-210X

Chia, Khong Sam, Kourelis, Jiorgos, Teulet, Albin, Vickers, Martin, Sakai, Toshiyuki, Walker, Joseph F., Schornack, Sebastian, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Carella, Philip (2024) The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. The Plant Cell, 36 (7). pp. 2491-2511. ISSN 1040-4651

Contreras, Mauricio P., Pai, Hsuan, Thompson, Rebecca, Marchal, Clemence, Claeys, Jules, Adachi, Hiroaki and Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 (2024) The nucleotide-binding domain of NRC-dependent disease resistance proteins is sufficient to activate downstream helper NLR oligomerization and immune signaling. New Phytologist, 243 (1). pp. 345-361. ISSN 0028-646X

César-Razquin, Adrián, Casacuberta, Josep, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Federici, Silvia, Jacchia, Sara, Kagkli, Dafni Maria, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816 and Papadopoulou, Nikoletta and European Food Safety Authority (EFSA) (2024) Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants. EFSA Journal, 22 (4). ISSN 1831-4732

De la Concepcion, Juan Carlos, Langner, Thorsten, Fujisaki, Koki, Yan, Xia, Were, Vincent, Ching Lam, Anson Ho, Saado, Indira, Brabham, Helen J., Win, Joe, Yoshida, Kentaro, Talbot, Nicholas J. ORCID: https://orcid.org/0000-0001-6434-7757, Terauchi, Ryohei, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Banfield, Mark J. (2024) Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae. PLoS Pathogens, 20 (6). ISSN 1553-7366

Dudey, Ashley P., Rigby, Jake M., Hughes, Gregory R., Stephenson, G. Richard ORCID: https://orcid.org/0000-0003-1487-9178, Storr, Thomas E., Chantry, Andrew and Hemmings, Andrew M. ORCID: https://orcid.org/0000-0003-3053-3134 (2024) Expanding the inhibitor space of the WWP1 and WWP2 HECT E3 ligases. Journal of Enzyme Inhibition and Medicinal Chemistry, 39 (1). ISSN 1475-6366

Gladieux, Pierre, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Fairhead, Sebastian, Jouet, Agathe, Ortiz, Diana, Ravel, Sebastien, Shrestha, Ram-Krishna, Frouin, Julien, He, Xiahong, Zhu, Youyong, Morel, Jean-Benoit, Huang, Huichuan, Kroj, Thomas and Jones, Jonathan D. G. (2024) Extensive immune receptor repertoire diversity in disease-resistant rice landraces. Current Biology, 34 (17). 3983-3995.e6. ISSN 0960-9822

Goto, Yukihisa, Maki, Noriko, Sklenar, Jan, Derbyshire, Paul, Menke, Frank L. H. ORCID: https://orcid.org/0000-0003-2490-4824, Zipfel, Cyril, Kadota, Yasuhiro and Shirasu, Ken (2024) The phagocytosis oxidase/Bem1p domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity. New Phytologist, 241 (4). pp. 1763-1779. ISSN 0028-646X

Herold, Laura, Choi, Sera, He, Sheng Yang and Zipfel, Cyril (2024) The conserved AvrE family of bacterial effectors: Functions and targets during pathogenesis. Trends in Microbiology. ISSN 0966-842X

Jones, Jonathan D. G., Staskawicz, Brian J. and Dangl, Jeffery L. (2024) The plant immune system: From discovery to deployment. Cell, 187 (9). pp. 2095-2116. ISSN 0092-8674

Kaufmann, Moritz, Li, Leilei, Van Poucke, Christof, Rhyner, Nicola, De Tender, Caroline, Uyttendaele, Mieke, Heyndrickx, Marc, Zipfel, Cyril, Pothier, Joël F. and Cottyn, Bart (2024) Soil type and associated microbiome influence chitin's growth promotion effect in lettuce. Phytobiomes Journal, 8 (3). pp. 248-261. ISSN 2471-2906

