Items where Research Group is "Computational Biology

Published

Alzahrani, Salma, Applegate, Christopher, Swarbreck, David, Dalmay, Tamas, Folkes, Leighton and Moulton, Vincent (2022) Degradome assisted plant MicroRNA prediction under alternative annotation criteria. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (6). pp. 3374-3383. ISSN 1545-5963

Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent and Mock, Thomas (2022) Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. Microbiome, 10. ISSN 2049-2618

Greenman, Chris D. (2022) Time series path integral expansions for stochastic processes. Journal of Statistical Physics, 187 (3). ISSN 0022-4715

Huber, K. T., Moulton, V. and Scholz, G. E. (2022) Forest-based networks. Bulletin of Mathematical Biology, 84. ISSN 0092-8240

Huber, Katharina, Moulton, Vincent and Scholz, Guillaume (2022) Overlaid species forests. Discrete Applied Mathematics, 309. pp. 110-122. ISSN 0166-218X

Huber, Katharina, van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent and Murakami, Yuki (2022) Level-2 networks from shortest and longest distances. Discrete Applied Mathematics, 306. pp. 138-165. ISSN 0166-218X

Huber, Katharina T. and Maher, Liam J. (2022) The hybrid number of a ploidy profile. Journal of Mathematical Biology, 85 (3). ISSN 0303-6812

Iakovou, Georgios, Laycock, Stephen D. and Hayward, Steven (2022) Interactive flexible-receptor molecular docking in VR using DockIT. Journal of Chemical Information and Modeling, 62 (23). 5855–5861. ISSN 1549-9596

Mock, Thomas, Boulton, William, Balmonte, John Paul, Barry, Kevin, Bertilsson, Stefan, Bowman, Jeff, Buck, Moritz, Bratbak, Gunnar, Chamberlain, Emelia J., Cunliffe, Michael, Creamean, Jessie, Ebenhöh, Oliver, Eggers, Sarah Lena, Fong, Allison A., Gardner, Jessie, Gradinger, Rolf, Granskog, Mats A., Havermans, Charlotte, Hill, Thomas, Hoppe, Clara J. M., Korte, Kerstin, Larsen, Aud, Müller, Oliver, Nicolaus, Anja, Oldenburg, Ellen, Popa, Ovidiu, Rogge, Swantje, Schäfer, Hendrik, Shoemaker, Katyanne, Snoeijs-Leijonmalm, Pauline, Torstensson, Anders, Valentin, Klaus, Vader, Anna, Barry, Kerrie, Chen, I.-M. A., Clum, Alicia, Copeland, Alex, Daum, Chris, Eloe-Fadrosh, Emiley, Foster, Brian, Foster, Bryce, Grigoriev, Igor V., Huntemann, Marcel, Ivanova, Natalia, Kuo, Alan, Kyrpides, Nikos C., Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K., Salamov, Asaf, Roux, Simon, Varghese, Neha, Woyke, Tanja, Wu, Dongying, Leggett, Richard M., Moulton, Vincent and Metfies, Katja (2022) Multiomics in the central Arctic Ocean for benchmarking biodiversity change. PLoS Biology, 20 (10). ISSN 1544-9173

Mock, Thomas, Hodgkinson, Kat, Wu, Taoyang, Moulton, Vincent, Duncan, Anthony, Oosterhout, Cock van and Pichler, Monica (2022) Structure and Evolution of Diatom Nuclear Genes and Genomes. In: The Molecular Life of Diatoms. Springer, pp. 111-145. ISBN 9783030924980

Moulton, Vincent and Spillner, Andreas (2022) Order distances and split systems. Order, 39 (2). 291–308. ISSN 0167-8094

Moulton, Vincent and Wu, Taoyang (2022) Posets and spaces of k-noncrossing RNA structures. SIAM Journal on Discrete Mathematics, 36 (3). pp. 1586-1611. ISSN 0895-4801

Xu, Junlin, Cui, Lingyu, Zhuang, Jujuan, Meng, Yajie, Bing, Pingping, He, Binsheng, Tian, Geng, Pui, Choi Kwok, Wu, Taoyang, Wang, Bing and Yang, Jialiang (2022) Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. Computers in Biology and Medicine, 146. ISSN 0010-4825

Ye, Naihao, Han, Wentao, Toseland, Andrew, Wang, Yitao, Fan, Xiao, Xu, Dong, van Oosterhout, Cock, Grigoriev, Igor V., Tagliabue, Alessandro, Zhang, Jian, Zhang, Yan, Ma, Jian, Qiu, Huan, Li, Youxun, Zhang, Xiaowen and Mock, Thomas and Sea of Change Consortium (2022) The role of zinc in the adaptive evolution of polar phytoplankton. Nature Ecology & Evolution, 6 (7). pp. 965-978. ISSN 2397-334X

van Iersel, Leo, Kole, Sjors, Moulton, Vincent and Nipius, Leonie (2022) An algorithm for reconstructing level-2 phylogenetic networks from trinets. Information Processing Letters, 178. ISSN 0020-0190