Items where Research Group is "Computational Biology

Article

Cawley, Gavin C. ORCID: https://orcid.org/0000-0002-4118-9095 and Talbot, Nicola L. C. (2008) Efficient approximate leave-one-out cross-validation for kernel logistic regression. Machine Learning, 71 (2-3). pp. 243-264.

Choe, Y., Koolen, J., Huber, K. T., Moulton, V. ORCID: https://orcid.org/0000-0001-9371-6435 and Won, Y. (2008) Counting vertices and cubes in median graphs associated to circular split systems. European Journal of Combinatorics, 29 (2). pp. 443-456.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Block realizations of finite metrics and the tight-span construction I: The embedding theorem. Applied Mathematics Letters (2). pp. 1306-1309.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Compatible decompositions and block realizations of finite metrics. European Journal of Combinatorics, 29 (7). pp. 1617-1633.

Dress, Andreas W. M., Huber, Katharina T., Koolen, Jacobus and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Cut points in metric spaces. Applied Mathematics Letters, 21 (6). pp. 545-548.

Gill, Jonna, Linusson, Svante, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Steel, Mike (2008) A regular decomposition of the edge-product space of phylogenetic trees. Advances in Applied Mathematics, 41 (2). pp. 158-176. ISSN 0196-8858

Grünewald, Stefan, Huber, Katharina T., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Semple, Charles (2008) Encoding phylogenetic trees in terms of weighted quartets. Journal of Mathematical Biology, 56 (4). pp. 465-477. ISSN 0303-6812

Grünewald, Stefan, Huber, Katharina T. and Wu, Qiong (2008) Two novel closure rules for constructing phylogenetic super-networks. Bulletin of Mathematical Biology, 70 (7). pp. 1906-1924. ISSN 0092-8240

Guyon, Isabelle, Saffari, Amir, Dror, Gideon and Cawley, Gavin ORCID: https://orcid.org/0000-0002-4118-9095 (2008) Analysis of the IJCNN 2007 agnostic learning versus prior knowledge challenge. Neural Networks, 21 (2-3). pp. 544-550.

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and Milner-White, E. James (2008) The geometry of alpha-sheet: Implications for its possible function as amyloid precursor in proteins. Proteins: Structure, Function, and Bioinformatics, 71 (1). 415 - 425. ISSN 0887-3585

Holland, Barbara R., Benthin, Steffi, Lockhart, Peter J., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T. (2008) Using supernetworks to distinguish hybridization from lineage-sorting. BMC Evolutionary Biology, 8. ISSN 1471-2148

Huber, Katharina T., Koolen, Jacobus, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2008) Characterizing cell-decomposable metrics. Electronic Journal of Combinatorics, 15 (1). ISSN 1077-8926

Huber, Katharina T., Lott, Martin, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Spillner, Andreas (2008) The complexity of deriving multi-labeled trees from bipartitions. Journal of Computational Biology, 15 (6). pp. 639-651. ISSN 1557-8666

Ishida, Hisashi and Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 (2008) Path of nascent polypeptide in exit tunnel revealed by molecular dynamics simulation of ribosome. Biophysical Journal, 95 (12). pp. 5962-5973.

Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Jing, Runchan, Szittya, Gyorgy, Schwach, Frank, Rusholme Pilcher, Rachel L., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) Deep sequencing of tomato short RNAs identifies microRNAs targeting genes involved in fruit ripening. Genome Research, 18 (10). pp. 1602-1609. ISSN 1088-9051

Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Kim, Jan T. (2008) A scoring matrix approach to detecting miRNA target sites. Algorithms for Molecular Biology, 3 (3). ISSN 1748-7188

Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Schwach, Frank, Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429, MacLean, Dan, Studholme, David J. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) A toolkit for analysing large-scale plant small RNA datasets. Bioinformatics, 24 (19). pp. 2252-2253. ISSN 1367-4803

Nicolas Molina, Francisco Esteban, Pais, Helio, Schwach, Frank, Lindow, Morten, Kauppinen, Sakari, Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) Experimental identification of microRNA-140 targets by silencing and over-expressing miR-140. RNA, 14. pp. 2513-2520. ISSN 1469-9001

Spillner, Andreas, Nguyen, Binh T. and Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 (2008) Computing phylogenetic diversity for split systems. IEEE/ACM Transactions on Computational Biology and Bioinformatics, 5 (2). pp. 235-244. ISSN 1545-5963

Szittya, György, Moxon, Simon ORCID: https://orcid.org/0000-0003-4644-1816, Santos, Dulce M., Jing, Runchan, Fevereiro, Manuel P. S., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Dalmay, Tamas ORCID: https://orcid.org/0000-0003-1492-5429 (2008) High-throughput sequencing of Medicago truncatula short RNAs identifies eight new miRNA families. BMC Genomics, 9. ISSN 1471-2164

Wu, Qiong, James, Steve A., Roberts, Ian N., Moulton, Vincent ORCID: https://orcid.org/0000-0001-9371-6435 and Huber, Katharina T (2008) Exploring contradictory phylogenetic relationships in yeasts. FEMS Yeast Research, 8 (4). pp. 641-650. ISSN 1567-1364

Book Section

Bagnall, A, Cawley, G ORCID: https://orcid.org/0000-0002-4118-9095, Whittley, I, Bull, L, Studley, M, Pettipher, M and Tekiner, F (2008) Super Computer Heterogeneous Classifier Meta-Ensembles. In: Data Warehousing and Mining: Concepts, Methodologies, Tools and Applications. IGI Global, pp. 1320-1333. ISBN 978-1599049519

Hayward, Steven ORCID: https://orcid.org/0000-0001-6959-2604 and de Groot, Bert L. (2008) Normal Modes and Essential Dynamics. In: Molecular Modeling of Proteins. Methods in Molecular Biology, 443 . The Humana Press Inc, USA, pp. 89-106. ISBN 978-1-59745-177-2

Polani, Daniel, Martinetz, Thomas and Kim, Jan (2008) An Information-Theoretic Approach for the Quantification of Relevance. In: Advances in Artificial Life. Lecture Notes in Computer Science, 2159 . Springer Berlin / Heidelberg, pp. 704-713.

Conference or Workshop Item

Theobald, B, Cawley, G ORCID: https://orcid.org/0000-0002-4118-9095, Bangham, A and Matthews, I (2008) Comparing text-driven and speech-driven visual speech synthesisers. In: 12th Annual Conference of the International Speech Communication Association, 2011-08-27 - 2011-08-31.