Items where Research Group is "Plant Sciences

A

Avissar-Whiting, Michele, Belliard, Frédérique, Bertozzi, Stefano M., Brand, Amy, Brown, Katherine, Clément-Stoneham, Géraldine, Dawson, Stephanie, Dey, Gautam, Ecer, Daniel, Edmunds, Scott C., Farley, Ashley, Fischer, Tara D., Franko, Maryrose, Fraser, James S., Funk, Kathryn, Ganier, Clarisse, Harrison, Melissa, Hatch, Anna, Hazlett, Haley, Hindle, Samantha, Hook, Daniel W., Hurst, Phil, Kamoun, Sophien, Kiley, Robert, Lacy, Michael M., LaFlamme, Marcel, Lawrence, Rebecca, Lemberger, Thomas, Leptin, Maria, Lumb, Elliott, MacCallum, Catriona J., Marcum, Christopher Steven, Marinello, Gabriele, Mendonça, Alex, Monaco, Sara, Neves, Kleber, Pattinson, Damian, Polka, Jessica K., Puebla, Iratxe, Rittman, Martyn, Royle, Stephen J., Saderi, Daniela, Sever, Richard, Shearer, Kathleen, Spiro, John E., Stern, Bodo, Taraborelli, Dario, Vale, Ron, Vasquez, Claudia G., Waltman, Ludo, Watt, Fiona M., Weinberg, Zara Y. and Williams, Mark (2024) Recommendations for accelerating open preprint peer review to improve the culture of science. PLoS Biology, 22 (2). ISSN 1544-9173

B

Barragan, Ana Cristina, Latorre, Sergio M., Malmgren, Angus, Harant, Adeline, Win, Joe, Sugihara, Yu, Burbano, Hernán A., Kamoun, Sophien and Langner, Thorsten (2024) Multiple horizontal mini-chromosome transfers drive genome evolution of clonal blast fungus lineages. Molecular Biology and Evolution, 41 (8). ISSN 0737-4038

C

Cabre, Lisa, Jing, Lun, Makechemu, Moffat, Heluin, Kylhan, Khamlichi, Sarah El, Leprince, Jérôme, Kiefer-Meyer, Marie Christine, Pluchon, Sylvain, Mollet, Jean Claude, Zipfel, Cyril and Nguema-Ona, Eric (2024) Additive and specific effects of elicitor treatments on the metabolic profile of Arabidopsis thaliana. Molecular Plant-Microbe Interactions, 37 (2). pp. 112-126. ISSN 0894-0282

Canham, James, Win, Joe and Kamoun, Sophien and GetGenome Network (2024) GetGenome: Overcoming inequalities in access to genomics technology. PLoS Biology, 22 (8). ISSN 1544-9173

Carroll, Joseph J., Sprigg, Colleen, Chilvers, Graham, Delso, Ignacio, Barker, Megan, Cox, Filipa, Johnson, David and Brearley, Charles A. (2024) LC-ICP-MS analysis of inositol phosphate isomers in soil offers improved sensitivity and fine‐scale mapping of inositol phosphate distribution. Methods in Ecology and Evolution, 15 (3). pp. 530-543. ISSN 2041-210X

Chia, Khong Sam, Kourelis, Jiorgos, Teulet, Albin, Vickers, Martin, Sakai, Toshiyuki, Walker, Joseph F., Schornack, Sebastian, Kamoun, Sophien and Carella, Philip (2024) The N-terminal domains of NLR immune receptors exhibit structural and functional similarities across divergent plant lineages. The Plant Cell, 36 (7). pp. 2491-2511. ISSN 1040-4651

Contreras, Mauricio P., Pai, Hsuan, Thompson, Rebecca, Marchal, Clemence, Claeys, Jules, Adachi, Hiroaki and Kamoun, Sophien (2024) The nucleotide-binding domain of NRC-dependent disease resistance proteins is sufficient to activate downstream helper NLR oligomerization and immune signaling. New Phytologist, 243 (1). pp. 345-361. ISSN 0028-646X

César-Razquin, Adrián, Casacuberta, Josep, Dalmay, Tamas, Federici, Silvia, Jacchia, Sara, Kagkli, Dafni Maria, Moxon, Simon and Papadopoulou, Nikoletta and European Food Safety Authority (EFSA) (2024) Technical Note on the quality of DNA sequencing for the molecular characterisation of genetically modified plants. EFSA Journal, 22 (4). ISSN 1831-4732

