Items where Research Group is "Computational Biology

A

Alhazzazi, Mousa, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen D. (2020) GPU-Accelerated Generation of the Molecular Surface. In: Eurographics Conference. UNSPECIFIED.

Araujo-Granda, Pablo, Gras, Anna, Ginovart, Marta and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2020) INDISIM-Denitrification, an individual-based model for study the denitrification process. Journal of Industrial Microbiology and Biotechnology, 47. pp. 1-20. ISSN 1367-5435

C

Choi, Kwok Pui, Thompson, Ariadne and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2020) On cherry and pitchfork distributions of random rooted and unrooted phylogenetic trees. Theoretical Population Biology, 132. pp. 92-104. ISSN 0040-5809

D

Delabre, Matteo, El-Mabrouk, Nadia, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Lafond, Manuel, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Noutahi, Emmanuel and Sautie Castellanos, Miguel (2020) Evolution through segmental duplications and losses: A super-reconciliation approach. Algorithms for Molecular Biology, 15 (1). ISSN 1748-7188

G

Greenman, Chris D. (2020) Duality relations between spatial birth-death processes and diffusions in Hilbert space. Journal of Physics A: Mathematical and Theoretical, 53 (44). ISSN 1751-8113

Greenman, Christopher, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 and Penso Dolfin, Luca (2020) The complexity of genome rearrangement combinatorics under the infinite sites model. Journal of Theoretical Biology, 501. ISSN 0022-5193

H

Hayamizu, Momoko, Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yukihiro (2020) Recognizing and realizing cactus metrics. Information Processing Letters, 157. ISSN 0020-0190

Huber, Katharina ORCID: https://orcid.org/0000-0002-6368-7511 and Scholz, Guillaume E. (2020) Phylogenetic networks that are their own fold-ups. Advances in Applied Mathematics, 113. ISSN 0196-8858

I

Iakovou, Georgios, Alhazzazi, Mousa, Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Laycock, Stephen D. (2020) DockIT: A tool for interactive molecular docking and molecular complex construction. Bioinformatics, 36 (24). 5698–5700. ISSN 1367-4803

L

Luca, Bogdan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Ellis, Christopher, Connell, Shea P., Brewer, Daniel ORCID: https://orcid.org/0000-0003-4753-9794 and Cooper, Colin ORCID: https://orcid.org/0000-0003-2013-8042 (2020) Convergence of prognostic gene signatures suggests underlying mechanisms of human prostate cancer progression. Genes, 11 (7). ISSN 2073-4425

Luca, Bogdan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Ellis, Christopher, Edwards, Dylan R. ORCID: https://orcid.org/0000-0002-3292-2064, Campbell, Colin, Cooper, Rosalin A., Clark, Jeremy, Brewer, Daniel S. ORCID: https://orcid.org/0000-0003-4753-9794 and Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042 (2020) A novel stratification framework for predicting outcome in patients with prostate cancer. British Journal of Cancer, 122 (10). 1467–1476. ISSN 0007-0920

S

Shabana, Z., Michalak, A., Grove, V., Laycock, S., Johannsen, L. and Lazar, A. S. (2020) Effects of sleep loss and time of day on postural control:a randomized controlled sleep deprivation versus multi-nap study in healthy older men and women. Journal of Sleep Research, 29. p. 235. ISSN 0962-1105

T

Thody, Joshua, Folkes, Leighton and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2020) NATpare: a pipeline for high-throughput prediction and functional analysis of nat-siRNAs. Nucleic Acids Research, 48 (12). 6481–6490. ISSN 0305-1048

Thody, Joshua, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Mohorianu, Irina (2020) PAREameters: a tool for computational inference of plant miRNA–mRNA targeting rules using small RNA and degradome sequencing data. Nucleic Acids Research, 48 (5). 2258–2270. ISSN 0305-1048

Thor, Kathrin, Jiang, Shushu, Michard, Erwan, George, Jeoffrey, Scherzer, Sönke, Huang, Shouguang, Dindas, Julian, Derbyshire, Paul, Leitão, Nuno, Defalco, Thomas A., Köster, Philipp, Hunter, Kerri, Kimura, Sachie, Gronnier, Julien, Stransfeld, Lena, Kadota, Yasuhiro, Bücherl, Christoph A., Charpentier, Myriam, Wrzaczek, Michael, Maclean, Daniel ORCID: https://orcid.org/0000-0003-1032-0887, Oldroyd, Giles E. D., Menke, Frank L. H. ORCID: https://orcid.org/0000-0003-2490-4824, Roelfsema, M. Rob G., Hedrich, Rainer, Feijó, José and Zipfel, Cyril (2020) The calcium-permeable channel OSCA1.3 regulates plant stomatal immunity. Nature, 585 (7826). 569–573. ISSN 0028-0836

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Veevers, Ruth, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095 and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2020) Investigation of sequence features of hinge-bending regions in proteins with domain movements using kernel logistic regression. BMC Bioinformatics, 21. ISSN 1471-2105

van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Murakami, Yuki (2020) Reconstructibility of unrooted level-k phylogenetic networks from distances. Advances in Applied Mathematics, 120. ISSN 0196-8858

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Xia, Mingtao, Greenman, Chris D. and Chou, Tom (2020) PDE models of adder mechanisms in cellular proliferation. SIAM Journal on Applied Mathematics (SIAP), 80 (3). 1307–1335. ISSN 0036-1399