Items where Research Group is "Computational Biology

A

Alzahrani, Salma, Applegate, Christopher, Swarbreck, David, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, Folkes, Leighton and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2022) Degradome assisted plant MicroRNA prediction under alternative annotation criteria. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 19 (6). pp. 3374-3383. ISSN 1545-5963

D

Duncan, Anthony, Barry, Kerrie, Daum, Chris, Eloe-Fadrosh, Emiley, Roux, Simon, Schmidt, Katrin, Tringe, Susannah G., Valentin, Klaus U., Varghese, Neha, Salamov, Asaf, Grigoriev, Igor V., Leggett, Richard M., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2022) Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans. Microbiome, 10. ISSN 2049-2618

G

Greenman, Chris D. (2022) Time series path integral expansions for stochastic processes. Journal of Statistical Physics, 187 (3). ISSN 0022-4715

H

Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, G. E. (2022) Forest-based networks. Bulletin of Mathematical Biology, 84. ISSN 0092-8240

Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Scholz, Guillaume (2022) Overlaid species forests. Discrete Applied Mathematics, 309. pp. 110-122. ISSN 0166-218X

Huber, Katharina, van Iersel, Leo, Janssen, Remie, Jones, Mark, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yuki (2022) Level-2 networks from shortest and longest distances. Discrete Applied Mathematics, 306. pp. 138-165. ISSN 0166-218X

Huber, Katharina T. and Maher, Liam J. (2022) The hybrid number of a ploidy profile. Journal of Mathematical Biology, 85 (3). ISSN 0303-6812

I

Iakovou, Georgios, Laycock, Stephen D. and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2022) Interactive flexible-receptor molecular docking in VR using DockIT. Journal of Chemical Information and Modeling, 62 (23). 5855–5861. ISSN 1549-9596

M

Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Boulton, William, Balmonte, John Paul, Barry, Kevin, Bertilsson, Stefan, Bowman, Jeff, Buck, Moritz, Bratbak, Gunnar, Chamberlain, Emelia J., Cunliffe, Michael, Creamean, Jessie, Ebenhöh, Oliver, Eggers, Sarah Lena, Fong, Allison A., Gardner, Jessie, Gradinger, Rolf, Granskog, Mats A., Havermans, Charlotte, Hill, Thomas, Hoppe, Clara J. M., Korte, Kerstin, Larsen, Aud, Müller, Oliver, Nicolaus, Anja, Oldenburg, Ellen, Popa, Ovidiu, Rogge, Swantje, Schäfer, Hendrik, Shoemaker, Katyanne, Snoeijs-Leijonmalm, Pauline, Torstensson, Anders, Valentin, Klaus, Vader, Anna, Barry, Kerrie, Chen, I.-M. A., Clum, Alicia, Copeland, Alex, Daum, Chris, Eloe-Fadrosh, Emiley, Foster, Brian, Foster, Bryce, Grigoriev, Igor V., Huntemann, Marcel, Ivanova, Natalia, Kuo, Alan, Kyrpides, Nikos C., Mukherjee, Supratim, Palaniappan, Krishnaveni, Reddy, T. B. K., Salamov, Asaf, Roux, Simon, Varghese, Neha, Woyke, Tanja, Wu, Dongying, Leggett, Richard M., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Metfies, Katja (2022) Multiomics in the central Arctic Ocean for benchmarking biodiversity change. PLoS Biology, 20 (10). ISSN 1544-9173

Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Hodgkinson, Kat, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Duncan, Anthony, Oosterhout, Cock van ORCID: https://orcid.org/0000-0002-5653-738X and Pichler, Monica (2022) Structure and Evolution of Diatom Nuclear Genes and Genomes. In: The Molecular Life of Diatoms. Springer, pp. 111-145. ISBN 9783030924980

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2022) Order distances and split systems. Order, 39 (2). 291–308. ISSN 0167-8094

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2022) Posets and spaces of k-noncrossing RNA structures. SIAM Journal on Discrete Mathematics, 36 (3). pp. 1586-1611. ISSN 0895-4801

V

van Iersel, Leo, Kole, Sjors, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Nipius, Leonie (2022) An algorithm for reconstructing level-2 phylogenetic networks from trinets. Information Processing Letters, 178. ISSN 0020-0190

X

Xu, Junlin, Cui, Lingyu, Zhuang, Jujuan, Meng, Yajie, Bing, Pingping, He, Binsheng, Tian, Geng, Pui, Choi Kwok, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Wang, Bing and Yang, Jialiang (2022) Evaluating the performance of dropout imputation and clustering methods for single-cell RNA sequencing data. Computers in Biology and Medicine, 146. ISSN 0010-4825

Y

Ye, Naihao, Han, Wentao, Toseland, Andrew, Wang, Yitao, Fan, Xiao, Xu, Dong, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X, Grigoriev, Igor V., Tagliabue, Alessandro, Zhang, Jian, Zhang, Yan, Ma, Jian, Qiu, Huan, Li, Youxun, Zhang, Xiaowen and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 and Sea of Change Consortium (2022) The role of zinc in the adaptive evolution of polar phytoplankton. Nature Ecology & Evolution, 6 (7). pp. 965-978. ISSN 2397-334X