D

De la Concepcion, Juan Carlos, Langner, Thorsten, Fujisaki, Koki, Yan, Xia, Were, Vincent, Ching Lam, Anson Ho, Saado, Indira, Brabham, Helen J., Win, Joe, Yoshida, Kentaro, Talbot, Nicholas J., Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J. (2024) Zinc-finger (ZiF) fold secreted effectors form a functionally diverse family across lineages of the blast fungus Magnaporthe oryzae. PLoS Pathogens, 20 (6). ISSN 1553-7366

Dudey, Ashley P., Rigby, Jake M., Hughes, Gregory R., Stephenson, G. Richard, Storr, Thomas E., Chantry, Andrew and Hemmings, Andrew M. (2024) Expanding the inhibitor space of the WWP1 and WWP2 HECT E3 ligases. Journal of Enzyme Inhibition and Medicinal Chemistry, 39 (1). ISSN 1475-6366

G

Gladieux, Pierre, van Oosterhout, Cock, Fairhead, Sebastian, Jouet, Agathe, Ortiz, Diana, Ravel, Sebastien, Shrestha, Ram-Krishna, Frouin, Julien, He, Xiahong, Zhu, Youyong, Morel, Jean-Benoit, Huang, Huichuan, Kroj, Thomas and Jones, Jonathan D. G. (2024) Extensive immune receptor repertoire diversity in disease-resistant rice landraces. Current Biology, 34 (17). 3983-3995.e6. ISSN 0960-9822

Gonçalves Dias, Márcia, Doss, Bassem, Rawat, Anamika, Siegel, Kristen R., Mahathanthrige, Tharika, Sklenar, Jan, Rodriguez Gallo, Maria Camila, Derbyshire, Paul, Dharmasena, Thakshila, Cameron, Emma, Uhrig, R. Glen, Zipfel, Cyril, Menke, Frank L. H. and Monaghan, Jacqueline (2024) Subfamily C7 Raf-like kinases MRK1, RAF26, and RAF39 regulate immune homeostasis and stomatal opening in Arabidopsis thaliana. New Phytologist, 244 (6). pp. 2278-2294. ISSN 0028-646X

Goto, Yukihisa, Kadota, Yasuhiro, Mbengue, Malick, Lewis, Jennifer D., Matsui, Hidenori, Maki, Noriko, Ngou, Bruno Pok Man, Sklenar, Jan, Derbyshire, Paul, Shibata, Arisa, Ichihashi, Yasunori, Guttman, David S., Nakagami, Hirofumi, Suzuki, Takamasa, Menke, Frank L. H., Robatzek, Silke, Desveaux, Darrell, Zipfel, Cyril and Shirasu, Ken (2024) The leucine-rich repeat receptor kinase QSK1 regulates PRR-RBOHD complexes targeted by the bacterial effector HopF2Pto. The Plant Cell, 36 (12). pp. 4932-4951. ISSN 1040-4651

Goto, Yukihisa, Maki, Noriko, Sklenar, Jan, Derbyshire, Paul, Menke, Frank L. H., Zipfel, Cyril, Kadota, Yasuhiro and Shirasu, Ken (2024) The phagocytosis oxidase/Bem1p domain-containing protein PB1CP negatively regulates the NADPH oxidase RBOHD in plant immunity. New Phytologist, 241 (4). pp. 1763-1779. ISSN 0028-646X

J

Jones, Jonathan D. G., Staskawicz, Brian J. and Dangl, Jeffery L. (2024) The plant immune system: From discovery to deployment. Cell, 187 (9). pp. 2095-2116. ISSN 0092-8674

K

Kaufmann, Moritz, Li, Leilei, Van Poucke, Christof, Rhyner, Nicola, De Tender, Caroline, Uyttendaele, Mieke, Heyndrickx, Marc, Zipfel, Cyril, Pothier, Joël F. and Cottyn, Bart (2024) Soil type and associated microbiome influence chitin's growth promotion effect in lettuce. Phytobiomes Journal, 8 (3). pp. 248-261. ISSN 2471-2906

