Items where Author is "Hall, Anthony"

Article

Guwela, Veronica F., Maliro, Moses F., Broadley, Martin R., Hawkesford, Malcolm J., Bokosi, James M., Grewal, Surbhi, Coombes, Benedict, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X, Yang, Caiyun, Banda, Mike, Wilson, Lolita and King, Julie (2024) The 4T and 7T introgressions from Amblyopyrum muticum and the 5Au introgression from Triticum urartu increases grain zinc and iron concentrations in Malawian wheat backgrounds. Frontiers in Plant Science, 15. ISSN 1664-462X

Coombes, Benedict, Lux, Thomas, Akhunov, Eduard and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2024) Introgressions lead to reference bias in wheat RNA-seq analysis. BMC Biology, 22. ISSN 1741-7007

Coombes, Benedict, Fellers, John P., Grewal, Surbhi, Rusholme-Pilcher, Rachel, Hubbart-Edwards, Stella, Yang, Cai-yun, Joynson, Ryan, King, Ian P., King, Julie and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2023) Whole-genome sequencing uncovers the structural and transcriptomic landscape of hexaploid wheat/Ambylopyrum muticum introgression lines. Plant Biotechnology Journal, 21 (3). pp. 482-496. ISSN 1467-7644

Molero, Gemma, Coombes, Benedict, Joynson, Ryan, Pinto, Francisco, Piñera-Chávez, Francisco J., Rivera-Amado, Carolina, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and Reynolds, Matthew P. (2023) Exotic alleles contribute to heat tolerance in wheat under field conditions. Communications Biology, 6. ISSN 2399-3642

Rees, Hannah, Rusholme-Pilcher, Rachel, Bailey, Paul, Colmer, Joshua, White, Benjamen, Reynolds, Connor, Ward, Sabrina Jaye, Coombes, Benedict, Graham, Calum A., de Barros Dantas, Luíza Lane, Dodd, Antony N. and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2022) Circadian regulation of the transcriptome in a complex polyploid crop. PLoS Biology, 20 (10). ISSN 1544-9173

Cuitun-Coronado, David, Rees, Hannah, Colmer, Joshua, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X, de Barros Dantas, Luíza L. and Dodd, Antony N. (2022) Circadian and diel regulation of photosynthesis in the bryophyte Marchantia polymorpha. Plant Cell and Environment, 45 (8). pp. 2381-2394. ISSN 0140-7791

Higgins, Janet, Santos, Bruno, Khanh, Tran Dang, Trung, Khuat Huu, Duong, Tran Duy, Doai, Nguyen Thi Phuong, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X, Dyer, Sarah, Ham, Le Huy, Caccamo, Mario and De Vega, Jose (2022) Genomic regions and candidate genes selected during the breeding of rice in Vietnam. Evolutionary Applications, 15 (7). pp. 1141-1161. ISSN 1752-4563

King, Julie, Grewal, Surbhi, Othmeni, Manel, Coombes, Benedict, Yang, Cai-yun, Walter, Nicola, Ashling, Stephen, Scholefield, Duncan, Walker, Jack, Hubbart-Edwards, Stella, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and King, Ian Phillip (2022) Introgression of the Triticum timopheevii genome into wheat detected by chromosome-specific Kompetitive allele specific PCR markers. Frontiers in Plant Science, 13. ISSN 1664-462X

Sales, Cristina R. G., Molero, Gemma, Evans, John R., Taylor, Samuel H., Joynson, Ryan, Furbank, Robert T., Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and Carmo-Silva, Elizabete (2022) Phenotypic variation in photosynthetic traits in wheat grown under field versus glasshouse conditions. Journal of Experimental Botany, 73 (10). pp. 3221-3237. ISSN 0022-0957

Grewal, Surbhi, Coombes, Benedict, Joynson, Ryan, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X, Fellers, John, Yang, Cai-yun, Scholefield, Duncan, Ashling, Stephen, Isaac, Peter, King, Ian P. and King, Julie (2022) Chromosome-specific KASP markers for detecting Amblyopyrum muticum segments in wheat introgression lines. Plant Genome, 15 (1). ISSN 1940-3372

