Items where Research Group is "Computational Biology

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Cawley, G ORCID: https://orcid.org/0000-0002-4118-9095 (2011) Baseline Methods for Active Learning. In: JMLR: Workshop and Conference Proceedings 16. JMLR Workshop and Conference Proceedings, 16 . Microtome, pp. 47-57.

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Dress, A., Kåhrström, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2011) A ‘non-additive’ characterization of $${\wp}$$ -adic norms. Annals of Combinatorics, 15 (1). pp. 37-50. ISSN 0218-0006

Dress, A. W. M., Huber, K. T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Blocks and cut vertices of the Buneman graph. SIAM Journal on Discrete Mathematics, 25 (4). pp. 1902-1919.

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Fischer, Andrej, Greenman, Chris and Mustonen, Ville (2011) Germline fitness based scoring of cancer mutations. Genetics, 188 (2). pp. 383-393. ISSN 1943-2631

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Guyon, I, Cawley, G ORCID: https://orcid.org/0000-0002-4118-9095, Dror, G and Lemaire, V (2011) Results of the Active Learning Challenge. In: Workshop on Active Learning and Experimental Design. JMLR Workshop and Conference Proceedings, 16 . Microtome, pp. 19-45.

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Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Milner-White, E. James (2011) Simulation of the β- to α-sheet transition results in a twisted sheet for antiparallel and an α-nanotube for parallel strands: Implications for amyloid formation. Proteins: Structure, Function, and Bioinformatics. pp. 3193-3207. ISSN 1097-0134

Huber, Katharina T., Spillner, Andreas, Suchecki, Radoslaw and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Metrics on multi-labelled trees: interrelationships and diameter bounds. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (4). pp. 1029-1040. ISSN 1545-5963

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Mohorianu, I-I, Schwach, F, Jing, R, Lopez-Gomollon, S, Moxon, S ORCID: https://orcid.org/0000-0003-4644-1816, Szittya, G, Sorefan, K, Moulton, V ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, T ORCID: https://orcid.org/0000-0003-1492-5429 (2011) Profiling of short RNAs during fleshy fruit development reveals stage-specific sRNAome expression patterns. The Plant Journal, 67 (2). pp. 232-246. ISSN 1365-313X

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Nicolas, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2011) mRNA expression profiling reveals conserved and non-conserved miR-140 targets. RNA Biology, 8 (4). pp. 607-615. ISSN 1547-6286

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Pais, Helio, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: RNA Infrastructure and Networks. Advances in Experimental Medicine and Biology, 722 . Springer, pp. 239-254. ISBN 978-1-4939-4254-1

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Stephens, Philip J., Greenman, Chris D., Fu, Beiyuan, Yang, Fengtang, Bignell, Graham R., Mudie, Laura J., Pleasance, Erin D., Lau, King Wai, Beare, David, Stebbings, Lucy A., McLaren, Stuart, Lin, Meng-Lay, McBride, David J., Varela, Ignacio, Nik-Zainal, Serena, Leroy, Catherine, Jia, Mingming, Menzies, Andrew, Butler, Adam P., Teague, Jon W., Quail, Michael A., Burton, John, Swerdlow, Harold, Carter, Nigel P., Morsberger, Laura A., Iacobuzio-Donahue, Christine, Follows, George A., Green, Anthony R., Flanagan, Adrienne M., Stratton, Michael R., Futreal, P. Michael and Campbell, Peter J. (2011) Massive genomic rearrangement acquired in a single catastrophic event during cancer development. Cell, 144 (1). pp. 27-40. ISSN 0092-8674

Stjernqvist, Susann, Ryden, Tobias and Greenman, Chris D. (2011) Model-integrated estimation of normal tissue contamination for cancer SNP allelic copy number data. Cancer Informatics, 10. pp. 159-173. ISSN 1176-9351

Stocks, Matthew, Laycock, Stephen and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2011) Applying forces to elastic network models of large biomolecules using a haptic feedback device. Journal of Computer-Aided Molecular Design, 25 (3). pp. 203-211. ISSN 1573-4951

Székely, LA, Wang, Hua and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2011) The sum of the distances between the leaves of a tree and the ‘semi-regular’ property. Discrete Mathematics, 311 (13). pp. 1197-1203. ISSN 1872-681X

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Thuillard, Marc and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2011) Identifying and reconstructing lateral transfers from distance matrices by combing the minimum contradiction method and neighbor-net. Journal of Bioinformatics and Computational Biology, 9 (4). pp. 453-470. ISSN 0219-7200

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Varela, Ignacio, Tarpey, Patrick, Raine, Keiran, Huang, Dachuan, Ong, Choon Kiat, Stephens, Philip, Davies, Helen, Jones, David, Lin, Meng-lay, Teague, Jon, Bignell, Graham, Butler, Adam, Cho, Juok, Dalgliesh, Gillian L., Galappaththige, Danushka, Hardy, Claire, Jia, Mingming, Latimer, Calli, Lau, King Wai, Marshall, John, Mclaren, Stuart, Menzies, Andrew, Mudie, Laura, Stebbings, Lucy, Largaespada, David A., Wessels, L. F. A., Richard, Stephane, Kahnoski, Richard J., Anema, John, Tuveson, David A., Perez-Mancera, Pedro A., Mustonen, Ville, Fischer, Andrej, Adams, David J., Rust, Alistair, Chan-on, Waraporn, Subimerb, Chutima, Dykema, Karl, Furge, Kyle, Campbell, Peter J., Teh, Bin Tean, Stratton, Michael R., Futreal, P. Andrew and Greenman, Christopher (2011) Exome sequencing identifies frequent mutation of the SWI/SNF complex gene PBRM1 in renal carcinoma. Nature, 469 (7331). pp. 539-542. ISSN 1476-4687

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Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Zhang, Louxin (2011) Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree. BMC Bioinformatics, 12 (Suppl 9). ISSN 1471-2105

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Zhang, Guang Lan, Ansari, Hifzur Rahman, Bradley, Phil, Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Hertz, Tomer, Hue, Xihao, Jojic, Nebojsa, Kim, Yohan, Kohlbacher, Oliver, Lund, Ole, Lundegaardi, Claus, Magaret, Craig A., Nielsen, Morten, Papadopoulos, Harris, Raghava, G. P. S., Tal, Vider-Shalit, Xue, Li C., Yanover, Chen, Zhu, Shanfeng, Rock, Michael T., Crowe, James E., Panayiotou, Christos, Polycarpou, Marios M., Ducho, Włodzisław and Brusic, Vladimir (2011) Machine learning competition in immunology – Prediction of HLA class I binding peptides. Journal of Immunological Methods, 374 (1-2). pp. 1-4. ISSN 0022-1759