Items where Research Group is "Computational Biology

A

Alhazzazi, Mousa ORCID: https://orcid.org/0000-0001-7451-2509, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen D. (2020) GPU-Accelerated Generation of the Molecular Surface. In: Eurographics Conference. UNSPECIFIED.

Araujo-Granda, Pablo, Gras, Anna, Ginovart, Marta and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2020) INDISIM-Denitrification, an individual-based model for study the denitrification process. Journal of Industrial Microbiology and Biotechnology, 47. pp. 1-20. ISSN 1367-5435

C

Choi, Kwok Pui, Thompson, Ariadne and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2020) On cherry and pitchfork distributions of random rooted and unrooted phylogenetic trees. Theoretical Population Biology, 132. pp. 92-104. ISSN 0040-5809

D

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2020) Evolution through segmental duplications and losses: A super-reconciliation approach. Algorithms for Molecular Biology, 15 (1). ISSN 1748-7188

G

Greenman, Chris D. (2020) Duality relations between spatial birth-death processes and diffusions in Hilbert space. Journal of Physics A: Mathematical and Theoretical, 53 (44). ISSN 1751-8113

Greenman, Christopher, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Penso Dolfin, Luca (2020) The complexity of genome rearrangement combinatorics under the infinite sites model. Journal of Theoretical Biology, 501. ISSN 0022-5193

H

Hayamizu, Momoko, Huber, Katharina, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yukihiro (2020) Recognizing and realizing cactus metrics. Information Processing Letters, 157. ISSN 0020-0190

Huber, Katharina and Scholz, Guillaume E. (2020) Phylogenetic networks that are their own fold-ups. Advances in Applied Mathematics, 113. ISSN 0196-8858

I

Iakovou, Georgios, Alhazzazi, Mousa ORCID: https://orcid.org/0000-0001-7451-2509, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen D. (2020) DockIT: A tool for interactive molecular docking and molecular complex construction. Bioinformatics, 36 (24). 5698–5700. ISSN 1367-4803

L

Luca, Bogdan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Ellis, Christopher, Connell, Shea P., Brewer, Daniel ORCID: https://orcid.org/0000-0003-4753-9794 and Cooper, Colin ORCID: https://orcid.org/0000-0003-2013-8042 (2020) Convergence of prognostic gene signatures suggests underlying mechanisms of human prostate cancer progression. Genes, 11 (7). ISSN 2073-4425

Luca, Bogdan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Ellis, Christopher, Edwards, Dylan R. ORCID: https://orcid.org/0000-0002-3292-2064, Campbell, Colin, Cooper, Rosalin A., Clark, Jeremy, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794 and Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 (2020) A novel stratification framework for predicting outcome in patients with prostate cancer. British Journal of Cancer, 122 (10). 1467–1476. ISSN 0007-0920

T

Thody, Joshua, Folkes, Leighton and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2020) NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs. Nucleic Acids Research, 48 (12). 6481–6490. ISSN 0305-1048

Thody, Joshua, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Mohorianu, Irina (2020) PAREameters: a tool for computational inference of plant miRNA–mRNA targeting rules using small RNA and degradome sequencing data. Nucleic Acids Research, 48 (5). 2258–2270. ISSN 0305-1048

V

Veevers, Ruth, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095 and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2020) Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression. BMC Bioinformatics, 21. ISSN 1471-2105

van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yuki (2020) Reconstructibility of unrooted level-k phylogenetic networks from distances. Advances in Applied Mathematics, 120. ISSN 0196-8858

X

Xia, Mingtao, Greenman, Chris D. and Chou, Tom (2020) PDE models of adder mechanisms in cellular proliferation. SIAM Journal on Applied Mathematics (SIAP), 80 (3). 1307–1335. ISSN 0036-1399