Gardiner, Laura-Jayne, Rusholme-Pilcher, Rachel, Colmer, Josh, Rees, Hannah, Crescente, Juan Manuel, Carrieri, Anna Paola, Duncan, Susan, Pyzer-Knapp, Edward O., Krishna, Ritesh and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2021) Interpreting machine learning models to investigate circadian regulation and facilitate exploration of clock function. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 118 (32). ISSN 0027-8424

Joynson, Ryan, Molero, Gemma, Coombes, Benedict, Gardiner, Laura-Jayne, Rivera-Amado, Carolina, Piñera-Chávez, Francisco J., Evans, John R., Furbank, Robert T., Reynolds, Matthew P. and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2021) Uncovering candidate genes involved in photosynthetic capacity using unexplored genetic variation in Spring Wheat. Plant Biotechnology Journal, 19 (8). pp. 1537-1552. ISSN 1467-7644

Lyra, Danilo H., Griffiths, Cara A., Watson, Amy, Joynson, Ryan, Molero, Gemma, Igna, Alina-Andrada, Hassani-Pak, Keywan, Reynolds, Matthew P., Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and Paul, Matthew J. (2021) Gene-based mapping of trehalose biosynthetic pathway genes reveals association with source- and sink-related yield traits in a spring wheat panel. Food and Energy Security, 10 (3). ISSN 2048-3694

Rabanus-Wallace, M. Timothy, Hackauf, Bernd, Mascher, Martin, Lux, Thomas, Wicker, Thomas, Gundlach, Heidrun, Baez, Mariana, Houben, Andreas, Mayer, Klaus F.X., Guo, Liangliang, Poland, Jesse, Pozniak, Curtis J., Walkowiak, Sean, Melonek, Joanna, Praz, Coraline R., Schreiber, Mona, Budak, Hikmet, Heuberger, Matthias, Steuernagel, Burkhard, Wulff, Brande, Börner, Andreas, Byrns, Brook, Čížková, Jana, Fowler, D. Brian, Fritz, Allan, Himmelbach, Axel, Kaithakottil, Gemy, Keilwagen, Jens, Keller, Beat, Konkin, David, Larsen, Jamie, Li, Qiang, Myśków, Beata, Padmarasu, Sudharsan, Rawat, Nidhi, Sesiz, Uğur, Biyiklioglu-Kaya, Sezgi, Sharpe, Andy, Šimková, Hana, Small, Ian, Swarbreck, David, Toegelová, Helena, Tsvetkova, Natalia, Voylokov, Anatoly V., Vrána, Jan, Bauer, Eva, Bolibok-Bragoszewska, Hanna, Doležel, Jaroslav, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X, Jia, Jizeng, Korzun, Viktor, Laroche, André, Ma, Xue-Feng, Ordon, Frank, Özkan, Hakan, Rakoczy-Trojanowska, Monika, Scholz, Uwe, Schulman, Alan H., Siekmann, Dörthe, Stojałowski, Stefan, Tiwari, Vijay K., Spannagl, Manuel and Stein, Nils (2021) Chromosome-scale genome assembly provides insights into rye biology, evolution and agronomic potential. Nature Genetics, 53 (4). pp. 564-573. ISSN 1061-4036

