Items where Research Group is "Computational Biology

Article

Araujo-Granda, Pablo, Ginovart, Marta, Gras, Anna and Moulton, Vincent (2016) INDISIM-Paracoccus, an individual-based and thermodynamic model for a denitrifying bacterium. Journal of Theoretical Biology, 403. 45–58. ISSN 0022-5193

Bastkowski, Sarah, Moulton, Vincent, Spillner, Andreas and Wu, Taoyang (2016) The minimum evolution problem is hard:A link between tree inference and graph clustering problems. Bioinformatics, 32 (4). pp. 518-522. ISSN 1367-4803

Beerenwenko, Niko, Greenman, Christopher and Lagergren, Jens (2016) Computational cancer biology: An evolutionary perspective. PLoS Computational Biology, 12 (2). ISSN 1553-734X

Behjati, Sam, Gundem, Gunes, Wedge, David C., Roberts, Nicola D., Tarpey, Patrick S., Cooke, Susanna L., Van Loo, Peter, Alexandrov, Ludmil B., Ramakrishna, Manasa, Davies, Helen, Nik-Zainal, Serena, Hardy, Claire, Latimer, Calli, Raine, Keiran M., Stebbings, Lucy, Menzies, Andy, Jones, David, Shepherd, Rebecca, Butler, Adam P., Teague, Jon W., Jorgensen, Mette, Khatri, Bhavisha, Pillay, Nischalan, Shlien, Adam, Futreal, P. Andrew, Badie, Christophe, Cooper, Colin S., Eeles, Rosalind A., Easton, Douglas, Foster, Christopher, Neal, David E., Brewer, Daniel S., Hamdy, Freddie, Lu, Yong-Jie, Lynch, Andrew G., Massi, Charlie E., Ng, Anthony, Whitaker, Hayley C., Yu, Yongwei, Zhang, Hongwei, Bancroft, Elizabeth, Berney, Dan, Camacho, Niedzica, Corbishley, Cathy, Dadaev, Tokhir, Dennis, Nening, Dudderidge, Tim, Edwards, Sandra, Fisher, Cyril, Ghori, Jilur, Gnanapragasam, Vincent J., Greenman, Christopher, Hawkins, Steve, Hazell, Steven, Howat, Will, Karaszi, Katalin, Kay, Jonathan, Kote-Jarai, Zsofia, Kremeyer, Barbara, Kumar, Pardeep, Lambert, Adam, Leongamornlert, Daniel, Livni, Naomi, Luxton, Hayley, Matthews, Lucy, Mayer, Erik, Merson, Susan, Nicol, David, Ogden, Christopher, O'Meara, Sarah, Pelvender, Gill, Shah, Nimish C., Tavare, Simon, Thomas, Sarah, Thompson, Alan, Verrill, Claire, Warren, Anne, Zamora, Jorge, McDermott, Ultan, Bova, G. Steven, Richardson, Andrea L., Flanagan, Adrienne M., Stratton, Michael R. and Campbell, Peter J. (2016) Mutational signatures of ionizing radiation in second malignancies. Nature Communications, 7. ISSN 2041-1723

Chou, Tom and Greenman, Chris D. (2016) A hierarchical kinetic theory of birth, death, and fission in age-structured interacting populations. Journal of Statistical Physics, 164 (1). pp. 49-76. ISSN 0022-4715

Dress, A, Huber, Katharina, Koolen, Jack, Moulton, Vincent and Spillner, Andreas (2016) Characterizing block graphs in terms of their vertex-induced partitions. Australasian Journal of Combinatorics, 66 (1). pp. 1-9. ISSN 1034-4942

Greenman, C. D., Cooke, S. L., Marshall, J., Stratton, M. R. and Campbell, P. J. (2016) Modeling the evolution space of breakage fusion bridge cycles with a stochastic folding process. Journal of Mathematical Biology, 72 (1). pp. 47-86. ISSN 0303-6812

Greenman, Christopher and Chou, Tom (2016) Kinetic theory of age-structured stochastic birth-death processes. Physical Review E, 93 (1). ISSN 1539-3755

Huber, Katharina, Moulton, Vincent, Steel, Mike and Wu, Taoyang (2016) Folding and unfolding phylogenetic trees and networks. Journal of Mathematical Biology, 73 (6). 1761–1780. ISSN 0303-6812

Huber, Katharina, Moulton, Vincent and Wu, Taoyang (2016) Transforming phylogenetic networks: Moving beyond tree space. Journal of Theoretical Biology, 404. pp. 30-39. ISSN 0022-5193

Huber, Katharina T., Linz, Simone, Moulton, Vincent and Wu, Taoyang (2016) Spaces of phylogenetic networks from generalized nearest-neighbor interchange operations. Journal of Mathematical Biology, 72 (3). pp. 699-725. ISSN 0303-6812

Iakovou, Georgios, Laycock, Stephen and Hayward, Steven (2016) Determination of locked interfaces in biomolecular complexes using Haptimol_RD. Biophysics and Physicobiology, 13. pp. 97-103. ISSN 2189-4779

James, Stephen A, West, Claire, Davey, Robert P, Dicks, Jo and Roberts, Ian N (2016) Prevalence and dynamics of ribosomal DNA micro-heterogeneity are linked to population history in two contrasting yeast species. Scientific Reports, 6. ISSN 2045-2322

Kawashima, Cintia G., Augusto Guimaraes, Gustavo, Regina Nogueira, Sonia, Maclean, Dan, Cook, Doug R., Steuernagel, Burkhard, Baek, Jongmin, Bouyioukos, Costas, do V A Melo, Bernardo, Tristao, Gustavo, Camargos de Oliveira, Jamile, Rauscher, Gilda, Mittal, Shipra, Panichelli, Lisa, Bacot, Karen, Johnson, Ebony, Iyer, Geeta, Tabor, Girma, Wulff, Brande B. H., Ward, Eric, Rairdan, Gregory J., Broglie, Karen E., Wu, Gusui, Van Esse, H. Peter, Jones, Jonathan D. G. and Brommonschenkel, Sergio H. (2016) A pigeonpea gene confers resistance to Asian soybean rust in soybean. Nature Biotechnology, 34 (6). 661–665. ISSN 1087-0156

Kelk, Steven, Fischer, Mareike, Moulton, Vincent and Wu, Taoyang (2016) Reduction rules for the maximum parsimony distance on phylogenetic trees. Theoretical Computer Science, 646. pp. 1-15. ISSN 0304-3975

Mock, Thomas, Daines, Stuart, Geider, Richard, Collins, Sinead, Metoviev, Metovi, Millar, Andrew J, Moulton, Vincent and Lenton, Timothy (2016) Bridging the gap between omics and earth system science to better understand how environmental change impacts marine microbes. Global Change Biology, 22 (1). pp. 61-75. ISSN 1354-1013

Oldman, James, Wu, Taoyang, van Iersel, Leo and Moulton, Vincent (2016) TriLoNet: Piecing together small networks to reconstruct reticulate evolutionary histories. Molecular Biology and Evolution, 33 (8). pp. 2151-2162. ISSN 0737-4038

Wu, Taoyang and Choi, Kwok Pui (2016) On joint subtree distributions under two evolutionary models. Theoretical Population Biology, 108. pp. 13-23. ISSN 1096-0325