Items where Research Group is "Computational Biology

Article

Bescoby, David J., Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Chroston, P. Neil (2004) Enhanced interpretation of magnetic survey sata using artificial neural networks: A case study from Butrint, Southern Albania. Archaeological Prospection, 11 (4). pp. 189-199. ISSN 1099-0763

Bryant, David and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2004) NeighborNet: An agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution, 21 (2). pp. 255-265. ISSN 0737-4038

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2004) Fast exact leave-one-out cross-validation of sparse least-squares support vector machines. Neural Networks, 17 (10). pp. 1467-1475. ISSN 0893-6080

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Talbot, Nicola L. C., Foxall, Robert J., Dorling, Stephen R. and Mandic, Danilo P. (2004) Heteroscedastic kernel ridge regression. Neurocomputing, 57. pp. 105-124. ISSN 0925-2312

Daidone, Isabella, Roccatano, Danilo and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2004) Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling. Journal of Molecular Biology, 339 (3). pp. 515-525. ISSN 0022-2836

Forslund, Kristoffer, Huson, Daniel H. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2004) VisRD - Visual Recombination Detection. Bioinformatics, 20 (18). pp. 3654-3655. ISSN 1367-4803

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2004) Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements. Journal of Molecular Biology, 339 (4). pp. 1001-1021. ISSN 0022-2836

Holland, Barbara R., Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Lockhart, Peter J. (2004) Using consensus networks to visualize contradictory evidence for species phylogeny. Molecular Biology and Evolution, 21 (7). pp. 1459-1461. ISSN 0737-4038

Huber, K. T. (2004) Recovering trees from well-separated multi-state characters. Discrete Mathematics, 278 (1-3). pp. 151-164. ISSN 0012-365X

Huber, Katharina T., Koolen, Jacobus H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2004) The tight span of an antipodal metric space: Part II - Geometrical properties. Discrete and Computational Geometry, 31 (4). pp. 567-586. ISSN 0179-5376

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2004) Replacing cliques by stars in quasi-median graphs. Discrete Applied Mathematics, 143 (1-3). pp. 194-203. ISSN 0166-218X

Kim, Jan T., Gewehr, Jan E. and Martinetz, Thomas (2004) Binding matrix: A novel approach for binding site recognition. Journal of Bioinformatics and Computational Biology, 2 (2). pp. 289-307. ISSN 0219-7200

Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2004) There are finitely many triangle-free distance-regular graphs with degree 8, 9, or 10. Journal of Algebraic Combinatorics, 19 (2). pp. 205-217. ISSN 0925-9899

Koolen, J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Stevanovic, D. (2004) The structure of spherical graphs. European Journal of Combinatorics, 25 (2). pp. 299-310. ISSN 0195-6698

Magiorkinis, G., Magiorkinis, E., Paraskevis, D., Vandamme, A.-M., Van Ranst, M., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Hatzakiu, A. (2004) Phylogenetic analysis of the full-length SARS-CoV sequences: Evidence for phylogenetic discordance in three genomic regions. Journal of Medical Virology, 74 (3). pp. 369-372. ISSN 0146-6615

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2004) Peeling phylogenetic 'oranges'. Advances in Applied Mathematics, 33 (4). pp. 710-727. ISSN 0196-8858

Nunnari, Giuseppe, Dorling, Stephen, Schlink, Uwe, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095, Foxall, Rob and Chatterton, Tim (2004) Modelling SO2 concentration at a point with statistical approaches. Environmental Modelling & Software, 19 (10). pp. 887-905. ISSN 1873-6726

Stephens, Philip, Hunter, Chris, Bignell, Graham, Edkins, Sarah, Davies, Helen, Teague, Jon, Stevens, Claire, O'meara, Sarah, Smith, Raffaella, Parker, Adrian, Barthorpe, Andy, Blow, Matthew, Brackenbury, Lisa, Butler, Adam, Clarke, Oliver, Cole, Jennifer, Dicks, Ed, Dike, Angus, Drozd, Anja, Edwards, Ken, Forbes, Simon, Foster, Rebecca, Gray, Kristian, Greenman, Christopher, Halliday, Kelly, Hills, Katy, Kosmidou, Vivienne, Lugg, Richard, Menzies, Andy, Perry, Janet, Petty, Robert, Raine, Keiran, Ratford, Lewis, Shepherd, Rebecca, Small, Alexandra, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042, Flanagan, Adrienne M., Knowles, Margaret, Leung, Suet Y., Louis, David N., Looijenga, Leendert H. J., Malkowicz, Bruce, Pierotti, Marco A., Teh, Bin, Chenevix-trench, Georgia, Weber, Barbara L., Yuen, Siu T., Harris, Grace, Goldstraw, Peter, Nicholson, Andrew G., Futreal, P. Andrew, Wooster, Richard and Stratton, Michael R. (2004) Lung cancer:intragenic ERBB2 kinase mutations in tumours. Nature, 431 (7008). pp. 525-526. ISSN 0028-0836

Theobald, B, Bangham, JA, Matthews, I and Cawley, GC ORCID: https://orcid.org/0000-0002-4118-9095 (2004) Near-videorealistic synthetic talking faces: Implementation and evaluation. Speech Communication, 44 (1-4). pp. 127-140. ISSN 0167-6393

Book Section

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Talbot, Nicola L. C., Janacek, Gareth J. and Peck, Mike W. (2004) Bayesian Kernel Learning Methods for Parametric Accelerated Life Survival Analysis. In: Deterministic and Statistical Methods in Machine Learning. Lecture Notes in Computer Science, 3635 . Springer Berlin / Heidelberg, pp. 37-55.

Kim, Jan T., Martinetz, Thomas and Polani, Daniel (2004) On the Evolution of Information in the Constituents of Regulatory Gene Networks. In: Function and Regulation of Cellular Systems: Experiments and Models. Mathematics and Biosciences in Interaction . Birkhäuser Basel, pp. 259-264. ISBN 978-3764369255

Conference or Workshop Item

Ambrose, M. J., Knox, M., Vershinin, A., Flavell, A. J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Ellis, T. H. N. (2004) Exploration of germplasm resources: progress and results from the application of molecular markers to the whole JIC Pisum collection. In: 5th European Conference on Grain Legumes & 2nd International Conference on Legume Genomics and Genetics, 2004-06-07 - 2004-06-11, Palais de Congres.

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, N. L. C. (2004) Efficient model selection for kernel logistic regression. In: 17th International Conference on Pattern Recognition, 2004-08-23 - 2004-08-26.

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, N. L. C. (2004) Sparse Bayesian kernel logistic regression. In: European Symposium on Artificial Neural Networks, 2004-04-28 - 2004-04-30.

Saadi, K., Talbot, N. L. C. and Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 (2004) Optimally regularised kernel Fisher discriminant analysis. In: 17th International Conference on Pattern Recognition, 2004-08-23 - 2004-08-26.

Book

Dress, A, Huber, Katharina, Koolen, J, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, A (2004) Basic Phylogenetic Combinatorics. Cambridge University Press.