Kim, Dae Sung, Li, Yufei, Ahn, Hee-Kyung, Woods-Tör, Alison, Cevik, Volkan, Furzer, Oliver J., Ma, Wenbo, Tör, Mahmut and Jones, Jonathan D. G. (2024) ATR2Cala2 from Arabidopsis-infecting downy mildew requires 4 TIR-NLR immune receptors for full recognition. New Phytologist, 243 (1). pp. 330-344. ISSN 0028-646X

Kim, Seyun, Bhandari, Rashna, Brearley, Charles A. and Saiardi, Adolfo (2024) The inositol phosphate signalling network in physiology and disease. Trends in Biochemical Sciences, 49 (11). pp. 969-985. ISSN 0968-0004

Kourelis, Jiorgos, Schuster, Mariana, Demir, Fatih, Mattinson, Oliver, Krauter, Sonja, Kahlon, Parvinderdeep S., O’Grady, Ruby, Royston, Samantha, Bravo-Cazar, Ana Lucía, Mooney, Brian C., Huesgen, Pitter F., Kamoun, Sophien and van der Hoorn, Renier A. L. (2024) Bioengineering secreted proteases converts divergent Rcr3 orthologs and paralogs into extracellular immune co-receptors. Plant Cell, 36 (9). pp. 3260-3276. ISSN 1040-4651

L

Liu, Chen, Hatzianestis, Ioannis H., Pfirrmann, Thorsten, Reza, Salim H., Minina, Elena A., Moazzami, Ali, Stael, Simon, Gutierrez–Beltran, Emilio, Pitsili, Eugenia, Dörmann, Peter, D’Andrea, Sabine, Gevaert, Kris, Romero–Campero, Francisco, Ding, Pingtao, Nowack, Moritz K., Van Breusegem, Frank, Jones, Jonathan D. G., Bozhkov, Peter V. and Moschou, Panagiotis N. (2024) Seed longevity is controlled by metacaspases. Nature Communications, 15 (1). ISSN 2041-1723

M

Madhuprakash, Jogi, Toghani, Amir Ali, Contreras, Mauricio P., Posbeyikian, Andres, Richardson, Jake, Kourelis, Jiorgos, Bozkurt, Tolga O., Webster, Michael W. and Kamoun, Sophien (2024) A disease resistance protein triggers oligomerization of its NLR helper into a hexameric resistosome to mediate innate immunity. Science Advances, 10 (45). ISSN 2375-2548

Madsen, Claus Krogh, Brearley, Charles Alistair, Harholt, Jesper and Brinch-Pedersen, Henrik A. (2024) Optimized barley phytase gene expression by focused FIND-IT screening for mutations in cis-acting regulatory elements. Frontiers in Plant Science, 15. ISSN 1664-462X

Moreira, Carlos J. S., Escórcio, Rita, Bento, Artur, Bjornson, Marta, Herold, Laura, Tomé, Ana S., Martins, Celso, Fanuel, Mathieu, Martins, Isabel, Bakan, Bénédicte, Zipfel, Cyril and Silva Pereira, Cristina (2024) Cutin-derived oligomers induce hallmark plant immune responses. Journal of Experimental Botany, 75 (16). pp. 5146-5161. ISSN 0022-0957

Márquez-Moñino, María Ángeles, Ortega-García, Raquel, Whitfield, Hayley, Riley, Andrew M., Infantes, Lourdes, Garrett, Shane W., Shipton, Megan L., Brearley, Charles A., Potter, Barry V. L. and González, Beatriz (2024) Substrate promiscuity of inositol 1,4,5-trisphosphate kinase driven by structurally-modified ligands and active site plasticity. Nature Communications, 15. ISSN 2041-1723

Mühlenbeck, Henning, Tsutsui, Yuko, Lemmon, Mark A., Bender, Kyle W. and Zipfel, Cyril (2024) Allosteric activation of the co-receptor BAK1 by the EFR receptor kinase initiates immune signaling. eLife, 12. ISSN 2050-084X

N

Nirwan, Shradha, Chatterjee, Anupriya, Cevik, Volkan, Holub, Eric B., Jones, Jonathan D. G., Tewari, Anand Kumar, Shrivastava, Neeraj, Agnihotri, Abha and Sharma, Pankaj (2024) Genetic manipulation of Indian mustard genotypes with WRR-gene(s) confers resistance against Albugo candida. Molecular Biology Reports, 51. ISSN 0301-4851

