Items where Research Group is "Phylogenetics (former - to 2018)

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Beckers, Matthew, Mohorianu, Irina-Ioana, Stocks, Matthew, Applegate, Christopher, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2017) Comprehensive processing of high-throughput small RNA sequencing data including quality checking, normalization, and differential expression analysis using the UEA sRNA Workbench. RNA, 23 (6). pp. 823-835. ISSN 1355-8382

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Collins, David H., Mohorianu, Irina, Beckers, Matthew, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 and Bourke, Andrew F. G. ORCID: https://orcid.org/0000-0001-5891-8816 (2017) MicroRNAs associated with caste determination and differentiation in a primitively eusocial insect. Scientific Reports, 7. ISSN 2045-2322

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Gambette, Philippe, Huber, K. T. and Kelk, S. (2017) On the challenge of reconstructing level-1 phylogenetic networks from triplets and clusters. Journal of Mathematical Biology, 74 (7). 1729–1751. ISSN 0303-6812

Gambette, Philippe, Huber, Katharina T. and Scholz, Guillaume E. (2017) Uprooted phylogenetic networks. Bulletin of Mathematical Biology, 79 (9). 2022–2048. ISSN 0092-8240

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Huber, Katharina, van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Scornavacca, Celine and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2017) Reconstructing phylogenetic level-1 networks from nondense binet and trinet sets. Algorithmica, 77 (1). pp. 173-200. ISSN 0178-4617

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Mock, Thomas ORCID: https://orcid.org/0000-0001-9604-0362, Otillar, Robert P., Strauss, Jan, McMullan, Mark, Paajanen, Pirita, Schmutz, Jeremy, Salamov, Asaf, Sanges, Remo, Toseland, Andrew, Ward, Ben J., Allen, Andrew E., Dupont, Christopher L., Frickenhaus, Stephan, Maumus, Florian, Veluchamy, Alaguraj, Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001, Barry, Kerrie W., Falciatore, Angela, Ferrante, Maria I., Fortunato, Antonio E., Glöckner, Gernot, Gruber, Ansgar, Hipkin, Rachel, Janech, Michael G., Kroth, Peter G., Leese, Florian, Lindquist, Erika A., Lyon, Barbara R., Martin, Joel, Mayer, Christoph, Parker, Micaela, Quesneville, Hadi, Raymond, James A., Uhlig, Christiane, Valas, Ruben E., Valentin, Klaus U., Worden, Alexandra Z., Armbrust, E. Virginia, Clark, Matthew D., Bowler, Chris, Green, Beverley R., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, van Oosterhout, Cock ORCID: https://orcid.org/0000-0002-5653-738X and Grigoriev, Igor V. (2017) Evolutionary genomics of a cold-adapted diatom: Fragilariopsis cylindrus. Nature, 541. 536–540. ISSN 0028-0836

Mohorianu, Irina, Stocks, Matthew Benedict, Applegate, Christopher Steven, Folkes, Leighton and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2017) The UEA small RNA workbench:A suite of computational tools for small RNA analysis. In: MicroRNA Detection and Target Identification. Methods in Molecular Biology . Springer, pp. 193-224. ISBN 978-1-4939-6864-0

Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, Oldman, James and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2017) A cubic-time algorithm for computing the trinet distance between level-1 networks. Information Processing Letters, 123. 36–41. ISSN 0020-0190

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Van Iersel, Leo, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435, de Swart, Eveline and Wu, Taoyang ORCID: https://orcid.org/0000-0002-2663-2001 (2017) Binets: fundamental building blocks for phylogenetic networks. Bulletin of Mathematical Biology, 79 (5). 1135–1154. ISSN 0092-8240