Kim, Dae Sung, Li, Yufei, Ahn, Hee-Kyung ORCID: https://orcid.org/0000-0002-8884-0156, Woods-Tör, Alison, Cevik, Volkan, Furzer, Oliver J., Ma, Wenbo, Tör, Mahmut and Jones, Jonathan D. G. (2024) ATR2Cala2 from Arabidopsis-infecting downy mildew requires 4 TIR-NLR immune receptors for full recognition. New Phytologist, 243 (1). pp. 330-344. ISSN 0028-646X

Kim, Seyun, Bhandari, Rashna, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 and Saiardi, Adolfo (2024) The inositol phosphate signalling network in physiology and disease. Trends in Biochemical Sciences, 49 (11). pp. 969-985. ISSN 0968-0004

Kourelis, Jiorgos, Schuster, Mariana, Demir, Fatih, Mattinson, Oliver, Krauter, Sonja, Kahlon, Parvinderdeep S., O’Grady, Ruby, Royston, Samantha, Bravo-Cazar, Ana Lucía, Mooney, Brian C., Huesgen, Pitter F., Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and van der Hoorn, Renier A. L. (2024) Bioengineering secreted proteases converts divergent Rcr3 orthologs and paralogs into extracellular immune co-receptors. Plant Cell, 36 (9). pp. 3260-3276. ISSN 1040-4651

Liu, Chen, Hatzianestis, Ioannis H., Pfirrmann, Thorsten, Reza, Salim H., Minina, Elena A., Moazzami, Ali, Stael, Simon, Gutierrez–Beltran, Emilio, Pitsili, Eugenia, Dörmann, Peter, D’Andrea, Sabine, Gevaert, Kris, Romero–Campero, Francisco, Ding, Pingtao, Nowack, Moritz K., Van Breusegem, Frank, Jones, Jonathan D. G., Bozhkov, Peter V. and Moschou, Panagiotis N. (2024) Seed longevity is controlled by metacaspases. Nature Communications, 15 (1). ISSN 2041-1723

Madsen, Claus Krogh, Brearley, Charles Alistair ORCID: https://orcid.org/0000-0001-6179-9109, Harholt, Jesper and Brinch-Pedersen, Henrik A. (2024) Optimized barley phytase gene expression by focused FIND-IT screening for mutations in cis-acting regulatory elements. Frontiers in Plant Science, 15. ISSN 1664-462X

Moreira, Carlos J. S., Escórcio, Rita, Bento, Artur, Bjornson, Marta, Herold, Laura, Tomé, Ana S., Martins, Celso, Fanuel, Mathieu, Martins, Isabel, Bakan, Bénédicte, Zipfel, Cyril and Silva Pereira, Cristina (2024) Cutin-derived oligomers induce hallmark plant immune responses. Journal of Experimental Botany, 75 (16). pp. 5146-5161. ISSN 0022-0957

Márquez-Moñino, María Ángeles, Ortega-García, Raquel, Whitfield, Hayley, Riley, Andrew M., Infantes, Lourdes, Garrett, Shane W., Shipton, Megan L., Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109, Potter, Barry V. L. and González, Beatriz (2024) Substrate promiscuity of inositol 1,4,5-trisphosphate kinase driven by structurally-modified ligands and active site plasticity. Nature Communications, 15. ISSN 2041-1723

Mühlenbeck, Henning, Tsutsui, Yuko, Lemmon, Mark A., Bender, Kyle W. and Zipfel, Cyril (2024) Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. eLife, 12. ISSN 2050-084X

Nirwan, Shradha, Chatterjee, Anupriya, Cevik, Volkan, Holub, Eric B., Jones, Jonathan D. G., Tewari, Anand Kumar, Shrivastava, Neeraj, Agnihotri, Abha and Sharma, Pankaj (2024) Genetic manipulation of Indian mustard genotypes with WRR-gene(s) confers resistance against Albugo candida. Molecular Biology Reports, 51. ISSN 0301-4851

