Items where Research Group is "Computational Biology

Article

Araujo-Granda, Pablo, Gras, Anna, Ginovart, Marta and Moulton, Vincent (2020) INDISIM-Denitrification, an individual-based model for study the denitrification process. Journal of Industrial Microbiology and Biotechnology, 47. pp. 1-20. ISSN 1367-5435

Choi, Kwok Pui, Thompson, Ariadne and Wu, Taoyang (2020) On cherry and pitchfork distributions of random rooted and unrooted phylogenetic trees. Theoretical Population Biology, 132. pp. 92-104. ISSN 0040-5809

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2020) Evolution through segmental duplications and losses: A super-reconciliation approach. Algorithms for Molecular Biology, 15 (1). ISSN 1748-7188

Greenman, Chris D. (2020) Duality relations between spatial birth-death processes and diffusions in Hilbert space. Journal of Physics A: Mathematical and Theoretical, 53 (44). ISSN 1751-8113

Greenman, Christopher, Wu, Taoyang and Penso Dolfin, Luca (2020) The complexity of genome rearrangement combinatorics under the infinite sites model. Journal of Theoretical Biology, 501. ISSN 0022-5193

Hayamizu, Momoko, Huber, Katharina, Moulton, Vincent and Murakami, Yukihiro (2020) Recognizing and realizing cactus metrics. Information Processing Letters, 157. ISSN 0020-0190

Huber, Katharina and Scholz, Guillaume E. (2020) Phylogenetic networks that are their own fold-ups. Advances in Applied Mathematics, 113. ISSN 0196-8858

Iakovou, Georgios, Alhazzazi, Mousa, Hayward, Steven and Laycock, Stephen D. (2020) DockIT: A tool for interactive molecular docking and molecular complex construction. Bioinformatics, 36 (24). 5698–5700. ISSN 1367-4803

Luca, Bogdan, Moulton, Vincent, Ellis, Christopher, Connell, Shea P., Brewer, Daniel and Cooper, Colin (2020) Convergence of prognostic gene signatures suggests underlying mechanisms of human prostate cancer progression. Genes, 11 (7). ISSN 2073-4425

Luca, Bogdan, Moulton, Vincent, Ellis, Christopher, Edwards, Dylan R., Campbell, Colin, Cooper, Rosalin A., Clark, Jeremy, Brewer, Daniel S. and Cooper, Colin S. (2020) A novel stratification framework for predicting outcome in patients with prostate cancer. British Journal of Cancer, 122 (10). 1467–1476. ISSN 0007-0920

Thody, Joshua, Folkes, Leighton and Moulton, Vincent (2020) NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs. Nucleic Acids Research, 48 (12). 6481–6490. ISSN 0305-1048

Thody, Joshua, Moulton, Vincent and Mohorianu, Irina (2020) PAREameters: a tool for computational inference of plant miRNA–mRNA targeting rules using small RNA and degradome sequencing data. Nucleic Acids Research, 48 (5). 2258–2270. ISSN 0305-1048

Thor, Kathrin, Jiang, Shushu, Michard, Erwan, George, Jeoffrey, Scherzer, Sönke, Huang, Shouguang, Dindas, Julian, Derbyshire, Paul, Leitão, Nuno, Defalco, Thomas A., Köster, Philipp, Hunter, Kerri, Kimura, Sachie, Gronnier, Julien, Stransfeld, Lena, Kadota, Yasuhiro, Bücherl, Christoph A., Charpentier, Myriam, Wrzaczek, Michael, Maclean, Daniel, Oldroyd, Giles E. D., Menke, Frank L. H., Roelfsema, M. Rob G., Hedrich, Rainer, Feijó, José and Zipfel, Cyril (2020) The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature, 585 (7826). 569–573. ISSN 0028-0836

Veevers, Ruth, Cawley, Gavin and Hayward, Steven (2020) Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression. BMC Bioinformatics, 21. ISSN 1471-2105

Xia, Mingtao, Greenman, Chris D. and Chou, Tom (2020) PDE models of adder mechanisms in cellular proliferation. SIAM Journal on Applied Mathematics (SIAP), 80 (3). 1307–1335. ISSN 0036-1399

van Iersel, Leo, Moulton, Vincent and Murakami, Yuki (2020) Reconstructibility of unrooted level-k phylogenetic networks from distances. Advances in Applied Mathematics, 120. ISSN 0196-8858

Book Section

Alhazzazi, Mousa, Hayward, Steven and Laycock, Stephen D. (2020) GPU-Accelerated Generation of the Molecular Surface. In: Eurographics Conference. UNSPECIFIED.