Items where Research Group is "Computational biology of RNA (former - to 2018)

Article

Choe, Y., Koolen, J., Huber, K. T., Moulton, V. and Won, Y. (2008) Counting vertices and cubes in median graphs associated to circular split systems. European Journal of Combinatorics, 29 (2). pp. 443-456.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent (2008) Block realizations of finite metrics and the tight-span construction I: The embedding theorem. Applied Mathematics Letters (2). pp. 1306-1309.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent (2008) Compatible decompositions and block realizations of finite metrics. European Journal of Combinatorics, 29 (7). pp. 1617-1633.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent (2008) Cut points in metric spaces. Applied Mathematics Letters, 21 (6). pp. 545-548.

Gill, Jonna, Linusson, Svante, Moulton, Vincent and Steel, Mike (2008) A regular decomposition of the edge-product space of phylogenetic trees. Advances in Applied Mathematics, 41 (2). pp. 158-176. ISSN 0196-8858

Grünewald, Stefan, Huber, Katharina T., Moulton, Vincent and Semple, Charles (2008) Encoding phylogenetic trees in terms of weighted quartets. Journal of Mathematical Biology, 56 (4). pp. 465-477. ISSN 0303-6812

Holland, Barbara R., Benthin, Steffi, Lockhart, Peter J., Moulton, Vincent and Huber, Katharina T. (2008) Using supernetworks to distinguish hybridization from lineage-sorting. BMC Evolutionary Biology, 8. ISSN 1471-2148

Huber, Katharina T., Koolen, Jacobus, Moulton, Vincent and Spillner, Andreas (2008) Characterizing cell-decomposable metrics. Electronic Journal of Combinatorics, 15 (1). ISSN 1077-8926

Huber, Katharina T., Lott, Martin, Moulton, Vincent and Spillner, Andreas (2008) The complexity of deriving multi-labeled trees from bipartitions. Journal of Computational Biology, 15 (6). pp. 639-651. ISSN 1557-8666

Moxon, Simon, Jing, Runchan, Szittya, Gyorgy, Schwach, Frank, Rusholme Pilcher, Rachel L., Moulton, Vincent and Dalmay, Tamas (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Moxon, Simon, Moulton, Vincent and Kim, Jan T. (2008) A scoring matrix approach to detecting miRNA target sites. Algorithms for Molecular Biology, 3 (3). ISSN 1748-7188

Moxon, Simon, Schwach, Frank, Dalmay, Tamas, MacLean, Dan, Studholme, David J. and Moulton, Vincent (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Nicolas Molina, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent and Dalmay, Tamas (2008) Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140. RNA, 14. pp. 2513-2520. ISSN 1469-9001

Spillner, Andreas, Nguyen, Binh T. and Moulton, Vincent (2008) Computing phylogenetic diversity for split systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5 (2). pp. 235-244. ISSN 1545-5963

Szittya, György, Moxon, Simon, Santos, Dulce M., Jing, Runchan, Fevereiro, Manuel P. S., Moulton, Vincent and Dalmay, Tamas (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9. ISSN 1471-2164

Wu, Qiong, James, Steve A., Roberts, Ian N., Moulton, Vincent and Huber, Katharina T (2008) Exploring contradictory phylogenetic relationships in yeasts. FEMS Yeast Research, 8 (4). pp. 641-650. ISSN 1567-1364

Book Section

Stocks, Matthew and Laycock, S.D. (2008) A Haptic Rendering Algorithm for Molecular Interaction. In: Proceedings of the First Eurographics Conference on Visual Computing for Biomedicine. UNSPECIFIED, NLD, pp. 37-44.