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Strimmer, Korbinian, Forslund, Kristoffer, Holland, Barbara and Moulton, Vincent 
ORCID: https://orcid.org/0000-0001-9371-6435
(2003)
A novel exploratory method for visual recombination detection.
Genome Biology, 4.
ISSN 1465-6906
Abstract
A versatile visual approach for detecting recombination and identifying recombination breakpoints within a sequence alignment is presented. The method is based on two novel diagrams - the highway plot and the occupancy plot - that graphically portray phylogenetic inhomogeneity along an alignment, and can be viewed as a synthesis of two widely used but unrelated methods: bootscanning and quartet-mapping. To illustrate the method, simulated data and HIV-1 and influenza A datasets are investigated.
| Item Type: | Article |
|---|---|
| Uncontrolled Keywords: | sdg 3 - good health and well-being ,/dk/atira/pure/sustainabledevelopmentgoals/good_health_and_well_being |
| Faculty \ School: | Faculty of Science > School of Computing Sciences |
| Depositing User: | Vishal Gautam |
| Date Deposited: | 13 Jun 2011 12:38 |
| Last Modified: | 24 Oct 2022 03:04 |
| URI: | https://ueaeprints.uea.ac.uk/id/eprint/21685 |
| DOI: | 10.1186/gb-2003-4-5-r33 |
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