Items where Research Group is "Computational Biology

Article

Baroni, Mihaela, Grünewald, Stefan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2005) Bounding the number of hybridisation events for a consistent evolutionary history. Journal of Mathematical Biology, 51 (2). pp. 171-182. ISSN 0303-6812

Bordewich, Magnus, Huber, Katharina T. and Semple, Charles (2005) Identifying phylogenetic trees. Discrete Mathematics, 300 (1-3). pp. 30-43. ISSN 0012-365X

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2005) Constructing Bayesian formulations of sparse kernel learning methods. Neural Networks, 18 (5-6). pp. 674-683. ISSN 0893-6080

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2005) The evidence framework applied to sparse kernel logistic regression. Neurocomputing, 64. pp. 119-135. ISSN 0925-2312

Cox, Charles, Bignell, Graham, Greenman, Chris, Stabenau, Arne, Warren, William, Stephens, Philip, Davies, Helen, Watt, Stephen, Teague, Jon, Edkins, Sara, Birney, Ewan, Easton, Douglas F., Wooster, Richard, Futreal, P. Andrew and Stratton, Michael R. (2005) A survey of homozygous deletions in human cancer genomes. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 102 (12). pp. 4542-4547. ISSN 0027-8424

Davies, Helen, Hunter, Chris, Smith, Raffaella, Stephens, Philip, Greenman, Christopher, Bignell, Graham, Teague, Jon, Butler, Adam, Edkins, Sarah, Stevens, Claire, Parker, Adrian, O'Meara, Sarah, Avis, Tim, Barthorpe, Syd, Brackenbury, Lisa, Buck, Gemma, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S ORCID: https://orcid.org/0000-0003-2013-8042, Flanagan, Adrienne M, Green, Anthony, Knowles, Maggie, Leung, Suet Y, Looijenga, Leendert H J, Malkowicz, Bruce, Pierotti, Marco A, Teh, Bin T, Yuen, Siu T, Lakhani, Sunil R, Easton, Douglas F, Weber, Barbara L, Goldstraw, Peter, Nicholson, Andrew G, Wooster, Richard, Stratton, Michael R and Futreal, P Andrew (2005) Somatic mutations of the protein kinase gene family in human lung cancer. Cancer Research, 65 (17). pp. 7591-5. ISSN 0008-5472

Dress, A., Holland, B., Huber, K. T., Koolen, J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Weyer-Menkoff, J. (2005) Delta- additive and Delta-ultra-additive maps, Gromov's trees and the Farris transform. Discrete Applied Mathematics, 146 (1). pp. 51-73. ISSN 0166-218X

Dress, Andreas W. M., Koolen, Jack and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) 4n-10. Annals of Combinatorics, 8 (4). pp. 463-471. ISSN 0218-0006

Freyhult, E., Gardner, P. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) A comparison of RNA folding measures. BMC Bioinformatics, 6. ISSN 1471-2105

Freyhult, Eva, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Gardner, Paul (2005) Predicting RNA structure using mutual information. Applied Bioinformatics, 4 (1). pp. 53-59. ISSN 1175-5636

Freyhult, Eva, Prusis, Peteris, Lapinsh, Maris, Wikberg, Jarl E. S., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Gustafsson, Mats G. (2005) Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. BMC Bioinformatics, 6. ISSN 1471-2105

Holland, B., Huber, K.T., Penny, D. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The MinMax Squeeze: Guaranteeing a minimal tree for population data. Molecular Biology and Evolution, 22 (2). pp. 235-242. ISSN 0737-4038

Holland, Barbara R., Delsuc, Frédéric and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Visualizing conflicting evolutionary hypotheses in large collections of trees: Using consensus networks to study the origins of placentals and hexapods. Systematic Biology, 54 (1). pp. 66-76. ISSN 1063-5157

Huber, K. T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The tight span of an antipodal metric space: Part 1 - Combinatorial properties. Discrete Mathematics, 303 (1-3). pp. 65-79. ISSN 0012-365X

Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Steel, M. (2005) Recovering a phylogenetic tree using pairwise closure operations. Applied Mathematics Letters, 18 (3). pp. 361-366. ISSN 0893-9659

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2005) Four characters suffice to convexly define a phylogenetic tree. SIAM Journal on Discrete Mathematics, 18 (4). pp. 835-843. ISSN 0895-4801

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Tracking down noncoding RNAs. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 102 (7). pp. 2269-2270. ISSN 1091-6490

Qi, Guoying, Lee, Richard and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2005) A comprehensive and non-redundant database of protein domain movements. Bioinformatics, 21 (12). pp. 2832-2838. ISSN 1460-2059

Steil, Jochen J., Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Villmann, Thomas (2005) Trends in Neurocomputing at ESANN 2004. Neurocomputing, 64. pp. 1-4.

Stephens, Philip, Edkins, Sarah, Davies, Helen, Greenman, Christopher, Cox, Charles, Hunter, Chris, Bignell, Graham, Teague, Jon, Smith, Raffaella, Stevens, Claire, O'Meara, Sarah, Parker, Adrian, Tarpey, Patrick, Avis, Tim, Barthorpe, Andy, Brackenbury, Lisa, Buck, Gemma, Butler, Adam, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S ORCID: https://orcid.org/0000-0003-2013-8042, Flanagan, Adrienne M, Green, Anthony, Knowles, Maggie, Leung, Suet Y, Looijenga, Leendert H J, Malkowicz, Bruce, Pierotti, Marco A, Teh, Bin, Yuen, Siu T, Nicholson, Andrew G, Lakhani, Sunil, Easton, Douglas F, Weber, Barbara L, Stratton, Michael R, Futreal, P Andrew and Wooster, Richard (2005) A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer. Nature Genetics, 37 (6). pp. 590-592. ISSN 1061-4036

Winkworth, Richard C., Bryant, David, Lockhart, Peter J., Havell, David and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Biogeographic interpretation of split graphs: Least squares optimization of edge lengths. Systematic Biology, 54 (1). pp. 56-65. ISSN 1063-5157

Book Section

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Phylogenetic networks. In: Mathematics of Evolution and Phylogeny. Oxford University Press, pp. 178-200. ISBN 978-0-19-856610-6

Kim, J. T. (2005) Effects of Spatial Growth on Gene Expression Dynamics and on Regulatory Network Reconstruction. In: Advances in Artificial Life. Lecture Notes in Computer Science, 3630 . Springer, pp. 825-834. ISBN 978-3-540-28848-0

Tucker, Warwick and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Reconstructing metabolic networks using interval analysis. In: Algorithms in Bioinformatics. Lecture Notes in Computer Science, 3692 . Springer Berlin / Heidelberg, pp. 192-203. ISBN 978-3-540-29008-7

Conference or Workshop Item

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2005) A simple trick for constructing Bayesian formulations of sparse kernel learning methods. In: 2005 International Joint Conference on Neural Networks, 2005-07-31 - 2005-08-04.

Lee, K. K., Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Bevan, M. W. (2005) Sparse Bayesian promoter based gene classification. In: European Symposium on Artificial Neural Networks, 2005-04-27 - 2005-04-29.

Saadi, K., Lee, Kee-Khoon, Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Bevan, M. W. (2005) Predicting sugar regulation in Arabidopsis thaliana using kernel learning methods. In: 2005 International Joint Conference on Neural Networks, 2005-07-31 - 2005-08-04.