P

Payet, Rocky D., Bilham, Lorelei L., Kabir, Shah Md Tamim, Monaco, Serena, Norcott, Ash R., Allen, Mellieha G. E., Zhu, Xiao-Yu, Davy, Anthony J., Brearley, Charles A., Todd, Jonathan D. and Miller, J. Benjamin (2024) Elucidation of Spartina dimethylsulfoniopropionate synthesis genes enables engineering of stress tolerant plants. Nature Communications, 15. ISSN 2041-1723

Prince, David C., Wirén, Anders, Huggins, Timothy J., Collins, David H., Dalmay, Tamas and Bourke, Andrew F. G. (2024) Molecular basis of eusocial complexity: The case of worker reproductivity in bees. Genome Biology and Evolution, 16 (12). ISSN 1759-6653

R

Rhodes, Jack and Zipfel, Cyril (2024) Identification of Bioactive Phytocytokines Using Transcriptomic Data and Plant Bioassays. In: Plant Peptide Hormones and Growth Factors. Methods in Molecular Biology (1). Humana Press Inc, pp. 23-35. ISBN 978-1-0716-3510-0

Rigby, Jake M., Chantry, Andrew, Hemmings, Andrew M., Richards, Christopher J., Stephenson, G. Richard and Storr, Thomas E. (2024) An improved synthesis of 2,3-diamino-5,6-dichloropyrazine: A useful heterocyclic scaffold. Synthesis, 56 (23). pp. 3587-3592. ISSN 0039-7881

S

Sakai, Toshiyuki, Contreras, Mauricio P., Martinez-Anaya, Claudia, Lüdke, Daniel, Kamoun, Sophien, Wu, Chih-Hang and Adachi, Hiroaki (2024) The NRC0 gene cluster of sensor and helper NLR immune receptors is functionally conserved across asterid plants. The Plant Cell, 36 (9). pp. 3344-3361. ISSN 1040-4651

Sharma, Yogesh, Hemmings, Andrew M., Deshmukh, Rupesh and Pareek, Ashwani (2024) Metalloid transporters in plants: Bridging the gap in molecular structure and physiological exaptation. Journal of Experimental Botany. ISSN 0022-0957

Snoeck, Simon, Lee, Hyun Kyung, Schmid, Marc W., Bender, Kyle W., Neeracher, Matthias J., Fernández-Fernández, Alvaro D., Santiago, Julia and Zipfel, Cyril (2024) Leveraging coevolutionary insights and AI-based structural modeling to unravel receptor–peptide ligand-binding mechanisms. Proceedings of the National Academy of Sciences of the United States of America, 121 (33). ISSN 0027-8424

W

Whitfield, Hayley L., Faba Rodriguez, Raquel, Shipton, Megan L., Li, Arthur W. H., Riley, Andrew M., Potter, Barry V. L., Hemmings, Andrew M. and Brearley, Charles A. (2024) Crystal structure and enzymology of Solanum tuberosum inositol tris/tetrakisphosphate kinase 1 (StITPK1). Biochemistry, 63 (1). pp. 42-52. ISSN 0006-2960

Y

Yuen, Enoch Lok Him, Tumtas, Yasin, King, Freddie, Ibrahim, Tarhan, Chan, Lok I., Evangelisti, Edouard, Tulin, Frej, Skłenar, Jan, Menke, Frank L. H., Kamoun, Sophien, Bubeck, Doryen, Schornack, Sebastian and Bozkurt, Tolga Osman (2024) A pathogen effector co-opts a host RabGAP protein to remodel pathogen interface and subvert defense-related secretion. Science Advances, 10 (40). ISSN 2375-2548

Z

Zdrzałek, Rafał, Xi, Yuxuan, Langner, Thorsten, Bentham, Adam R., Petit-Houdenot, Yohann, De la Concepcion, Juan Carlos, Harant, Adeline, Shimizu, Motoki, Were, Vincent, Talbot, Nicholas J., Terauchi, Ryohei, Kamoun, Sophien and Banfield, Mark J. (2024) Bioengineering a plant NLR immune receptor with a robust binding interface toward a conserved fungal pathogen effector. Proceedings of the National Academy of Sciences of the United States of America, 121 (28). ISSN 0027-8424