Payet, Rocky D., Bilham, Lorelei L., Kabir, Shah Md Tamim, Monaco, Serena, Norcott, Ash R. ORCID: https://orcid.org/0000-0002-1585-1700, Allen, Mellieha G. E., Zhu, Xiao-Yu, Davy, Anthony J. ORCID: https://orcid.org/0000-0002-7658-7106, Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109, Todd, Jonathan D. and Miller, J. Benjamin ORCID: https://orcid.org/0000-0003-0882-033X (2024) Elucidation of Spartina dimethylsulfoniopropionate synthesis genes enables engineering of stress tolerant plants. Nature Communications, 15. ISSN 2041-1723

Rhodes, Jack and Zipfel, Cyril (2024) Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Plant Peptide Hormones and Growth Factors. Methods in Molecular Biology (1). Humana Press Inc, pp. 23-35. ISBN 978-1-0716-3510-0

Sakai, Toshiyuki, Contreras, Mauricio P., Martinez-Anaya, Claudia, Lüdke, Daniel, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Wu, Chih-Hang and Adachi, Hiroaki (2024) The NRC0 gene cluster of sensor and helper NLR immune receptors is functionally conserved across asterid plants. The Plant Cell, 36 (9). pp. 3344-3361. ISSN 1040-4651

Sharma, Yogesh, Hemmings, Andrew M. ORCID: https://orcid.org/0000-0003-3053-3134, Deshmukh, Rupesh and Pareek, Ashwani (2024) Metalloid transporters in plants: Bridging the gap in molecular structure and physiological exaptation. Journal of Experimental Botany. ISSN 0022-0957

Snoeck, Simon, Lee, Hyun Kyung, Schmid, Marc W., Bender, Kyle W., Neeracher, Matthias J., Fernández-Fernández, Alvaro D., Santiago, Julia and Zipfel, Cyril (2024) Leveraging coevolutionary insights and AI-based structural modeling to unravel receptor–peptide ligand-binding mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 121 (33). ISSN 0027-8424

Whitfield, Hayley L., Faba Rodriguez, Raquel, Shipton, Megan L., Li, Arthur W. H., Riley, Andrew M., Potter, Barry V. L., Hemmings, Andrew M. ORCID: https://orcid.org/0000-0003-3053-3134 and Brearley, Charles A. ORCID: https://orcid.org/0000-0001-6179-9109 (2024) Crystal structure and enzymology of Solanum tuberosum inositol tris/tetrakisphosphate kinase 1 (StITPK1). Biochemistry, 63 (1). pp. 42-52. ISSN 0006-2960

Yuen, Enoch Lok Him, Tumtas, Yasin, King, Freddie, Ibrahim, Tarhan, Chan, Lok I., Evangelisti, Edouard, Tulin, Frej, Skłenar, Jan, Menke, Frank L. H. ORCID: https://orcid.org/0000-0003-2490-4824, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315, Bubeck, Doryen, Schornack, Sebastian and Bozkurt, Tolga Osman (2024) A pathogen effector co-opts a host RabGAP protein to remodel pathogen interface and subvert defense-related secretion. Science Advances, 10 (40). ISSN 2375-2548

Zdrzałek, Rafał, Xi, Yuxuan, Langner, Thorsten, Bentham, Adam R., Petit-Houdenot, Yohann, De la Concepcion, Juan Carlos, Harant, Adeline, Shimizu, Motoki, Were, Vincent, Talbot, Nicholas J. ORCID: https://orcid.org/0000-0001-6434-7757, Terauchi, Ryohei, Kamoun, Sophien ORCID: https://orcid.org/0000-0002-0290-0315 and Banfield, Mark J. (2024) Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector. Proceedings of the National Academy of Sciences of the United States of America, 121 (28). ISSN 0027-8424