Items where Research Group is "Computational Biology

A

Asque, Christopher, Day, Andy and Laycock, Stephen (2014) Augmenting graphical user interfaces with haptic assistance for motion-impaired operators. International Journal of Human-Computer Studies, 72 (10-11). pp. 689-703. ISSN 1071-5819

B

Balvočiūtė, Monika, Spillner, Andreas and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2014) FlatNJ: A novel network-based approach to visualize evolutionary and biogeographical relationships. Systematic Biology, 63 (3). pp. 383-396. ISSN 1076-836X

Bastkowski, Sarah, Spillner, Andreas and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2014) Fishing for minimum evolution trees with Neighbor-Nets. Information Processing Letters, 114 (1-2). pp. 13-18. ISSN 0020-0190

C

Cawley, G.C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, N.L.C. (2014) Kernel learning at the first level of inference. Neural Networks, 53. pp. 69-80. ISSN 0893-6080

D

Dress, Andreas, Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Steel, Mike (2014) A matroid associated with a phylogenetic tree. Discrete Mathematics and Theoretical Computer Science, 16 (2). pp. 41-56. ISSN 1365-8050

F

Fisher, Mark, Applegate, Christopher, Ryalat, Mohammad, Laycock, Stephen, Hulse, Mark, Emmens, Daniel and Bell, Duncan (2014) Evaluation of 3D printed immobilisation shells for head and neck IMRT. Open Journal of Radiology, 04 (04). pp. 322-328. ISSN 2164-3024

G

Greco, Mark, Bell, Duncan, Woolnough, Lewis, Laycock, Stephen, Corps, Nick, Mortimore, David and Hudson, Diana (2014) 3-D visualisation, printing, and volume determination of the tracheal respiratory system in the adult desert locust, Schistocerca gregaria. Entomologia Experimentalis et Applicata, 152 (1). pp. 42-51. ISSN 0013-8703

H

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604, Leader, David P., Al-Shubailly, Fawzia and Milner-White, E. James (2014) Rings and ribbons in protein structures: Characterization using helical parameters and Ramachandran plots for repeating dipeptides. Proteins: Structure Function and Bioinformatics, 82 (2). pp. 230-239. ISSN 0887-3585

Herrmann, Sven and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2014) Computing the blocks of a quasi-median graph. Discrete Applied Mathematics, 179. pp. 129-138. ISSN 0166-218X

Huber, K. T. ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Wu, T. ORCID: https://orcid.org/0000-0002-2663-2001 (2014) Representing partitions on trees. SIAM Journal on Discrete Mathematics, 28 (3). pp. 1152-1172. ISSN 0895-4801

Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 and Steel, Mike (2014) Reconstructing fully-resolved trees from triplet cover distances. Electronic Journal of Combinatorics, 21 (2). ISSN 1077-8926

I

Iakovou, Georgios, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen (2014) A real-time proximity querying algorithm for haptic-based molecular docking. Faraday Discussions, 169. pp. 359-377. ISSN 1359-6640

L

Lopez-Gomollon, Sara, Beckers, Matthew, Rathjen, Tina, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Maumus, Florian, Mohorianu, Irina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 (2014) Global discovery and characterization of small non-coding RNAs in marine microalgae. BMC Genomics, 15 (1). ISSN 1471-2164

P

Popescu, Andrei-Alin, Harper, Andrea, Trick, Martin, Bancroft, Ian and Huber, Katharina T. ORCID: https://orcid.org/0000-0002-6368-7511 (2014) A novel and fast approach for population structure inference using kernel-PCA and optimization (PSIKO). Genetics, 198 (4). pp. 1421-31. ISSN 1943-2631

R

Rallapalli, Ghanasyam, Kemen, Eric M, Robert-Seilaniantz, Alexandre, Segonzac, Cécile, Etherington, Graham J, Sohn, Kee Hoon, MacLean, Daniel ORCID: https://orcid.org/0000-0003-1032-0887 and Jones, Jonathan D G (2014) EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics. BMC Genomics, 15. ISSN 1471-2164

Reynolds, D. T., Laycock, S. D. and Day, A. M. (2014) Real-time accumulation of occlusion-based snow. The Visual Computer, 31. pp. 689-700. ISSN 0178-2789

Roshan, A., Jones, P. H. and Greenman, C. D. (2014) Exact, time-independent estimation of clone size distributions in normal and mutated cells. Journal of The Royal Society Interface, 11 (99). ISSN 1742-5689

T

Taylor, D., Cawley, G. ORCID: https://orcid.org/0000-0002-4118-9095 and Hayward, S. ORCID: https://orcid.org/0000-0001-6959-2604 (2014) Quantitative method for the assignment of hinge and shear mechanism in protein domain movements. Bioinformatics, 30 (22). pp. 3189-3196. ISSN 1367-4803

Toseland, Andrew, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2014) Metatranscriptomes from diverse microbial communities: assessment of data reduction techniques for rigorous annotation. BMC Genomics, 15. ISSN 1471-2164

V

Van Iersel, Leo and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2014) Trinets encode tree-child and level-2 phylogenetic networks. Journal of Mathematical Biology, 68 (7). pp. 1707-1729. ISSN 0303-6812

Volkmann, Logan, Martyn, Iain, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, Andreas and Mooers, Arne O. (2014) Prioritizing populations for conservation using phylogenetic networks. PLoS One, 9 (2). ISSN 1932-6203

W

Wade, Amy S. I., Barov, Boris, Burfield, Ian J., Gregory, Richard D., Norris, Ken, Vorisek, Petr, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Butler, Simon ORCID: https://orcid.org/0000-0002-5111-5639 (2014) A niche-based framework to assess current monitoring of European forest birds and guide indicator species' selection. PLoS One, 9 (5). ISSN 1932-6203

West, Claire, James, Stephen A, Davey, Robert P, Dicks, Jo ORCID: https://orcid.org/0000-0003-1300-5233 and Roberts, Ian N (2014) Ribosomal DNA sequence heterogeneity reflects intraspecies phylogenies and predicts genome structure in two contrasting yeast species. Systematic Biology, 63 (4). pp. 543-554. ISSN 1063-5157

Z

Zhu, Sha, Than, Cuong and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2014) Clades and clans: a comparison study of two evolutionary models. Journal of Mathematical Biology, 71 (1). pp. 99-124. ISSN 0303-6812