Walkowiak, Sean, Gao, Liangliang, Monat, Cecile, Haberer, Georg, Kassa, Mulualem T., Brinton, Jemima, Ramirez-Gonzalez, Ricardo H., Kolodziej, Markus C., Delorean, Emily, Thambugala, Dinushika, Klymiuk, Valentyna, Byrns, Brook, Gundlach, Heidrun, Bandi, Venkat, Siri, Jorge Nunez, Nilsen, Kirby, Aquino, Catharine, Himmelbach, Axel, Copetti, Dario, Ban, Tomohiro, Venturini, Luca, Bevan, Michael, Clavijo, Bernardo, Koo, Dal-Hoe, Ens, Jennifer, Wiebe, Krystalee, N’diaye, Amidou, Fritz, Allen K., Gutwin, Carl, Fiebig, Anne, Fosker, Christine, Fu, Bin Xiao, Accinelli, Gonzalo Garcia, Gardner, Keith A., Fradgley, Nick, Gutierrez-Gonzalez, Juan, Halstead-Nussloch, Gwyneth, Hatakeyama, Masaomi, Koh, Chu Shin, Deek, Jasline, Costamagna, Alejandro C., Fobert, Pierre, Heavens, Darren, Kanamori, Hiroyuki, Kawaura, Kanako, Kobayashi, Fuminori, Krasileva, Ksenia, Kuo, Tony, McKenzie, Neil, Murata, Kazuki, Nabeka, Yusuke, Paape, Timothy, Padmarasu, Sudharsan, Percival-Alwyn, Lawrence, Kagale, Sateesh, Scholz, Uwe, Sese, Jun, Juliana, Philomin, Singh, Ravi, Shimizu-Inatsugi, Rie, Swarbreck, David, Cockram, James, Budak, Hikmet, Tameshige, Toshiaki, Tanaka, Tsuyoshi, Tsuji, Hiroyuki, Wright, Jonathan, Wu, Jianzhong, Steuernagel, Burkhard, Small, Ian, Cloutier, Sylvie, Keeble-Gagnère, Gabriel, Muehlbauer, Gary, Tibbets, Josquin, Nasuda, Shuhei, Melonek, Joanna, Hucl, Pierre J., Sharpe, Andrew G., Clark, Matthew, Legg, Erik, Bharti, Arvind, Langridge, Peter, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X, Uauy, Cristobal, Mascher, Martin, Krattinger, Simon G., Handa, Hirokazu, Shimizu, Kentaro K., Distelfeld, Assaf, Chalmers, Ken, Keller, Beat, Mayer, Klaus F. X., Poland, Jesse, Stein, Nils, Mccartney, Curt A., Spannagl, Manuel, Wicker, Thomas and Pozniak, Curtis J. (2020) Multiple wheat genomes reveal global variation in modern breeding. Nature, 588 (7837). pp. 277-283. ISSN 0028-0836

Lu, Fu-Hao, McKenzie, Neil, Gardiner, Laura-Jayne, Luo, Ming-Cheng, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and Bevan, Michael W. (2020) Reduced chromatin accessibility underlies gene expression differences in homologous chromosome arms of diploid Aegilops tauschii and hexaploid wheat. GigaScience, 9 (6). ISSN 2047-217X

Gardiner, Laura Jayne, Bansept-Basler, Pauline, El-Soda, Mohamed, Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and O'Sullivan, Donal M. (2020) A framework for gene mapping in wheat demonstrated using the Yr7 yellow rust resistance gene. PLoS One, 15 (4). ISSN 1932-6203

Parker, Matthew T., Knop, Katarzyna, Sherwood, Anna V., Schurch, Nicholas J., Mackinnon, Katarzyna, Gould, Peter D., Hall, Anthony J. W. ORCID: https://orcid.org/0000-0002-1806-020X, Barton, Geoffrey J. and Simpson, Gordon G. (2020) Nanopore direct RNA sequencing maps the complexity of arabidopsis mRNA processing and m6A modification. eLife, 9. ISSN 2050-084X

Greenwood, Mark, Domijan, Mirela, Gould, Peter D., Hall, Anthony J. W. ORCID: https://orcid.org/0000-0002-1806-020X and Locke, James C. W. (2019) Coordinated circadian timing through the integration of local inputs in Arabidopsis thaliana. PLoS Biology, 17 (8). ISSN 1544-9173

Gardiner, Laura Jayne, Wingen, Luzie U., Bailey, Paul, Joynson, Ryan, Brabbs, Thomas, Wright, Jonathan, Higgins, James D., Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, Griffiths, Simon, Clavijo, Bernardo J. and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2019) Analysis of the recombination landscape of hexaploid bread wheat reveals genes controlling recombination and gene conversion frequency. Genome Biology, 20 (1). ISSN 1474-760X

Gardiner, Laura-Jayne, Brabbs, Thomas, Akhunov, Alina, Jordan, Katherine, Budak, Hikmet, Richmond, Todd, Singh, Sukhwinder, Catchpole, Leah, Akhunov, Eduard and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2019) Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat. GigaScience, 8 (4). ISSN 2047-217X

