Items where Research Group is "Phylogenetics (former - to 2018)

Article

Byrka, Jaroslaw, Gawrychowski, Pawel, Huber, Katharina T. and Kelk, Steven (2010) Worst-case optimal approximation algorithms for maximizing triplet consistency within phylogenetic networks. Journal of Discrete Algorithms, 8 (1). pp. 65-75. ISSN 1570-8667

Cameron, Peter J. and Wu, Taoyang (2010) The complexity of the weight problem for permutation and matrix groups. Discrete Mathematics, 310 (3). pp. 408-416. ISSN 1872-681X

Dress, Andreas, Moulton, Vincent, Steel, Mike and Wu, Taoyang (2010) Species, clusters and the ‘Tree of life’: A graph-theoretic perspective. Journal of Theoretical Biology, 265 (4). pp. 535-542.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus, Moulton, Vincent and Spillner, Andreas (2010) An algorithm for computing cutpoints in finite metric spaces. Journal of Classification, 27 (2). pp. 158-172.

Dress, Andreas W. M., Wu, Taoyang and Xu, XiaoMing (2010) A note on single-linkage equivalence. Applied Mathematics Letters, 23 (4). pp. 432-435.

Huber, Katharina T., van Iersel, Leo, Kelk, Steven and Suchecki, Radosław (2010) A practical algorithm for reconstructing level-1 phylogenetic networks. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 8 (3). pp. 635-649. ISSN 1557-9964

MacLean, Daniel, Moulton, Vincent and Studholme, David J. (2010) Finding sRNA generative locales from high-throughput sequencing data with NiBLS. BMC Bioinformatics, 11. ISSN 1471-2105

Martin, Darren P., Lemey, Philippe, Lott, Martin, Moulton, Vincent, Posada, David and Lefeuvre, Pierre (2010) RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics, 26 (19). pp. 2462-2463. ISSN 1367-4803

Nguyen, Binh, Spillner, Andreas, Emerson, Brent C. and Moulton, Vincent (2010) Distinguishing between hot-spots and melting-pots of genetic diversity using haplotype connectivity. Algorithms for Molecular Biology, 5. ISSN 1748-7188

Nicolas, Francisco Esteban, Moxon, Simon, de Haro, Juan P., Calo, Silvia, Grigoriev, Igor V., Torres-Martinez, Santiago, Moulton, Vincent, Ruiz-Vazquez, Rosa M. and Dalmay, Tamas (2010) Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides. Nucleic Acids Research, 38 (16). pp. 5535-5541. ISSN 0305-1048

Pantaleo, Vitantonio, Szittya, György, Moxon, Simon, Miozzi, Laura, Moulton, Vincent, Dalmay, Tamas and Burgyan, Jozsef (2010) Identification of grapevine microRNAs and their targets using high throughput sequencing and degradome analysis. The Plant Journal, 62 (6). pp. 960-976. ISSN 1365-313X

Szittya, Gyorgy, Moxon, Simon, Pantaleo, Vitantonio, Toth, Gabor, Rusholme Pilcher, Rachel L., Moulton, Vincent, Burgyan, Jozsef and Dalmay, Tamas (2010) Structural and functional analysis of viral siRNAs. PLoS Pathogens, 6 (4). ISSN 1553-7374

Book Section

Pais, H, Moxon, S, Dalmay, T and Moulton, V (2010) Small RNA Discovery and Characterisation in Eukaryotes Using High-Throughput Approaches. In: Non-coding RNA networks. Landes Bioscience. ISBN 978-1-4614-0331-9