Hurst, Rachel, Brewer, Daniel S., Gihawi, Abraham, Wain, John and Cooper, Colin S. (2024) Cancer invasion and anaerobic bacteria: New insights into mechanisms. Journal of Medical Microbiology, 73 (3). ISSN 0022-2615
Gihawi, Abraham, Ge, Yuchen, Lu, Jennifer, Puiu, Daniela, Xu, Amanda, Cooper, Colin S., Brewer, Daniel S., Pertea, Mihaela and Salzberg, Steven L. (2023) Major data analysis errors invalidate cancer microbiome findings. mBIO, 14 (5). ISSN 2150-7511
Gihawi, Abraham, Cooper, Colin S. and Brewer, Daniel S. (2023) Caution regarding the specificities of pan-cancer microbial structure. Microbial Genomics, 9 (8). ISSN 2057-5858
Gihawi, Abraham, Cardenas, Ryan, Hurst, Rachel and Brewer, Daniel S. (2023) Quality Control in Metagenomics Data. In: Metagenomic Data Analysis. Methods in Molecular Biology . Springer, New York, pp. 21-54. ISBN 978-1-0716-3071-6
Hurst, Rachel, Meader, Emma, Gihawi, Abraham, Rallapalli, Ghanasyam, Clark, Jeremy, Kay, Gemma L., Webb, Martyn, Manley, Kate, Curley, Helen, Walker, Helen, Kumar, Ravi, Schmidt, Katarzyna, Crossman, Lisa, Eeles, Rosalind A., Wedge, David C., Lynch, Andy G., Massie, Charlie E., Yazbek-Hanna, Marcelino, Rochester, Mark, Mills, Robert D., Mithen, Richard F., Traka, Maria H., Ball, Richard Y., O'Grady, Justin, Brewer, Daniel S., Wain, John and Cooper, Colin S. (2022) Microbiomes of urine and the prostate are linked to human prostate cancer risk groups. European Urology Oncology, 5 (4). pp. 412-419. ISSN 2588-9311
Gihawi, Abraham, Rallapalli, Ghanasyam, Hurst, Rachel, Cooper, Colin, Leggett, Richard M. and Brewer, Daniel (2019) SEPATH: Benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines. Genome Biology, 20. ISSN 1474-760X
Magiorkinis, Gkikas, Matthews, Philippa C., Wallace, Susan E., Jeffery, Katie, Dunbar, Kevin, Tedder, Richard, Mbisa, Jean L., Hannigan, Bernadette, Vayena, Effy, Simmonds, Peter, Brewer, Daniel S., Gihawi, Abraham, Rallapalli, Ghanasyam, Lahnstein, Lea, Fowler, Tom, Patch, Christine, Maleady-Crowe, Fiona, Lucassen, Anneke and Cooper, Colin (2019) Potential for diagnosis of infectious disease from the 100,000 Genomes Project Metagenomic Dataset: Recommendations for reporting results. Wellcome Open Research, 4.