Items where Research Group is "Computational Biology

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Baroni, Mihaela, Grünewald, Stefan, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2005) Bounding the number of hybridisation events for a consistent evolutionary history. Journal of Mathematical Biology, 51 (2). pp. 171-182. ISSN 0303-6812

Bordewich, Magnus, Huber, Katharina T. and Semple, Charles (2005) Identifying phylogenetic trees. Discrete Mathematics, 300 (1-3). pp. 30-43. ISSN 0012-365X

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Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2005) Constructing Bayesian formulations of sparse kernel learning methods. Neural Networks, 18 (5-6). pp. 674-683. ISSN 0893-6080

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2005) The evidence framework applied to sparse kernel logistic regression. Neurocomputing, 64. pp. 119-135. ISSN 0925-2312

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2005) A simple trick for constructing Bayesian formulations of sparse kernel learning methods. In: 2005 International Joint Conference on Neural Networks, 2005-07-31 - 2005-08-04.

Cox, Charles, Bignell, Graham, Greenman, Chris, Stabenau, Arne, Warren, William, Stephens, Philip, Davies, Helen, Watt, Stephen, Teague, Jon, Edkins, Sara, Birney, Ewan, Easton, Douglas F., Wooster, Richard, Futreal, P. Andrew and Stratton, Michael R. (2005) A survey of homozygous deletions in human cancer genomes. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 102 (12). pp. 4542-4547. ISSN 0027-8424

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Davies, Helen, Hunter, Chris, Smith, Raffaella, Stephens, Philip, Greenman, Christopher, Bignell, Graham, Teague, Jon, Butler, Adam, Edkins, Sarah, Stevens, Claire, Parker, Adrian, O'Meara, Sarah, Avis, Tim, Barthorpe, Syd, Brackenbury, Lisa, Buck, Gemma, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S ORCID: https://orcid.org/0000-0003-2013-8042, Flanagan, Adrienne M, Green, Anthony, Knowles, Maggie, Leung, Suet Y, Looijenga, Leendert H J, Malkowicz, Bruce, Pierotti, Marco A, Teh, Bin T, Yuen, Siu T, Lakhani, Sunil R, Easton, Douglas F, Weber, Barbara L, Goldstraw, Peter, Nicholson, Andrew G, Wooster, Richard, Stratton, Michael R and Futreal, P Andrew (2005) Somatic mutations of the protein kinase gene family in human lung cancer. Cancer Research, 65 (17). pp. 7591-5. ISSN 0008-5472

Dress, A., Holland, B., Huber, K. T., Koolen, J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Weyer-Menkoff, J. (2005) Delta- additive and Delta-ultra-additive maps, Gromov's trees and the Farris transform. Discrete Applied Mathematics, 146 (1). pp. 51-73. ISSN 0166-218X

Dress, Andreas W. M., Koolen, Jack and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) 4n-10. Annals of Combinatorics, 8 (4). pp. 463-471. ISSN 0218-0006

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Freyhult, E., Gardner, P. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) A comparison of RNA folding measures. BMC Bioinformatics, 6. ISSN 1471-2105

Freyhult, Eva, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Gardner, Paul (2005) Predicting RNA structure using mutual information. Applied Bioinformatics, 4 (1). pp. 53-59. ISSN 1175-5636

Freyhult, Eva, Prusis, Peteris, Lapinsh, Maris, Wikberg, Jarl E. S., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Gustafsson, Mats G. (2005) Unbiased descriptor and parameter selection confirms the potential of proteochemometric modelling. BMC Bioinformatics, 6. ISSN 1471-2105

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Holland, B., Huber, K.T., Penny, D. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The MinMax Squeeze: Guaranteeing a minimal tree for population data. Molecular Biology and Evolution, 22 (2). pp. 235-242. ISSN 0737-4038

Holland, Barbara R., Delsuc, Frédéric and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Visualizing conflicting evolutionary hypotheses in large collections of trees: Using consensus networks to study the origins of placentals and hexapods. Systematic Biology, 54 (1). pp. 66-76. ISSN 1063-5157

