Items where Research Group is "Phylogenetics (former - to 2018)

Bastkowski, Sarah, Mapleson, Daniel, Spillner, Andreas, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Balvočiūtė, Monika and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) SPECTRE: a Suite of PhylogEnetiC Tools for Reticulate Evolution. Bioinformatics, 34 (6). 1056–1057. ISSN 1367-4803

Bordewich, Magnus, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2018) Recovering normal networks from shortest inter-taxa distance information. Journal of Mathematical Biology, 77 (3). 571–594. ISSN 0303-6812

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2018) Reconstructing the History of Syntenies Through Super-Reconciliation. In: Comparative Genomics. Lecture Notes in Computer Science, 11183 . Springer, pp. 179-195. ISBN 978-3-030-00833-8

Francis, Andrew, Huber, Katharina and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Tree-based unrooted phylogenetic networks. Bulletin of Mathematical Biology, 80 (2). 404–416. ISSN 0092-8240

Francis, Andrew, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Bounds for phylogenetic network space metrics. Journal of Mathematical Biology, 76 (5). 1229–1248. ISSN 0303-6812

Francis, Andrew and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Identifiability of tree-child phylogenetic networks under a probabilistic recombination-mutation model of evolution. Journal of Theoretical Biology, 446. pp. 160-167. ISSN 0022-5193

Grunewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2018) Combinatorial properties of triplet covers for binary trees. Advances in Applied Mathematics, 99. pp. 59-82. ISSN 0196-8858

Huber, Katharina and Scholz, Guillaume (2018) Beyond representing orthology relations by trees. Algorithmica, 80 (1). 73–103. ISSN 0178-4617

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Sagot, Marie-France and Sinaimeri, Blerina (2018) Geometric medians in reconciliation spaces of phylogenetic trees. Information Processing Letters, 136. pp. 96-101. ISSN 0020-0190

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Semple, Charles and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Quarnet inference rules for level-1 networks. Bulletin of Mathematical Biology, 80 (8). 2137–2153. ISSN 0092-8240

Kelk, Steven, Stamoulis, Georgios and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) Treewidth distance on phylogenetic trees. Theoretical Computer Science, 731. pp. 99-117. ISSN 0304-3975

Luca, Bogdan-Alexandru, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794, Edwards, Dylan R. ORCID: https://orcid.org/0000-0002-3292-2064, Edward, Sandra, Whitaker, Hayley C., Merson, Sue, Denis, Nening, Cooper, Rosalin A., Hazell, Steven, Warren, Anne Y., Eeles, Rosalind, Lynch, Andy G., Ross-Adams, Helen, Lamb, Alastair D., Neal, David E., Sethia, Krishna, Mills, Robert D, Ball, Richard Y., Curley, Helen, Clark, Jeremy, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 and The CancerMap Group (2018) DESNT: a poor prognosis category of human prostate cancer. European Urology Focus, 4 (6). pp. 842-850. ISSN 2405-4569

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Spillner, Andreas and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2018) UPGMA and the normalized equidistant minimum evolution problem. Theoretical Computer Science, 721. pp. 1-15. ISSN 0304-3975

Stocks, Matthew B., Mohorianu, Irina, Beckers, Matthew, Paicu, Claudia, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Thody, Joshua, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) The UEA sRNA Workbench (version 4.4): a comprehensive suite of tools for analyzing miRNAs and sRNAs. Bioinformatics, 34 (19). 3382–3384. ISSN 1367-4803

Thody, Joshua, Folkes, Leighton, Medina-Calzada, Zahara, Xu, Ping, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) PAREsnip2: A tool for high-throughput prediction of small RNA targets from degradome sequencing data using configurable targeting rules. Nucleic Acids Research, 46 (17). 8730–8739. ISSN 0305-1048

van Iersel, Leo and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2018) Leaf-reconstructibility of phylogenetic networks. SIAM Journal on Discrete Mathematics, 32 (3). 2047–2066. ISSN 0895-4801