Gardiner, Laura-Jayne, Joynson, Ryan, Omony, Jimmy, Rusholme-Pilcher, Rachel, Olohan, Lisa, Lang, Daniel, Bai, Caihong, Hawkesford, Malcolm, Salt, David, Spannagl, Manuel, Mayer, Klaus F.X., Kenny, John, Bevan, Michael, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2018) Hidden variation in polyploid wheat drives local adaptation. Genome Research, 28 (9). pp. 1319-1332. ISSN 1088-9051

Singh, Sukhwinder, Vikram, Prashant, Sehgal, Deepmala, Burgueño, Juan, Sharma, Achla, Singh, Sanjay K., Sansaloni, Carolina P., Joynson, Ryan, Brabbs, Thomas, Ortiz, Cynthia, Solis-Moya, Ernesto, Govindan, Velu, Gupta, Naveen, Sidhu, Harminder S., Basandrai, Ashwani K., Basandrai, Daisy, Ledesma-Ramires, Lourdes, Suaste-Franco, Maria P., Fuentes-Dávila, Guillermo, Moreno, Javier I., Sonder, Kai, Singh, Vaibhav K., Singh, Sanjay, Shokat, Sajid, Arif, Mian A. R., Laghari, Khalil A., Srivastava, Puja, Bhavani, Sridhar, Kumar, Satish, Pal, Dharam, Jaiswal, Jai P., Kumar, Uttam, Chaudhary, Harinder K., Crossa, Jose, Payne, Thomas S., Imtiaz, Muhammad, Sohu, Virinder S., Singh, Gyanendra P., Bains, Navtej S., Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X and Pixley, Kevin V. (2018) Harnessing genetic potential of wheat germplasm banks through impact-oriented-prebreeding for future food and nutritional security. Scientific Reports, 8. ISSN 2045-2322

Gould, Peter D., Domijan, Mirela, Greenwood, Mark, Tokuda, Isao T., Rees, Hannah, Kozma-Bognar, Laszlo, Hall, Anthony J. W. ORCID: https://orcid.org/0000-0002-1806-020X and Locke, James C. W. (2018) Coordination of robust single cell rhythms in the Arabidopsis circadian clock via spatial waves of gene expression. eLife, 7. ISSN 2050-084X

Olohan, Lisa, Gardiner, Laura-Jayne, Lucaci, Anita, Steuernagel, Burkhard, Wulff, Brande, Kenny, John, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2018) A modified sequence capture approach allowing standard and methylation analyses of the same enriched genomic DNA sample. BMC Genomics, 19. ISSN 1471-2164

Gardiner, Laura-Jayne, Bansept-Basler, Pauline, Olohan, Lisa, Joynson, Ryan, Brenchley, Rachel, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009, O'Sullivan, Donal M. and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2016) Mapping-by-sequencing in complex polyploid genomes using genic sequence capture: a case study to map yellow rust resistance in hexaploid wheat. The Plant Journal, 87 (4). pp. 403-419. ISSN 0960-7412

Gardiner, Laura-Jayne, Quinton-Tulloch, Mark, Olohan, Lisa, Price, Jonathan, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2015) A genome-wide survey of DNA methylation in hexaploid wheat. Genome Biology, 16. ISSN 1474-760X

Gardiner, Laura‐jayne, Gawroński, Piotr, Olohan, Lisa, Schnurbusch, Thorsten, Hall, Neil ORCID: https://orcid.org/0000-0003-2808-0009 and Hall, Anthony ORCID: https://orcid.org/0000-0002-1806-020X (2014) Using genic sequence capture in combination with a syntenic pseudo genome to map a deletion mutant in a wheat species. The Plant Journal, 80 (5). pp. 895-904. ISSN 0960-7412

Book Section

Greenwood, Mark, Hall, Anthony J.W. ORCID: https://orcid.org/0000-0002-1806-020X and Locke, James C.W. (2022) High Spatial Resolution Luciferase Imaging of the Arabidopsis thaliana Circadian Clock. In: Plant Circadian Networks. Methods in Molecular Biology (2). Humana Press Inc, pp. 47-55. ISBN 978-1-0716-1911-7