Huber, K. T., Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) The tight span of an antipodal metric space: Part 1 - Combinatorial properties. Discrete Mathematics, 303 (1-3). pp. 65-79. ISSN 0012-365X

Huber, K. T. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Phylogenetic networks. In: Mathematics of Evolution and Phylogeny. Oxford University Press, pp. 178-200. ISBN 978-0-19-856610-6

Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435, Semple, C. and Steel, M. (2005) Recovering a phylogenetic tree using pairwise closure operations. Applied Mathematics Letters, 18 (3). pp. 361-366. ISSN 0893-9659

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2005) Four characters suffice to convexly define a phylogenetic tree. SIAM Journal on Discrete Mathematics, 18 (4). pp. 835-843. ISSN 0895-4801

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Kim, J. T. (2005) Effects of Spatial Growth on Gene Expression Dynamics and on Regulatory Network Reconstruction. In: Advances in Artificial Life. Lecture Notes in Computer Science, 3630 . Springer, pp. 825-834. ISBN 978-3-540-28848-0

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Lee, K. K., Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Bevan, M. W. (2005) Sparse Bayesian promoter based gene classification. In: European Symposium on Artificial Neural Networks, 2005-04-27 - 2005-04-29.

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Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Tracking down noncoding RNAs. Proceedings of the National Academy of Sciences of the United States of America (PNAS), 102 (7). pp. 2269-2270. ISSN 1091-6490

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Qi, Guoying, Lee, Richard and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2005) A comprehensive and non-redundant database of protein domain movements. Bioinformatics, 21 (12). pp. 2832-2838. ISSN 1460-2059

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Saadi, K., Lee, Kee-Khoon, Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Bevan, M. W. (2005) Predicting sugar regulation in Arabidopsis thaliana using kernel learning methods. In: 2005 International Joint Conference on Neural Networks, 2005-07-31 - 2005-08-04.

Steil, Jochen J., Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Villmann, Thomas (2005) Trends in Neurocomputing at ESANN 2004. Neurocomputing, 64. pp. 1-4.

Stephens, Philip, Edkins, Sarah, Davies, Helen, Greenman, Christopher, Cox, Charles, Hunter, Chris, Bignell, Graham, Teague, Jon, Smith, Raffaella, Stevens, Claire, O'Meara, Sarah, Parker, Adrian, Tarpey, Patrick, Avis, Tim, Barthorpe, Andy, Brackenbury, Lisa, Buck, Gemma, Butler, Adam, Clements, Jody, Cole, Jennifer, Dicks, Ed, Edwards, Ken, Forbes, Simon, Gorton, Matthew, Gray, Kristian, Halliday, Kelly, Harrison, Rachel, Hills, Katy, Hinton, Jonathon, Jones, David, Kosmidou, Vivienne, Laman, Ross, Lugg, Richard, Menzies, Andrew, Perry, Janet, Petty, Robert, Raine, Keiran, Shepherd, Rebecca, Small, Alexandra, Solomon, Helen, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, Webb, Anthony, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S ORCID: https://orcid.org/0000-0003-2013-8042, Flanagan, Adrienne M, Green, Anthony, Knowles, Maggie, Leung, Suet Y, Looijenga, Leendert H J, Malkowicz, Bruce, Pierotti, Marco A, Teh, Bin, Yuen, Siu T, Nicholson, Andrew G, Lakhani, Sunil, Easton, Douglas F, Weber, Barbara L, Stratton, Michael R, Futreal, P Andrew and Wooster, Richard (2005) A screen of the complete protein kinase gene family identifies diverse patterns of somatic mutations in human breast cancer. Nature Genetics, 37 (6). pp. 590-592. ISSN 1061-4036

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Tucker, Warwick and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Reconstructing metabolic networks using interval analysis. In: Algorithms in Bioinformatics. Lecture Notes in Computer Science, 3692 . Springer Berlin / Heidelberg, pp. 192-203. ISBN 978-3-540-29008-7

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Winkworth, Richard C., Bryant, David, Lockhart, Peter J., Havell, David and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2005) Biogeographic interpretation of split graphs: Least squares optimization of edge lengths. Systematic Biology, 54 (1). pp. 56-65. ISSN 1063-5157