A toolkit for analysing large-scale plant small RNA datasets

Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, MacLean, Dan, Studholme, David J. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

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Abstract

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

Item Type:	Article
Faculty \ School:	Faculty of Science > School of Biological Sciences Faculty of Science > School of Computing Sciences
UEA Research Groups:	Faculty of Science > Research Groups > Computational Biology > Computational biology of RNA (former - to 2018) Faculty of Science > Research Groups > Computational Biology > Phylogenetics (former - to 2018) Faculty of Science > Research Groups > Plant Sciences Faculty of Science > Research Groups > Computational Biology Faculty of Science > Research Groups > Norwich Epidemiology Centre Faculty of Medicine and Health Sciences > Research Groups > Norwich Epidemiology Centre
Depositing User:	EPrints Services
Date Deposited:	01 Oct 2010 13:36
Last Modified:	24 Sep 2024 09:34
URI:	https://ueaeprints.uea.ac.uk/id/eprint/144
DOI:	10.1093/bioinformatics/btn428

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