Items where Research Group is "Computational Biology

A

Ambrose, M. J., Knox, M., Vershinin, A., Flavell, A. J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Ellis, T. H. N. (2004) Exploration of germplasm resources: progress and results from the application of molecular markers to the whole JIC Pisum collection. In: 5th European Conference on Grain Legumes & 2nd International Conference on Legume Genomics and Genetics, 2004-06-07 - 2004-06-11, Palais de Congres.

B

Bescoby, David J., Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Chroston, P. Neil (2004) Enhanced interpretation of magnetic survey sata using artificial neural networks: A case study from Butrint, Southern Albania. Archaeological Prospection, 11 (4). pp. 189-199. ISSN 1099-0763

Bryant, David and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2004) NeighborNet: An agglomerative method for the construction of phylogenetic networks. Molecular Biology and Evolution, 21 (2). pp. 255-265. ISSN 0737-4038

C

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, N. L. C. (2004) Efficient model selection for kernel logistic regression. In: 17th International Conference on Pattern Recognition, 2004-08-23 - 2004-08-26.

Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, N. L. C. (2004) Sparse Bayesian kernel logistic regression. In: European Symposium on Artificial Neural Networks, 2004-04-28 - 2004-04-30.

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2004) Fast exact leave-one-out cross-validation of sparse least-squares support vector machines. Neural Networks, 17 (10). pp. 1467-1475. ISSN 0893-6080

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Talbot, Nicola L. C., Foxall, Robert J., Dorling, Stephen R. and Mandic, Danilo P. (2004) Heteroscedastic kernel ridge regression. Neurocomputing, 57. pp. 105-124. ISSN 0925-2312

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095, Talbot, Nicola L. C., Janacek, Gareth J. and Peck, Mike W. (2004) Bayesian Kernel Learning Methods for Parametric Accelerated Life Survival Analysis. In: Deterministic and Statistical Methods in Machine Learning. Lecture Notes in Computer Science, 3635 . Springer Berlin / Heidelberg, pp. 37-55.

D

Daidone, Isabella, Roccatano, Danilo and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2004) Investigating the accessibility of the closed domain conformation of citrate synthase using essential dynamics sampling. Journal of Molecular Biology, 339 (3). pp. 515-525. ISSN 0022-2836

Dress, A, Huber, Katharina, Koolen, J, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, A (2004) Basic Phylogenetic Combinatorics. Cambridge University Press.

F

Forslund, Kristoffer, Huson, Daniel H. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2004) VisRD - Visual Recombination Detection. Bioinformatics, 20 (18). pp. 3654-3655. ISSN 1367-4803

H

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2004) Identification of specific interactions that drive ligand-induced closure in five enzymes with classic domain movements. Journal of Molecular Biology, 339 (4). pp. 1001-1021. ISSN 0022-2836

Holland, Barbara R., Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Lockhart, Peter J. (2004) Using consensus networks to visualize contradictory evidence for species phylogeny. Molecular Biology and Evolution, 21 (7). pp. 1459-1461. ISSN 0737-4038

Huber, K. T. (2004) Recovering trees from well-separated multi-state characters. Discrete Mathematics, 278 (1-3). pp. 151-164. ISSN 0012-365X

Huber, Katharina T., Koolen, Jacobus H. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2004) The tight span of an antipodal metric space: Part II - Geometrical properties. Discrete and Computational Geometry, 31 (4). pp. 567-586. ISSN 0179-5376

Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2004) Replacing cliques by stars in quasi-median graphs. Discrete Applied Mathematics, 143 (1-3). pp. 194-203. ISSN 0166-218X

K

Kim, Jan T., Gewehr, Jan E. and Martinetz, Thomas (2004) Binding matrix: A novel approach for binding site recognition. Journal of Bioinformatics and Computational Biology, 2 (2). pp. 289-307. ISSN 0219-7200

Kim, Jan T., Martinetz, Thomas and Polani, Daniel (2004) On the Evolution of Information in the Constituents of Regulatory Gene Networks. In: Function and Regulation of Cellular Systems: Experiments and Models. Mathematics and Biosciences in Interaction . Birkhäuser Basel, pp. 259-264. ISBN 978-3764369255

Koolen, J. and Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 (2004) There are finitely many triangle-free distance-regular graphs with degree 8, 9, or 10. Journal of Algebraic Combinatorics, 19 (2). pp. 205-217. ISSN 0925-9899

Koolen, J., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Stevanovic, D. (2004) The structure of spherical graphs. European Journal of Combinatorics, 25 (2). pp. 299-310. ISSN 0195-6698

M

Magiorkinis, G., Magiorkinis, E., Paraskevis, D., Vandamme, A.-M., Van Ranst, M., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Hatzakiu, A. (2004) Phylogenetic analysis of the full-length SARS-CoV sequences: Evidence for phylogenetic discordance in three genomic regions. Journal of Medical Virology, 74 (3). pp. 369-372. ISSN 0146-6615

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2004) Peeling phylogenetic 'oranges'. Advances in Applied Mathematics, 33 (4). pp. 710-727. ISSN 0196-8858

N

Nunnari, Giuseppe, Dorling, Stephen, Schlink, Uwe, Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095, Foxall, Rob and Chatterton, Tim (2004) Modelling SO2 concentration at a point with statistical approaches. Environmental Modelling & Software, 19 (10). pp. 887-905. ISSN 1873-6726

S

Saadi, K., Talbot, N. L. C. and Cawley, G. C. ORCID: https://orcid.org/0000-0002-4118-9095 (2004) Optimally regularised kernel Fisher discriminant analysis. In: 17th International Conference on Pattern Recognition, 2004-08-23 - 2004-08-26.

Stephens, Philip, Hunter, Chris, Bignell, Graham, Edkins, Sarah, Davies, Helen, Teague, Jon, Stevens, Claire, O'meara, Sarah, Smith, Raffaella, Parker, Adrian, Barthorpe, Andy, Blow, Matthew, Brackenbury, Lisa, Butler, Adam, Clarke, Oliver, Cole, Jennifer, Dicks, Ed, Dike, Angus, Drozd, Anja, Edwards, Ken, Forbes, Simon, Foster, Rebecca, Gray, Kristian, Greenman, Christopher, Halliday, Kelly, Hills, Katy, Kosmidou, Vivienne, Lugg, Richard, Menzies, Andy, Perry, Janet, Petty, Robert, Raine, Keiran, Ratford, Lewis, Shepherd, Rebecca, Small, Alexandra, Stephens, Yvonne, Tofts, Calli, Varian, Jennifer, West, Sofie, Widaa, Sara, Yates, Andrew, Brasseur, Francis, Cooper, Colin S. ORCID: https://orcid.org/0000-0003-2013-8042, Flanagan, Adrienne M., Knowles, Margaret, Leung, Suet Y., Louis, David N., Looijenga, Leendert H. J., Malkowicz, Bruce, Pierotti, Marco A., Teh, Bin, Chenevix-trench, Georgia, Weber, Barbara L., Yuen, Siu T., Harris, Grace, Goldstraw, Peter, Nicholson, Andrew G., Futreal, P. Andrew, Wooster, Richard and Stratton, Michael R. (2004) Lung cancer:intragenic ERBB2 kinase mutations in tumours. Nature, 431 (7008). pp. 525-526. ISSN 0028-0836

T

Theobald, B, Bangham, JA, Matthews, I and Cawley, GC ORCID: https://orcid.org/0000-0002-4118-9095 (2004) Near-videorealistic synthetic talking faces: Implementation and evaluation. Speech Communication, 44 (1-4). pp. 127-140. ISSN 0167-6393